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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003129 ID=TCONS_00003129|Name=TCONS_00003129|organism=Clytia hemisphaerica|type=transcript|length=3409bp
CCATGATTAATTTATGCAGTTGCATTGAGAAAAATCTATAATTTATTTCA
ATTCTTCTTTCACTTTCACCTTCTCAGAAAATTTGGTTGAACAGTCGAGA
AGGCAAAAAAATTCCAGCTCAGCTGTCAGCACCTATCGCCAACATTGTAT
ATATTGCCAGATCAAAAAATTAGAGAACCAGAGACATTTTTTACAACAAG
TTGACAACATAAGATGGAATCTTATATCAAACTGTTACaaacttcattca
aaatgactatTTGATATtaattatttcaaatgaaaggCTATCATTACGTA
AAAGCCTCTTCAAGGCAATGGGCTTGGGGTCCTACTGCTCACTGGAAATT
ATATTTCTCACTCAAAACACTTGGACGAAGATGTGCTAGCTTTATAGCAA
GCACCAATAATGGAAACAACAATCAAGACTTAAGGCGGCGCCCAGGTAGC
CGCCACCAATACCGCTCTAGGCACACTTCTAATTTTGATGAGAGCCAATA
CCGATTTCCAGATGCCAGTGAACTAACAATGACAGATAACGAAGTCAATG
AAATCATACGTGAAAATGAAATGACAATTGAGGAATTCCCTGATTCCCAA
GTGgttgaaaaatgtgaaataaaCCAATTGAAATCAAACGAACCAAATGA
AGACCAAGTGTTTTTAACCCAATCTACTTTTAAGGAAGGATTGCTATTTG
GTGTTTTAGATGGTCATGGTGGCTCTGTTTATGGAGAACAAATGAAAGCA
AGGCTTCCTTACTATATCCACACTTCACTAGCTGATAAAAGCCAAATTTC
AGATACGCTTGATAtagaaaattttgttgaaaCTTTGAATAATGATGACG
AGTatattattgaaaattctattaaTTCTGACATTTGGGTCGAGAAGGTT
AACGAATATATGAAAGATCTGATACAGACTCATAACGAGAGCTCACCAAA
GCCAAGTTCTCCACTGACTGCGTCATTAATGCAGATGCTTGGAAAGACAG
AGGCTGAGAAAGTCAGCATAAACATAAGTAATGCTATTAAAGAGGCTTTT
ATTAAATTAGACCAAGACGTgataaaagaaattttacaCCTTGCAAATAC
TGATAAACTGTGTCAAGAAAGTTTTCATTTGGCTACTTCTGGATGTTGTG
CTTTAGTGGCTTATATCATTGAGAATGATCTACATATAGCAAACCTTGGT
GATTGCAGAGCCGTTCTAGGATCAAATAAAGATGGAAAATGGAGATCAGT
GCAATTGACTTATGACCACACTGCAGcaTCGAACTCATCGGAAGTTCAGC
GGATCATATCCGAACATCCGCCGGAAGAAGCCCGGTCATGTCTATCATAT
GGGCGGTTATTAGGGCGGTTGGCACCTTTAAGAGCACTTGGTGATATTCA
ATTCAAGCTAGAAGCTGAAGAATTATGTACAATTTTCAAGAACGTGCTTA
GATATTCACCATTTTCGTCCTCTCTAACACCACCTTACCTGATAGCAGAG
CCTGAGGTTTTTCATTACAAACTAGAGCCGTACGACCGTTTTATTGTGTT
AGCGAGCGATGGTTTATGGGACATGCTTAGTAATGATGAGGTGGTCAAGC
TTGTTGTGTCTTATTTAGAAGGCCGTAGAACGGCAGTTATGGAAGAGCAA
GCTCAATTTTATAACGTTCCGGATTGCGATCAAATCGACGCCAATACCTT
CTTGGATGTCGAAGACGAAAACGTCGCTAGTTTTCTGTTACGGCAAGCCT
TAGGTGGTTATGATAAAGTTAACCTGAAAGCCATGCTCTCTATGAAATAT
CCTGATACTAGGCTATATAGGGATGATATCTCGATCATGGTGGTGTTTTT
GTCGAACCCGAATGACGAAAGTTTTGCTATAGTTGATACACCGAGTGGTG
AATTAGAGTGATGTATTGACCAGTTATTTAAAACTGTAATTTTAGCTTAG
AGAAACTTTTGCGGGATTACGTTTCATAACGTGTGTTTCAGAACCTACAA
TATTGAAAGaccgaattttgaaaaattaaacccagtgggttttttcacct
ttcgaATTTCGATACTCGATACTTGATAAATTTGTATCAATTTTGTATCT
TAAAAATATACTAGATTCCGTAAGAGTTTCACCCATTTGACTTTGTGATG
