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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003111 ID=TCONS_00003111|Name=TCONS_00003111|organism=Clytia hemisphaerica|type=transcript|length=1240bp
TCAACTTCCAACACGACGACGTCAACTGTATCTTCAATTATCAATTCTGC
GTTTCTCCTATCGAACCCCACACACCAACACTCAAAAGTATGTCTCCACC
ACCGTGTCCCACACCACCGTTGTTCCAGTTACGACCTTATTCGACAGCCT
GTTGAGTCAGCATTATTACGATCCAAAATGGTATCTCTAACTGTGGTATT
CCTTTTCATCATAACGTCTGGACCTGAACGACTGCAAAAGTTATATCTAA
CTCCACCCAAGATTATCCAGCAAATCCGCCTGGATCAACCATCACCGACG
ACGGGAAGAGGACGCGCGCGCCAGTCATTTCGATCAATCCTAGTCCCAGC
GGTTTTACCTGGTTTTTCCACGCTACAGGTTTTTTAGTCCAGGGACTAGG
TCGTTTGGGATNCGGTTTTACCTGGTTTTTCCACGCTACAGGTTTTTTAG
TCCAGGGATTAGGTCGTTTGGGATGCATCTTGAGTTCGATCAATAGGTGT
TTGTTAGGTTGCtcgttttgtttttcttttattgtttttcttttttgggt
cgttttctttttttttccttcctttttttttattgtttgtacCTCGTTTC
TCATCGCTCTGCTCTCGTTATAAGCTAAGGTTTCTATTTTCAACAACGTC
ACACGGGAGGCTCCGGCTCTCCACATAGGCTaaggtttcttttttttaac
aaCGTCACACTGGAGGCTCAGGCTCTCGTTATAGGCtaggtttctttttt
tttatcttttttctttgtttactcCTCTTAGAACAGCGTCACGGCTTCCG
GCTCTCGTTGCACTCTTTGGGGTTAAACAACATATCACAGCTCCGGCTCT
TGTTGTAggcttttgttcttttttcctTTACTCCTTTCAGCAACGTCACA
CAGGAAGCTCCGGCTCTCCTTAGTAGGCtaaggtttctttttttttatct
tttttctttgtttactcCTCTTAGAACAGCGTCACGGCTTCCGGCTCTCG
TTGCACTCTTTGGGGTTAAACAACATATCACAGCTCCGGCTCTTGTTGTA
ggcttttgttcttttttcttttactcctTTCAGCAACGTCACACAGGAAG
CTCCGGCTCTCCTTAGTAGGCTaaggtttctatttttttttatctttttt
ctttgattactCCTCTTAGAACAGCGTCACGGCTTCCGGCTCTCGTTGCA
CTCTTTGGGGTTAAACAACATATCACAGCTCCGGCTCTTG Run BLAST on NCBI transcript from alignment at sc0000025:683108..687598+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003111 ID=TCONS_00003111|Name=TCONS_00003111|organism=Clytia hemisphaerica|type=transcript|length=4491bp|location=Sequence derived from alignment at sc0000025:683108..687598+ (Clytia hemisphaerica)
TCAACTTCCAACACGACGACGTCAACTGTATCTTCAATTATCAATTCTGC
GTTTCTCCTATCGAACCCCACACACCAACACTCAAAAGTATGTCTCCACC
ACCGTGTCCCACACCACCGTTGTTCCAGTTACGACCTTATTCGACAGCCT
GTTGAGTCAGCATTATTACGATCCAAAATGGTATCTCTAACTGTGGTATT
CCTTTTCATCATAACGTCTGGACCTGAACGACTGCAAAAGTTATATCTAA
CTCCACCCAAGATTATCCAGCAAATCCGCCTGGGTGAGcctgttgttttt
tattattttactgCCTGCACACTTGGAGAAGGCCCATTCGTCGCCAGATT
CGTAATTTTCGATGAGGACATCAACTAATTGCCATAAAGACACTGATTCC
AGCATTCTCTCCCCAATTTCAACTTGGCCTTGAGAATTACATGTCCCTCC
CCTCCTTTCTTCTGAACCTCTATTAGGTCTCCGCCACACTTAGCCAACAA
AATGTCTGATTATTACCAGatagttttgattttctcatttGTATACTTAG
CACGGTATAAGACAAGGCATGTCATTTAGGAGAACGTACATTTGGACTGG
TTTTAGTTAAAGTATCCCTCTTGTAAGTTGGTCCCCGAATCCTCCCCTCT
CTGACAGTGGTGTGTTGTGTCATACATCTCTTTAATAAATCCAATCAAGT
