TCONS_00003108 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003108
Unique Name	TCONS_00003108
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	650

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000025:637254..641740+
coding sequence from alignment at sc0000025:637254..641740+

transcript sequence

>TCONS_00003108 ID=TCONS_00003108|Name=TCONS_00003108|organism=Clytia hemisphaerica|type=transcript|length=650bp
GTCATTATTTAGATGATTACCATTGGATGAGTGCCAACTTAAAAGAGAAA
TAGTCCTTTTAAAGACGTTGTGACCACTATATTGAAATTGACCAACCCAT
CGGATGAACTAGTGTGTTTCAAGGTCAAAACAACAGCACCCAAGCGATAT
TGTGTTCGACCTAATTGTGGGCTTATCAAACCAGATGGAGGAGCTGTAAA
TGTAGCAGtGATGCTACAGCCCTTCGACTATAAAGATTCAGCAGAAAACA
AACGACACAAATTTCTTGTACAGTCAGTTATACTCAAAGACCCAATAGCT
GAAGAAGAAGTTGAGGGATTTtggaaaaacctTGGAGATGGAACACCCGT
AATGGATTCCAAATTGAAATGCGTTTTCGAGTTACCATCTGGCGAAAGTT
CTTCAGAAAAGATACCATCTGATTCGGCTAGCAGTAGCTCACCACCTAAA
GAGAAGAACACATCTTCTACAACGAAGGAGAGTGCAACAGAAAATATGCA
GACAGCCAAAACAGCCATCGAAAATTCAGAAGTTCGCACACCCTCGTCAT
CCACTACTCATGTATCATCACCTGAAACTAGAGATAGTCCGCGACAGACG
TCCGCTAAACAGCGCTCGCCTCAACAAAAACAGGTGAGTGAGCTTGGAGC

Run BLAST on NCBI

protein sequence of TCONS_00003108-protein

>TCONS_00003108-protein ID=TCONS_00003108-protein|Name=TCONS_00003108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MLQPFDYKDSAENKRHKFLVQSVILKDPIAEEEVEGFWKNLGDGTPVMDS
KLKCVFELPSGESSSEKIPSDSASSSSPPKEKNTSSTTKESATENMQTAK
TAIENSEVRTPSSSTTHVSSPETRDSPRQTSAKQRSPQQKQVSELG