TATATATTTTATTGGTGACAAAAGTTATTTCTTTTTCTGATTTGAAGCTC
CTGTCGACATGCTTTTCAAGTTCTTGTTGTCGGGAAGGAAAAACAAACTG
GCACATGACGTTTGtataacgttcatctaacgttatttggacgttactGA
CGTCAGattgacgttgttttgacgttcgTACCGGTGGAGAAGTAAACTGA
TTGGCGTGTTAGCGAAATTTATTCCCAAATGATTTAATAACATGCGCGCG
CTAATTTGACGACTTCAAAAATAATACAAGTATCAAAAGTATGCCAAATA
TGCCTTTGCGACTAATTTTTACTGTTTGTGTTCTGTTTCAAAGAGATTAT
AAAATTGAcaatgataaaatatattaatattaTTACGACCTTTCCAGGCT
AAAATTCTAGAGTACTCAAtaaagtataagcccgaagggctagaatcgaa
tctttcACCtctctcaggcaagaaaaagtgaagccttaaaatatacgacg
tatttttgatgacgggcTGGATTtagcgatttctttgttttcgagtgata
tatttttttaaatctaacaaaaaattttctacCAAGGAGACACGattcta
gcctttcgggcttatacttcattgaaaATACTGGATTACAGCCAACCtag
ctttattttttgaattagaTCACTCTTGTTAATGACTAGATATTGGTCGC
ACTACGAAGTCTAAAGAATAACATGGTTCTTAGATTCTGAGCGTATTTTG
TCCATCAgggttttttagttttttttccgCGAAAGCTTTTGCTTTTCGcc
ttttcctttttctatacGCGCAATTTTAGATATGTTCCAGTTTCCAAAAA
AATCGAAGTATTCAGGGAAAACAATGGACCGTTTGAgggaatgaagccat
tctattggttagaaatgACGTAAGTTCTTACAATAAACCAATAGAATCCT
TCTATTCCTTGTTAGCAACATGGTTACCTTCCTCTAATACTtcgttttta
cattttcttatctttcatttttttgtttctataggcacatttttttttta
ttttacaatttgtaaatttgatgtAATATTGATTTGAACGTCAAAGTGAA
ACATTGCTTTCTCAGTTAGGCTTCTTTTCTGGACCAACtatttaaggctt
ggggacacgagaagttcttttcacgttggtgcaatgcaacatgctccatc
ctaCCAACCTGGAACGTTTTCTCCCCTTTCTcgtgtccctgggacaatgg
agcaaaatt Run BLAST on NCBI protein sequence of TCONS_00003129-protein >TCONS_00003129-protein ID=TCONS_00003129-protein|Name=TCONS_00003129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp
MKGYHYVKASSRQWAWGPTAHWKLYFSLKTLGRRCASFIASTNNGNNNQD
LRRRPGSRHQYRSRHTSNFDESQYRFPDASELTMTDNEVNEIIRENEMTI
EEFPDSQVVEKCEINQLKSNEPNEDQVFLTQSTFKEGLLFGVLDGHGGSV
YGEQMKARLPYYIHTSLADKSQISDTLDIENFVETLNNDDEYIIENSINS
DIWVEKVNEYMKDLIQTHNESSPKPSSPLTASLMQMLGKTEAEKVSINIS
NAIKEAFIKLDQDVIKEILHLANTDKLCQESFHLATSGCCALVAYIIEND
LHIANLGDCRAVLGSNKDGKWRSVQLTYDHTAASNSSEVQRIISEHPPEE
ARSCLSYGRLLGRLAPLRALGDIQFKLEAEELCTIFKNVLRYSPFSSSLT
PPYLIAEPEVFHYKLEPYDRFIVLASDGLWDMLSNDEVVKLVVSYLEGRR
TAVMEEQAQFYNVPDCDQIDANTFLDVEDENVASFLLRQALGGYDKVNLK
AMLSMKYPDTRLYRDDISIMVVFLSNPNDESFAIVDTPSGELE Run BLAST on NCBI transcript from alignment at sc0000025:855401..863943+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003129 ID=TCONS_00003129|Name=TCONS_00003129|organism=Clytia hemisphaerica|type=transcript|length=8543bp|location=Sequence derived from alignment at sc0000025:855401..863943+ (Clytia hemisphaerica)
CCATGATTAATTTATGCAGTTGCATTGAGAAAAATCTATAATTTATTTCA