CTCCCCCATCATATTGAGAAAACGAAATGCCTGATTATTTTTAGATTATT
TGTCCTTTCTCCTTCTTTTACACGTCGCAAAGCACAGTATAACACTAGGC
ATGTCATTCTAAGAGGGCGTACATCGGGCTGGTTTTATTTAACATTCGTC
CTTGTAATATGGTCCTCAAATATCAACCCACTTAGCTGTATCTCCATTCA
GCGGTTTTTGTTTATCTTCCTGCCTTTGTCAACCTGCTTGGTTCCACGGC
CGAAGGTTACTTAGAACTATTATAAATCTCTCCGCTGACACTGTCAGTGT
TTTTCATACTTTTGGGGGGTTATCTCACGTGTTATTTTAATTTTATGTTC
CAACCTCATCTGATTGGCGTCTAACCTAATGATAGGTCCTTATTTTGGTA
TTCCCGACAGCATTCGCAAGTTGGGAATCAGTGTCTTTTGTTCTGCACGT
TTAATAGGTTCCTCATTGTGCCTTCAAATCTTATTTCTGGCTATTCTTAT
ATTGAGTTGATTTGCTCCTGTGCTGCCCTTTCTTTAACCAGACAAAATTT
CCAAAGCCTATTTACTTTCCGCGATAGCTCTTCAAACCCAATCACCATGT
CTATCATTCCATCTTACAGTGGCTTAGACCTTACTTAGCGTGTTTGGATT
TCTTGCTTCTTAGAGCAATGACCCATTTCTTTCAGATCTCTCAGTGCCTA
ATGACTTAATTTCTCTTTCCTTTGATGCTCTCGAGGTTTAGGTGTCTTGC
AAAAGGTCAATTGGCCCATCTCCGGTAGGTCCTTTGACTAAGCTGATCTT
ACTCACAATCCAGTATTCAAAGCTTTTGCTGTTCACGCTGCTCTTAAAGC
TTCCTCGAGTCAACGTTCACAGATAATCCACTACAAAACAGTTTTGTGTC
AATTTTCCTAAGGCTCTCATTTGGCTACTCTTCTTCCCCTCTTAACTTTT
GTTCTTACCTTTCCTTTGCTTGCTACACGTTCTCGGCTCTGGTGACGTGT
TTACTAGACCTTCTCTTGTTTTTAGTCTCAGCTTCAGCTACCTTATTCTA
TTTGACTCTCCCAAGTTGAATCATCATGCTGCCCCAATCAAGGGTTCCTC
TGTAGTTGATCTTATGTCTTCTTCTTTTAGATTTACCTCTAATTCCACCT
TTCTGAACTTCCTCTTTACTCTCTGTCCAAATAAATACGTACATTCCTTT
CTTCCTGGTCTGTCACTCTCGTCAGGTCTTTGATGGTGTTCCACTGCATT
TTGCcaattatacaacttttgttgAATTGCCGCATACTTGTTTATACTGa
caatattcaatttcaatcatCAGTGCTGCGGGTAGCAGCTGGTCGCAGAC
AACTACTGGTCATTCTGTAACAATTAGTTTTCCGCCTGTTAGGCTAAAAT
TTGAGGGTTTTAGTCGTGTTGCTTTCTCCCCAAACttctttaatgttttt
aattcattttgCTCGTTCCTtctattttgtcttatttattcTGTTACtta
tagtaattttttttttttctttcaaaatacgCGTTTAATCTAATCATTTC
AGATTTGAACAAATTCTCCTCTCCAATAATTCTCCTACCAGCTAACAGAA
ATTTCCCTATTTGAGGCAATGGTCATGGTCTGCATGATTAATCTTTGCAA
ACTGTCCCTCCTGCAAGCGAACCCCCATTCGACTACCCGGCAACCTGTGC
TTAATGCAAGTTATCTGCATCTCACCCCTTGTTACAATCACCCCCTTTTT
TTTTCAGTGCCCGAGGGAAGATTCTCATTTCCAGCTTTATCGGCAGCATT
ACAAGGGCCCAGAGCTTCTATAGGTGCAGGCACCACCTTCTTAGCAACTT
TGGTATTACCCCTGAGTCCATTTAAAACCCCTTTAACAGACGGGACGGCA
TGGATTAAGTGGCCAAGTGGTTCTTGGGTAGTCCTCTTGTTAACCTCTTG
ATTTTAACCAGACTTCGTTGTTTTTGCAATGTAACTAATAGGATGAAGCA
TTTTTACCCAAAATAAGGAACTACTAACTTGTTGTTCGGTCTCCCCTCTT
ATTAATATTTCAGTGAGTCTTTtccttccttttctttttttcggcCTTTG
CACCTTCAACCTAAATAATAGATTTAGAAGATAGTTACTTCTGTTAGCTT
GCGCTTAGGGTTTGGCGGTGGACTTGGGGGTGCGGGTTACTACGTAAACC
CATCTAGCTCTATTACATCAGATCAGATCAGGCTCAGACCCACGTCACGC
CTCCGGCTCTCGTTGCGGTCTTCACAACCGTCCGCGGTTATAGGCTTTAA
GAAAATCCATCTCTCGATGCATCCCCAAATGTCACGCCAAAACCAACACT
TTCTTACGTTTCATTTTATAGTCAAGATATCTCATTTCACAATTATACAT