Run BLAST on NCBI

transcript from alignment at sc0000025:637254..641740+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003108 ID=TCONS_00003108|Name=TCONS_00003108|organism=Clytia hemisphaerica|type=transcript|length=4487bp|location=Sequence derived from alignment at sc0000025:637254..641740+ (Clytia hemisphaerica)
GTCATTATTTAGATGATTACCATTGGATGAGTGCCAACTTAAAAGAGAAA
TAGTTAAGTCTGTAAAGTGTAGAAGAGGCCTTATTCTATTTCTTTGAGTG
TAGAAAGGTCCTTGAACAATTTTTAATGTAGCACATTATAATGTGCAGCA
TCATTTATAATGTAGGACattataattattaaaaaccTACATATAATGGA
CAACATTATTTTCCGTGGTGAAATATGGCTGAATCAATAAGAAGTGGTCA
TTCGATTACTTCAATTATTATCAATTATTTCAATAATCGAATTTATtgat
taaagtctgtctcaaaataatttatcaaacaaaaaaaattgatttttcat
tttcatttttctttatttttcaatttttcaatttttcaacaagcacaaaa
tcgcaacttcattcaaattctatcaaaagttacagccatttttgtctcag
ctgcaaattattttgagatataCTTTAGTACCGTCTCGGAAAAGGTCCTA
ACCTTGAAATAAATTATAATGtgtagctgaaatttggcacagaggCTCCT
TTTGAGTCCAAGAACcacacaaaaaaattgacaatggaTTCCTAAAGTTT
TAGACTGTTTTCAGGGCATCTTATGATGAtgtcaattttcaatataatct
tccTTTTGTATAAAATTCCTATAATttcgcactaagattcttgtcacttt
ccatgaatctttccgctattttcCCAGGATAACtggcatgagattggaaa
gggtttgtttctaaaggcatggaaaaacttatttttcaactaccctAAGT
CCTGGCTTTTTTCTGCCAGAAAATTGGCAAAGGAAtgttagtgcggaaat
gggaatctgaTACAAACCGACCTTAATTTGCAAACCCCTTGCAAACTTTA
AAACAAGGATGAAAAAACgatttagattttcttttttctatttctgtAAA
TTTTGGACCCTTTCAGTGGGTGTAGAATTCgctttttgtaacccttagag
agactttccAGGGTGTAAAAATAGGACCCATATGGCAGGCTGGCTCTAGG
CTTTAAAAGAGCATCTAGTAACATAAAAACCAGAAAATGACTCTTCGATG
TGAATCAAATATAGTGTactcacaaacatcaatttgagAGATCTAGCAAA
ATTGATGACACTGTTGtcatttcagccaaatttcagctAGTCCTACACAc
ctcaacttttgaaaaccagTTTCATCACACCCATCTTTAAAAAGGCAACC
AAGGCTTACGACCGAAATTCGGACAAACCTCTGGAGTGATTTTTACGTTC
CCTATAAattaaaagtaaatatttttgtaaaaattatgtGGGTGAAGCGA
GCACGAAAATTTTTGGTGAAAAAGTGGAATAGggtgtttttagaaaaaat
ttggatcaatttgaaaaagaaaagcgcaccgcgctgaatctaaaaataga
ttttatttttgacataatcattactctcatTGTGTTTGTAcaagttccaa
tcccatcaacctttgcgttaatctcttttgcatcatttgacaaaagatat
ataacaacttgcacgtatctttaattgagctgcattgaattgtgggattg
caacttgTACAAATGTGAAttaagtaataattatgacgtaagAGTTGCGG
AACGCTATTAAACTTATggtaaaattaattttggcaaattaaCAGATAGT
TTAAATTTGACGAGAATATAACTTAGATGATTTTGGTAATTTCTTCTTGC
AAAGATTTCTTCCTATAATGTAATTTAAAGAATATATAGGGGATTAATAT
TGAtaaattttggtatttgaatattttctgtTCTTTTTTAACAGGTCCTT
TTAAAGACGTTGTGACCACTATATTGAAATTGACCAACCCATCGGATGAA
CTAGTGTGTTTCAAGGTCAAAACAACAGCACCCAAGCGATATTGTGTTCG