ATTCTTCTTTCACTTTCACCTTCTCAGAAAATTTGGTTGAACAGTCGAGA
AGGCAAAAAAATTCCAGCTCAGCTGTCAGCACCTATCGCCAACATTGTAT
ATATTGCCAGATCAAAAAATTAGAGGTAAGTCTGCTCCCCACAATGTTCA
GGATCTAAATTTCTTATTCTTCTCTGATATCTTAATCCGAAAATTTGCCA
CAAGAGTCATCTCAGGAACAACAGGGAGGGATGTCTGGAGGTGGGATTAT
TTAGTTTTGTGTGTTATATTGTTCAAGTTATTGGAGATTAAAGTTTTAAC
CAAGAAATTTTTGTGAAGTTTAGCTTAGAGCAGTTTTACAGTCCTTTTCA
GCTTTTCAGGCCAAATTCCTGTGTATTTTTTGTGATGTTGATAAGTTCTC
TCTCGATCTCGTGTTCTTTTAACGCACCAGACCAGACGGACATCGTTATA
TCGAGTCGCCTAAAGTTACCTTCGTTTTTTTCTTATCCACGaatcgctga
tagtcaccccggaatgagatgggggttcggttattatcagttagggtcag
ttTGGtttaatatgttatgaattgtgtgATTACTTTGCTGTGCGTCATTG
GCTCAACGAACGGATAAGGCGTTGGTTTCCAAatccgaaggtctttcttt
gatGGTGGTTCGAACCCAACACGGTGCGATGATATGACCGGTCAAAATAT
GATACAGGTATGAAAACTTAGTCAGAattgagaaactaagtctcagaagc
tcagacagtcagaaaagagaaagacagtATCAGAgataggaaaagaaaaa
tggtgACTATTGGCGATCCGATATAACTTCTTCCGCCCCAGACAACTGCT
GAAAAAAAGGCTAAGATAGACTtagcttttttatcttttctattCCAACA
ATGCAATACTTCCATTGTACGACCACACAGGGTCAGCCCAGgtctaggtc
ccaggcaaaaaaataggtccccccaaattttaaatgttttttaagcAGCC
CTTAGTACTAGTATACCTAggtataaaataaatatttgttgATTTGATAT
CATTTTTTTGTCATCTCTATTCTTTTGTCATTCTCAAAATCTTAACAGTT
TTCAAGATGTGAAAAGGCCTAAAATTCGGGCAAACTGGGTAAGCAATTTT
ATAAGATTTTGATTTAGAAGGGttagactttttcaaaaaaaatttaaaga
agttTGTGAtagaaaatcataaaaaatttcCTCAGTTGAATTGTAAattg
tttttacattttgtcATTTGGAAATGTTTATAAGTATCAATTTGTAAAAT
ACGTTGCAAAAATCACCAGTTTTGGGAAAAATGGTCTCAAAAagagggtt
ggtgtaatttaaagggataaccagataaaTCCCATGGTACTTAGTAAAac
cacaaaatatttttaagagaAAACATTCTGAAGAAGATATATGACAGttt
gaaatttcagattttcGTACGATACTATTAAACTAATatataaacaaact
ttttaaacaaacagattttttcatcttcataagATCGATTCTCAACCACA
AAATACATATTTTGGTCAATAGACGttctttcttcaaagaatatcgatca
ctttcgttttcccctaaGATAATAGAGATGAGGCAGTAATCATGGCCCGG
GGCGCTACTTCTGCCTTATTTTGCGTCCACGATAGAATGATCGAAATATA
ATGATATAATGATAaacaatcaaatctcaatttgtaagtgtttattttct
gaaatataCAAAAAGTACATCAATATCATTGATATTTTCAGCATGTGATA
GCGTAAATTTAGATATATTGTGGctaaataaaaagcaaatgatggcagtt
ctgttttttcctcaaaccaccgggaaaattgtttttgccgaccttagcta
ttttacaaatctcggaaaagaactcccataggaattccaaTACATAACCT
GATTGGTAAATTTTGGAGCTGCTttaagaaagtcataatggcagataatt
ctAAAAGTTTCTGATGAGGAAGTGTGTGGAATTTAACAATGTTGAATGTT
GGCTTGTTGAttgttcaaagaaaaaagataacaggtatagctttttctaa
tccccGGAATATCAATTCCAGCCGTGCTGTATTTATAAACATTTGAGtga
ccagatagttgctatgacgGAACTAGACAAGGTATGCCAGCATTACACAA
AGTTATGGTATGGAAGGAATCTTTTGGttgaattcattttttatctggtt
atccctttaagaTGCACAATCTAACGATCAGTTTACAATGTACAGCCTGT
GATCCATGCATAAAATAAGTTAATTTGTGcttagaaaataatttattttg
gcaaattaCAAAGTTTTATTTGCTGGAACTCAattattttaagaaacaaa