TTGTTTCCTTTTCATTGTTTCCCCTTGTTTATGTTTAGGGTATCTTATCA
CTATTTTCGGGTATTTCGACTATCATCAAAACGCATTTTTGGATTCTCCA
CTAGGCTAGGTTTAAGCTACTCATCACTCAACAGTCACACTGATAAGGAA
TTAATTAGAGCTAAACTTTAGCTCATGTTAATTCCGCAATCAGCAAGTCT
AACGCCCGGCATCATATGGCGGGCTTAAACTGCACGCCCACTCCTTCTCG
TCCCAGTCCCACGGACTCCGACTTGTAGCGTTTGAGTTCAGTCATTCAGT
TCACCTCATCCTCTCATGCATTCAAACACAAATACTTTTGCTTCCCACCC
TACCTGACACCCTTATTTATCCCTATGTGCCTTTAACTTGTACTTATTTC
CtttcgctgttttttttttctcttctattTTCAGATCAACCATCACCGAC
GACGGGAAGAGGACGCGCGCGCCAGTCATTTCGATCAATCCTAGTCCCAG
CGGTTTTACCTGGTTTTTCCACGCTACAGGTTTTTTAGTCCAGGGACTAG
GTCGTTTGGGATNCGGTTTTACCTGGTTTTTCCACGCTACAGGTTTTTTA
GTCCAGGGATTAGGTCGTTTGGGATGCATCTTGAGTTCGATCAATAGGTG
TTTGTTAGGTTGCtcgttttgtttttcttttattgtttttcttttttggg
tcgttttctttttttttccttcctttttttttattgtttgtacCTCGTTT
CTCATCGCTCTGCTCTCGTTATAAGCTAAGGTTTCTATTTTCAACAACGT
CACACGGGAGGCTCCGGCTCTCCACATAGGCTaaggtttcttttttttaa
caaCGTCACACTGGAGGCTCAGGCTCTCGTTATAGGCtaggtttcttttt
ttttatcttttttctttgtttactcCTCTTAGAACAGCGTCACGGCTTCC
GGCTCTCGTTGCACTCTTTGGGGTTAAACAACATATCACAGCTCCGGCTC
TTGTTGTAggcttttgttcttttttcctTTACTCCTTTCAGCAACGTCAC
ACAGGAAGCTCCGGCTCTCCTTAGTAGGCtaaggtttctttttttttatc
ttttttctttgtttactcCTCTTAGAACAGCGTCACGGCTTCCGGCTCTC
GTTGCACTCTTTGGGGTTAAACAACATATCACAGCTCCGGCTCTTGTTGT
AggcttttgttcttttttcttttactcctTTCAGCAACGTCACACAGGAA
GCTCCGGCTCTCCTTAGTAGGCTaaggtttctatttttttttatcttttt
tctttgattactCCTCTTAGAACAGCGTCACGGCTTCCGGCTCTCGTTGC
ACTCTTTGGGGTTAAACAACATATCACAGCTCCGGCTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003111-exon-sc0000025-1491911889:683108..683390 | TCONS_00003111-exon-sc0000025-1491911889:683108..683390 | Clytia hemisphaerica | exon |
| TCONS_00003111-exon-sc0000025-1510915933:683108..683390 | TCONS_00003111-exon-sc0000025-1510915933:683108..683390 | Clytia hemisphaerica | exon |
| TCONS_00003111-exon-sc0000025-1575043694:683108..683390 | TCONS_00003111-exon-sc0000025-1575043694:683108..683390 | Clytia hemisphaerica | exon |
| TCONS_00003111-exon-sc0000025-1491911889:686642..687598 | TCONS_00003111-exon-sc0000025-1491911889:686642..687598 | Clytia hemisphaerica | exon |
| TCONS_00003111-exon-sc0000025-1510915933:686642..687598 | TCONS_00003111-exon-sc0000025-1510915933:686642..687598 | Clytia hemisphaerica | exon |
| TCONS_00003111-exon-sc0000025-1575043694:686642..687598 | TCONS_00003111-exon-sc0000025-1575043694:686642..687598 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:683108..687598 + |
Blast
The following BLAST results are available for this feature:
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