ACCTAATTGTGGGCTTATCAAACCAGATGGAGGAGCTGTAAATGTAGCAG
GTATGATGAATTCATTGTTTATCATAGTATGTGAAAAAAACTTGGTTGGC
TTAACTTCAGGATCTTGGAATTTGAAGTTTTATTTGCTTGATAAAGAGCC
AATACAAGCTCCGAATTATGTCTCAGAATAATTATGTTGtgaaattattt
aatttttgattccACGGCACATTTTATATTTctccttttttccttttcag
tGATGCTACAGCCCTTCGACTATAAAGATTCAGCAGAAAACAAACGACAC
AAATTTCTTGTACAGTCAGTTATACTCAAAGACCCAATAGCTGAAGAAGA
AGTTGAGGGATTTGTAAGTTGCTTGCACTGATATCTAGCTACTTGACTCG
ACCAGGATTCCCTTATAAAGGAAGCATGTGCAGTTTTAGAGCTGACTAGT
TGTTTTTAATTCTAGTCGTCAACAGcgcaattcgaatgttttgaaagtcG
AACGTTTGAAAATCTAGGTAAATTAAATAGCAACCTGAAGAAAAACTAGA
CACACTTCCACAGTAAATCTGTAATGTAAGCCTACTAATCTACTGTGTAG
AGGAATATGATATCTTTAGTTGCAGGTCatcatgaaaaaaaatgcagttg
tattgaagtttttacaagatgctcacataattggCTATCCAAAACAATAG
Agttgacgcgttctttagaaaaatataatataagtttttgtttgaatagt
taacgaccaatcccatgacaaaaattcttgtaaatgttcaacttgaccca
aaaaatgtgtttttttgtaCTATTAGTTTCTATTGAGCACCAGTGCATAC
CTACCACCATTCATTATAAACTTCTTACTGATCTCCGAATTGGAACTAAT
ATTAAATCAAGTCCGTTTcttttttagtggaaaaacctTGGAGATGGAAC
ACCCGTAATGGATTCCAAATTGAAATGCGTTTTCGAGTTACCATCTGGCG
AAAGTTCTTCAGAAAAGGTGCGATTCATCATTTCCCTCTGATTGACTTTA
ATAAAGGCcgaggtaaacgattccaacattccaTCTAACATGCCATTTTC
TCTCTGTTGGACagaatgttggaatcgtttactcGAATGCAAAATcggaa
aggaagaaaaaattatgttggaAGAAGGAAAAAAGTGTTGGATGAgagtt
tgatcgccatcaaacattttgtCCAACATTTACTTCTTCTTTTCGTGTTG
GATCATGTTGGATTCGTTTACTCAGCTCACATCCACCATTTGAAAGGGAA
TGACGTCATTAGAAATAGAATCGaatcttttttttgtaaaaattcgaaaa
atctcGTAACANGTCATTAGAAAtagaatcgaatgttttttttgtcaaaa
attcgaaaaatctcgtaacaaatttaaaaagatgGTAGAGAAGCTACTAg
ctcgaatgtttttgtttttttcggaaaataaaCCAAGGGGGAGGGCTGAA
ATTAAGCGATCGTAGAGGGTGTGACCCTTTAAAGGTACGTTTTTCAGgct
tcccaaaatgcactgtgaaattttagaaaatttgaccattttttgccttg
aaatagataaataaatttCAGGAAATTGCACCATAAGAGTCGATATTTCG
CCAGAATTTTCTCTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAAGGAGATCC
AACACCTTTCCAAAATTCATCCAACATTCGTCCAACATTTCAATTtctat
gttggatgaaatgttggaatcgtttacctcgGCCTTAAAGTTCAATGGCA
AATCATATTAGCACAAACTAAGCATAATTGCACTGAGATTGGGTTTCTTG
CATTACAAAGAAagccaaataattttttacattACTCATGTTTAACTTGA
TCATCGCAAACAAATGAATGTCTCTTCCCCATCTATCACTGATGTTTCCA
CGATTAAATATCGATACTCTATTGAAAACACTCTCCCCTCATTTTTAGAT
ACCATCTGATTCGGCTAGCAGTAGCTCACCACCTAAAGAGAAGAACACAT
CTTCTACAACGAAGGAGAGTGCAACAGAAAATATGCAGACAGCCAAAACA
GCCATCGAAAATTCAGAAGTTCGCACACCCTCGTCATCCACTACTCATGT
ATCATCACCTGAAACTAGAGATAGTCCGCGACAGACGTCCGCTAAACAGC
GCTCGCCTCAACAAAAACAGGTGAGTGAGCTTGGAGC