atagaccttttgctaggtGTTATGTCAAGttggaaaattaaaaactccag
cataaATTGCGATAACTCCATGTGCCAATGGATGCAAGAAAAGCTGTggt
tattgttgttgtttcccATTGAAATGTTGAGTTTTTAATTATCCAACATG
ACATCGGGCTATTGGATAACAAAAAACATGTCTTCACGACTGTTGcaatt
taacaaaataaaacaattcacATATTTTCAAGAGGGTAGATTATTAGTTT
TTCTTCTACTTCTTCATGTATGCCAATCAGGGAAGACTTAAAATAAAACT
CACGAAACAAATCCCCAAGATTGGCAAAAGTCACTTGTGCCCACTCACTG
CTTGAGTCTTTTATTGCTTTCTTTTATTGATTGCTTAATTCATTGATGAC
TTGTTAGTCATTAAAATGAAATCCAATTGCCATGATATCAAGTGTTTAAA
AGTAACATCCAATCAAATGAAAGTTAAGCACTTTTATCCAATCAACAAAC
CAGAAAGAATTTTTGACAATCTAAATCTTGCAACAAATTCAATCCTCAGA
AATGCTGACTGAAACAAATAAAGATGTCGTTAATAGGGTGGACAGTTTTA
AGACCGTCTGTCAGATGAAAAGGCATTTGCGCAAAAAATTAGGACCAGTG
GTTATTAGCCTTTATCACATTAGGTAATCATATTGGTTGACTTTCCAATG
GAGCAACTTACAGAAGCtctcagtagaagagaccaaaGAGTCcttttttt
tattgcaaatttcaatataaacaaaaatttttgtttttgagtttaTCTGT
CAACTAAATGGAAGCTTTGTATTGTTGaaatgtaaaaaagaaaataggTA
TTAAAGTCTAGTGTTGCCTTATTGTCAGCTGTCAGGGATGTTAGAAATAA
CATGAGAGCTTATATatatcaaaatgaaaacacGATCCTGCTTAATGAAC
TGTAGATAAAAAATCTTACAAACTCACTTTTTCTTAAGAAGATTTTACCA
TTTCCTTGTTTCTTAAAGACAAATGCTACTCATTAAGAGACTCCAGTATA
AGACTATTGTGTAGTGAACAGTGTAAAGATAGGGTCTACCAGAACGAACT
ACCTTCCCCTGTTTGTATATCCGTCGATTGAAATATTTCTATTCCAAACA
TTTTAAACTGAAGTACAATTATTTGCAAATGAATGGACCTGCACTAGTGA
TTAGAGGTCAAATCAGTAAAatggatgaaaagaagaaaaaaggggaaaaa
caCATACAGAACTTGAACCCCAAGCTGGAATGAAACAGGGATCTCTTTTA
GGCTCTAAAGATATctgtcccaaatttaccaattttcaaaatttttaggg
TAGACTTttggcttttttagaaaaaataggaaaaaaggaaaatttttcta
gcATTTGTTCTTACAGGATCCAAAATTTAGTAGACATCTGACAGGGtcaa
attttctcctgtcgtcGAGGTCAGTGCCCTTCTGGGAGATATTATAGATT
GAATGATTGAGAGCCTAGAATGAAGAAAAagtattgttttcaaaaaatgt
taaacTCTTCTGCAGGAAAATAATTGTGTCGGTGTAGGGTGTGTAAAGCT
AAGACAAGTTGTATAAACTTTGAGCTAAATTCTAACTGATTGAAGAAGTT
ATAgattttgtgtgtttttttccGAATTTTTAAGTAGCATAATTTGCATG
CTTATGATCAGTAAAAAGTAGGTAATTATAGAGGTAATAATACTGAtctg
atatttcaatttgaaaaaatctcattttggTTTTCAAGGTTGCTTTGATG
ATCAGGGCTTTAATTTGGAACAATCTTAGAAAGATTCCACTAGTTTATAC
CTAATTAGCTAATTAGTAAGTAAAGTTTTTCTTAAATTCTAcaattttct
gttgttttttttctagtTAAATTTTGCCCAGTTTAGTTATAACATATTGG
TTATTCAGATAAAGGAAATACTTTGGCTTGATGTAAAACAGTgctgtttc
tttcttttttcaattgaaaTATTTCTATAAAGCTGAAAGATTATTTACAT
TCTTTATATCTTAATGTGGCTTTATCTtcttaaagatttgaaaattatga
tttgcACAAAACACTTGACATTTTATCTTTCTAACATTTTAGAACCAGAG
ACATTTTTTACAACAAGTTGACAACATAAGATGGAATCTTATATCAAACT
GTTACaaacttcattcaaaatgactatTTGATATtaattatttcaaatga
aaggCTATCATTACGTAAAAGCCTCTTCAAGGCAATGGGCTTGGGGTCCT
ACTGCTCACTGGAAATTATATTTCTCACTCAAAACACTTGGACGAAGATG
TGCTAGCTTTATAGCAAGCACCAATAATGGAAACAACAATCAAGACTTAA
GGCGGCGCCCAGGTAGCCGCCACCAATACCGCTCTAGGCACACTTCTAAT
TTTGATGAGAGCCAATACCGATTTCCAGATGCCAGTGAACTAACAATGAC
AGATAACGAAGTCAATGAAATCATACGTGAAAATGAAATGACAATTGAGG
AATTCCCTGATTCCCAAGTGgttgaaaaatgtgaaataaaCCAATTGAAA
TCAAACGAACCAAATGAAGACCAAGTGTTTTTAACCCAATCTACTTTTAA
GGAAGGATTGCTATTTGGTGTTTTAGATGGTCATGGTGGCTCTGTTTATG
GAGAACAAATGAAAGCAAGGCTTCCTTACTATATCCACACTTCACTAGCT
GATAAAAGCCAAATTTCAGATACGCTTGATAtagaaaattttgttgaaaC
TTTGAATAATGATGACGAGTatattattgaaaattctattaaTTCTGACA
TTTGGGTCGAGAAGGTTAACGAATATATGAAAGATCTGATACAGACTCAT
AACGAGAGCTCACCAAAGCCAAGTTCTCCACTGACTGCGTCATTAATGCA
GATGCTTGGAAAGACAGAGGCTGAGAAAGTCAGCATAAACATAAGTAATG
CTATTAAAGAGGCTTTTATTAAATTAGACCAAGACGTgataaaagaaatt
ttacaCCTTGCAAATACTGATAAACTGTGTCAAGAAAGTTTTCATTTGGC
TACTTCTGGATGTTGTGCTTTAGTGGCTTATATCATTGAGAATGATCTAC
ATATAGCAAACCTTGGTGATTGCAGAGCCGTTCTAGGATCAAATAAAGAT
GGAAAATGGAGATCAGTGCAATTGACTTATGACCACACTGCAGGTTggtt
atttttttctcttttccaattttgaattcaaGAGTCTTTTAACTTGGAAG
CTTTAAACTGAGGTTTTTTACAACTCGCGATAACTTAAAAATTGAAGTTA
ATAAATGGGTTTGTAATATCTATCAAGTTTCATTTATGACTTATGTTGTG
ATTTCAAATcgaatctttttcttttattctggGCACTTGACCTGAAGCTC
ATTCAAGAATCCTATCTTGAAATGTTTCATGTCAGTATAACTTGCATGCT
CTTTTAAACtggaattttttgtttttaagtatcCCATGTTGTTTTTAAAA
CATATTGCATATTGTGtgcaaaaataatttgatcaaaaaTTTATACTTTA
CGTTACTATCATTTCCCTATAGCCCAAAAAGTTAATGCAAAGGATAAATA
CTTTTGAATTattcaaaattgacaaaatgttTACCCTAGAAAAATTCAAT
TATTAAAATAATATGGTCGGGATTTAatcaaaatttggtaaaatagaata
aaatatgCATATCTGCCAGTTTatgaataattgaaaattgataaaaaaat
ttattaaattcTGTGTATGTCATTGATAAGAATCTTGTAAAATTTGGCAG
CTTTTTGCAAGAGGGTAAAAAGGAAGGGACGAAGCATACTTGTAAAAAAT
GCCTTTTCATTGATATTTTATtaatatttattgatttttttactttgttt
tttcattcagcaTCGAACTCATCGGAAGTTCAGCGGATCATATCCGAACA
TCCGCCGGAAGAAGCCCGGTCATGTCTATCATATGGGCGGTTATTAGGGC
GGTTGGCACCTTTAAGAGCACTTGGTGATATTCAATTCAAGCTAGAAGCT
GAAGAATTATGTACAATTTTCAAGAACGTGCTTAGATATTCACCATTTTC
GTCCTCTCTAACACCACCTTACCTGATAGCAGAGCCTGAGGTTTTTCATT
ACAAACTAGAGCCGTACGACCGTTTTATTGTGTTAGCGAGCGATGGTTTA
TGGGACATGCTTAGTAATGATGAGGTGGTCAAGCTTGTTGTGTCTTATTT
AGAAGGCCGTAGAACGGCAGTTATGGAAGAGCAAGCTCAATTTTATAACG
TTCCGGATTGCGATCAAATCGACGCCAATACCTTCTTGGATGTCGAAGAC
GAAAACGTCGCTAGTTTTCTGTTACGGCAAGCCTTAGGTGGTTATGATAA
AGTTAACCTGAAAGCCATGCTCTCTATGAAATATCCTGATACTAGGCTAT
ATAGGGATGATATCTCGATCATGGTGGTGTTTTTGTCGAACCCGAATGAC
GAAAGTTTTGCTATAGTTGATACACCGAGTGGTGAATTAGAGTGATGTAT
TGACCAGTTATTTAAAACTGTAATTTTAGCTTAGAGAAACTTTTGCGGGA
TTACGTTTCATAACGTGTGTTTCAGAACCTACAATATTGAAAGaccgaat