Coding sequence (CDS) from alignment at sc0000025:637254..641740+

>TCONS_00003108 ID=TCONS_00003108|Name=TCONS_00003108|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at sc0000025:637254..641740+ (Clytia hemisphaerica)
ATGCTACAGCCCTTCGACTATAAAGATTCAGCAGAAAACAAACGACACAA
ATTTCTTGTACAGTCAGTTATACTCAAAGACCCAATAGCTGAAGAAGAAG
TTGAGGGATTTtggaaaaacctTGGAGATGGAACACCCGTAATGGATTCC
AAATTGAAATGCGTTTTCGAGTTACCATCTGGCGAAAGTTCTTCAGAAAA
GATACCATCTGATTCGGCTAGCAGTAGCTCACCACCTAAAGAGAAGAACA
CATCTTCTACAACGAAGGAGAGTGCAACAGAAAATATGCAGACAGCCAAA
ACAGCCATCGAAAATTCAGAAGTTCGCACACCCTCGTCATCCACTACTCA
TGTATCATCACCTGAAACTAGAGATAGTCCGCGACAGACGTCCGCTAAAC
AGCGCTCGCCTCAACAAAAACAGGTGAGTGAGCTTGGAATGCTACAGCCC
TTCGACTATAAAGATTCAGCAGAAAACAAACGACACAAATTTCTTGTACA
GTCAGTTATACTCAAAGACCCAATAGCTGAAGAAGAAGTTGAGGGATTTt
ggaaaaacctTGGAGATGGAACACCCGTAATGGATTCCAAATTGAAATGC
GTTTTCGAGTTACCATCTGGCGAAAGTTCTTCAGAAAAGATACCATCTGA
TTCGGCTAGCAGTAGCTCACCACCTAAAGAGAAGAACACATCTTCTACAA
CGAAGGAGAGTGCAACAGAAAATATGCAGACAGCCAAAACAGCCATCGAA
AATTCAGAAGTTCGCACACCCTCGTCATCCACTACTCATGTATCATCACC
TGAAACTAGAGATAGTCCGCGACAGACGTCCGCTAAACAGCGCTCGCCTC
AACAAAAACAGGTGAGTGAGCTTGGAATGCTACAGCCCTTCGACTATAAA
GATTCAGCAGAAAACAAACGACACAAATTTCTTGTACAGTCAGTTATACT
CAAAGACCCAATAGCTGAAGAAGAAGTTGAGGGATTTtggaaaaacctTG
GAGATGGAACACCCGTAATGGATTCCAAATTGAAATGCGTTTTCGAGTTA
CCATCTGGCGAAAGTTCTTCAGAAAAGATACCATCTGATTCGGCTAGCAG
TAGCTCACCACCTAAAGAGAAGAACACATCTTCTACAACGAAGGAGAGTG
CAACAGAAAATATGCAGACAGCCAAAACAGCCATCGAAAATTCAGAAGTT
CGCACACCCTCGTCATCCACTACTCATGTATCATCACCTGAAACTAGAGA
TAGTCCGCGACAGACGTCCGCTAAACAGCGCTCGCCTCAACAAAAACAGG
TGAGTGAGCTTGGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001728	XLOC_001728	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003108-protein	TCONS_00003108-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000025	supercontig	sc0000025:637254..641740 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
163.391	163.646	243.113	244.265	179.984	139.053	266.537	274.123	179.921	207.662	199.443	150.555	171.693	177.083	144.718	161.825	192.772	189.538	98.2607	120.542	124.996	125.2	121.85	127.551	215.503	208.519	114.282	96.3003	147.867	117.72

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013783	Ig-like_fold
IPR008962	PapD-like

Blast

[Close]

BLAST of TCONS_00003108 vs. Swiss-Prot (Human)
Match: VAPB (Vesicle-associated membrane protein-associated protein B/C OS=Homo sapiens GN=VAPB PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 3.914e-35
Identity = 66/114 (57.89%), Postives = 79/114 (69.30%), Query Frame = 1

Query:   43 KRNSPFKDVVTTILKLTNPSDELVCFKVKTTAPKRYCVRPNCGLIKPDGGAVNVAVMLQPFDYKDSAENKRHKFLVQSVILKDPIAEEEVEGFWKNLGDGTPVMDSKLKCVFEL 384
            K   PF DVVTT LKL NP+D  VCFKVKTTAP+RYCVRPN G+I   G ++NV+VMLQPFDY D  E  +HKF+VQS+    P    ++E  WK       +MDSKL+CVFEL
Sbjct:   17 KFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDA-GASINVSVMLQPFDY-DPNEKSKHKFMVQSMFA--PTDTSDMEAVWKE-AKPEDLMDSKLRCVFEL 125

The following BLAST results are available for this feature:

BLAST of TCONS_00003108 vs. Swiss-Prot (Human)

BLAST of TCONS_00003108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VAPB	3.914e-35	57.89	Vesicle-associated membrane protein-associated pro...	[more]

You are here

TCONS_00003108 (transcript) - C. hemisphaerica