tttgaaaaattaaacccagtgggttttttcacctttcgaATTTCGATACT
CGATACTTGATAAATTTGTATCAATTTTGTATCTTAAAAATATACTAGAT
TCCGTAAGAGTTTCACCCATTTGACTTTGTGATGTATATATTTTATTGGT
GACAAAAGTTATTTCTTTTTCTGATTTGAAGCTCCTGTCGACATGCTTTT
CAAGTTCTTGTTGTCGGGAAGGAAAAACAAACTGGCACATGACGTTTGta
taacgttcatctaacgttatttggacgttactGACGTCAGattgacgttg
ttttgacgttcgTACCGGTGGAGAAGTAAACTGATTGGCGTGTTAGCGAA
ATTTATTCCCAAATGATTTAATAACATGCGCGCGCTAATTTGACGACTTC
AAAAATAATACAAGTATCAAAAGTATGCCAAATATGCCTTTGCGACTAAT
TTTTACTGTTTGTGTTCTGTTTCAAAGAGATTATAAAATTGAcaatgata
aaatatattaatattaTTACGACCTTTCCAGGCTAAAATTCTAGAGTACT
CAAtaaagtataagcccgaagggctagaatcgaatctttcACCtctctca
ggcaagaaaaagtgaagccttaaaatatacgacgtatttttgatgacggg
cTGGATTtagcgatttctttgttttcgagtgatatatttttttaaatcta
acaaaaaattttctacCAAGGAGACACGattctagcctttcgggcttata
cttcattgaaaATACTGGATTACAGCCAACCtagctttattttttgaatt
agaTCACTCTTGTTAATGACTAGATATTGGTCGCACTACGAAGTCTAAAG
AATAACATGGTTCTTAGATTCTGAGCGTATTTTGTCCATCAgggtttttt
agttttttttccgCGAAAGCTTTTGCTTTTCGccttttcctttttctata
cGCGCAATTTTAGATATGTTCCAGTTTCCAAAAAAATCGAAGTATTCAGG
GAAAACAATGGACCGTTTGAgggaatgaagccattctattggttagaaat
gACGTAAGTTCTTACAATAAACCAATAGAATCCTTCTATTCCTTGTTAGC
AACATGGTTACCTTCCTCTAATACTtcgtttttacattttcttatctttc
atttttttgtttctataggcacattttttttttattttacaatttgtaaa
tttgatgtAATATTGATTTGAACGTCAAAGTGAAACATTGCTTTCTCAGT
TAGGCTTCTTTTCTGGACCAACtatttaaggcttggggacacgagaagtt
cttttcacgttggtgcaatgcaacatgctccatcctaCCAACCTGGAACG
TTTTCTCCCCTTTCTcgtgtccctgggacaatggagcaaaatt Coding sequence (CDS) from alignment at sc0000025:855401..863943+ >TCONS_00003129 ID=TCONS_00003129|Name=TCONS_00003129|organism=Clytia hemisphaerica|type=CDS|length=3264bp|location=Sequence derived from alignment at sc0000025:855401..863943+ (Clytia hemisphaerica)
atgaaaggCTATCATTACGTAAAAGCCTCTTCAAGGCAATGGGCTTGGGG
TCCTACTGCTCACTGGAAATTATATTTCTCACTCAAAACACTTGGACGAA
GATGTGCTAGCTTTATAGCAAGCACCAATAATGGAAACAACAATCAAGAC
TTAAGGCGGCGCCCAGGTAGCCGCCACCAATACCGCTCTAGGCACACTTC
TAATTTTGATGAGAGCCAATACCGATTTCCAGATGCCAGTGAACTAACAA
TGACAGATAACGAAGTCAATGAAATCATACGTGAAAATGAAATGACAATT
GAGGAATTCCCTGATTCCCAAGTGgttgaaaaatgtgaaataaaCCAATT
GAAATCAAACGAACCAAATGAAGACCAAGTGTTTTTAACCCAATCTACTT
TTAAGGAAGGATTGCTATTTGGTGTTTTAGATGGTCATGGTGGCTCTGTT
TATGGAGAACAAATGAAAGCAAGGCTTCCTTACTATATCCACACTTCACT
AGCTGATAAAAGCCAAATTTCAGATACGCTTGATAtagaaaattttgttg
aaaCTTTGAATAATGATGACGAGTatattattgaaaattctattaaTTCT
GACATTTGGGTCGAGAAGGTTAACGAATATATGAAAGATCTGATACAGAC
TCATAACGAGAGCTCACCAAAGCCAAGTTCTCCACTGACTGCGTCATTAA
TGCAGATGCTTGGAAAGACAGAGGCTGAGAAAGTCAGCATAAACATAAGT
AATGCTATTAAAGAGGCTTTTATTAAATTAGACCAAGACGTgataaaaga
aattttacaCCTTGCAAATACTGATAAACTGTGTCAAGAAAGTTTTCATT
TGGCTACTTCTGGATGTTGTGCTTTAGTGGCTTATATCATTGAGAATGAT
CTACATATAGCAAACCTTGGTGATTGCAGAGCCGTTCTAGGATCAAATAA
AGATGGAAAATGGAGATCAGTGCAATTGACTTATGACCACACTGCAGcaT
CGAACTCATCGGAAGTTCAGCGGATCATATCCGAACATCCGCCGGAAGAA
GCCCGGTCATGTCTATCATATGGGCGGTTATTAGGGCGGTTGGCACCTTT
AAGAGCACTTGGTGATATTCAATTCAAGCTAGAAGCTGAAGAATTATGTA
CAATTTTCAAGAACGTGCTTAGATATTCACCATTTTCGTCCTCTCTAACA
CCACCTTACCTGATAGCAGAGCCTGAGGTTTTTCATTACAAACTAGAGCC
GTACGACCGTTTTATTGTGTTAGCGAGCGATGGTTTATGGGACATGCTTA
GTAATGATGAGGTGGTCAAGCTTGTTGTGTCTTATTTAGAAGGCCGTAGA
ACGGCAGTTATGGAAGAGCAAGCTCAATTTTATAACGTTCCGGATTGCGA
TCAAATCGACGCCAATACCTTCTTGGATGTCGAAGACGAAAACGTCGCTA
GTTTTCTGTTACGGCAAGCCTTAGGTGGTTATGATAAAGTTAACCTGAAA
GCCATGCTCTCTATGAAATATCCTGATACTAGGCTATATAGGGATGATAT
CTCGATCATGGTGGTGTTTTTGTCGAACCCGAATGACGAAAGTTTTGCTA
TAGTTGATACACCGAGTGGTGAATTAGAGTGAatgaaaggCTATCATTAC
GTAAAAGCCTCTTCAAGGCAATGGGCTTGGGGTCCTACTGCTCACTGGAA
ATTATATTTCTCACTCAAAACACTTGGACGAAGATGTGCTAGCTTTATAG
CAAGCACCAATAATGGAAACAACAATCAAGACTTAAGGCGGCGCCCAGGT
AGCCGCCACCAATACCGCTCTAGGCACACTTCTAATTTTGATGAGAGCCA
ATACCGATTTCCAGATGCCAGTGAACTAACAATGACAGATAACGAAGTCA
ATGAAATCATACGTGAAAATGAAATGACAATTGAGGAATTCCCTGATTCC
CAAGTGgttgaaaaatgtgaaataaaCCAATTGAAATCAAACGAACCAAA
TGAAGACCAAGTGTTTTTAACCCAATCTACTTTTAAGGAAGGATTGCTAT
TTGGTGTTTTAGATGGTCATGGTGGCTCTGTTTATGGAGAACAAATGAAA
GCAAGGCTTCCTTACTATATCCACACTTCACTAGCTGATAAAAGCCAAAT
TTCAGATACGCTTGATAtagaaaattttgttgaaaCTTTGAATAATGATG
ACGAGTatattattgaaaattctattaaTTCTGACATTTGGGTCGAGAAG
GTTAACGAATATATGAAAGATCTGATACAGACTCATAACGAGAGCTCACC
AAAGCCAAGTTCTCCACTGACTGCGTCATTAATGCAGATGCTTGGAAAGA
CAGAGGCTGAGAAAGTCAGCATAAACATAAGTAATGCTATTAAAGAGGCT
TTTATTAAATTAGACCAAGACGTgataaaagaaattttacaCCTTGCAAA
TACTGATAAACTGTGTCAAGAAAGTTTTCATTTGGCTACTTCTGGATGTT
GTGCTTTAGTGGCTTATATCATTGAGAATGATCTACATATAGCAAACCTT
GGTGATTGCAGAGCCGTTCTAGGATCAAATAAAGATGGAAAATGGAGATC
AGTGCAATTGACTTATGACCACACTGCAGcaTCGAACTCATCGGAAGTTC
AGCGGATCATATCCGAACATCCGCCGGAAGAAGCCCGGTCATGTCTATCA
TATGGGCGGTTATTAGGGCGGTTGGCACCTTTAAGAGCACTTGGTGATAT
TCAATTCAAGCTAGAAGCTGAAGAATTATGTACAATTTTCAAGAACGTGC
TTAGATATTCACCATTTTCGTCCTCTCTAACACCACCTTACCTGATAGCA
GAGCCTGAGGTTTTTCATTACAAACTAGAGCCGTACGACCGTTTTATTGT
GTTAGCGAGCGATGGTTTATGGGACATGCTTAGTAATGATGAGGTGGTCA
AGCTTGTTGTGTCTTATTTAGAAGGCCGTAGAACGGCAGTTATGGAAGAG
CAAGCTCAATTTTATAACGTTCCGGATTGCGATCAAATCGACGCCAATAC
CTTCTTGGATGTCGAAGACGAAAACGTCGCTAGTTTTCTGTTACGGCAAG
CCTTAGGTGGTTATGATAAAGTTAACCTGAAAGCCATGCTCTCTATGAAA
TATCCTGATACTAGGCTATATAGGGATGATATCTCGATCATGGTGGTGTT
TTTGTCGAACCCGAATGACGAAAGTTTTGCTATAGTTGATACACCGAGTG
GTGAATTAGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003129-exon-sc0000025-1491911889:855401..855575 | TCONS_00003129-exon-sc0000025-1491911889:855401..855575 | Clytia hemisphaerica | exon |
| TCONS_00003129-exon-sc0000025-1510915933:855401..855575 | TCONS_00003129-exon-sc0000025-1510915933:855401..855575 | Clytia hemisphaerica | exon |
| TCONS_00003129-exon-sc0000025-1575043694:855401..855575 | TCONS_00003129-exon-sc0000025-1575043694:855401..855575 | Clytia hemisphaerica | exon |
| TCONS_00003129-exon-sc0000025-1491911889:859993..861093 | TCONS_00003129-exon-sc0000025-1491911889:859993..861093 | Clytia hemisphaerica | exon |
| TCONS_00003129-exon-sc0000025-1510915933:859993..861093 | TCONS_00003129-exon-sc0000025-1510915933:859993..861093 | Clytia hemisphaerica | exon |
| TCONS_00003129-exon-sc0000025-1575043694:859993..861093 | TCONS_00003129-exon-sc0000025-1575043694:859993..861093 | Clytia hemisphaerica | exon |
| TCONS_00003129-exon-sc0000025-1491911889:861811..863943 | TCONS_00003129-exon-sc0000025-1491911889:861811..863943 | Clytia hemisphaerica | exon |
| TCONS_00003129-exon-sc0000025-1510915933:861811..863943 | TCONS_00003129-exon-sc0000025-1510915933:861811..863943 | Clytia hemisphaerica | exon |
| TCONS_00003129-exon-sc0000025-1575043694:861811..863943 | TCONS_00003129-exon-sc0000025-1575043694:861811..863943 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:855401..863943 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001932 | PPM-type_phosphatase_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00003129 vs. Swiss-Prot (Human)
Match: PDP2 ([Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 2, mitochondrial OS=Homo sapiens GN=PDP2 PE=2 SV=2) HSP 1 Score: 200.29 bits (508), Expect = 2.695e-54 Identity = 163/505 (32.28%), Postives = 247/505 (48.91%), Query Frame = 1
Query: 469 RHTSNFDESQYRFPDASELTMTDNEVNEIIRENEMTIE------EFPDSQVVEKCEINQLKSNEPNEDQVFLTQSTFKEGLLFGVLDGHGGSVYGEQMKARLPYYIHTSLADKSQISDTLDIENFVETLN------------NDDEYIIENSINSDIWVEKVNEYMKDLIQTHNESSPKPSSPLTASLMQMLGKTEAEKVSINISNAIKEAFIKLDQDVIKEILHLANTDKLCQESFHLATSGCCALVAYIIENDLHIANLGDCRAVLGSNKD-GKWRSVQLTYDHTAASNSSEVQRIISEHPPEEARSCLSYXXXXXXXXXXXXXXDIQFKLEAEELCTIFK--------NVLRYSPFSSSLTPPYLIAEPEVFHYKLEPYDRFIVLASDGLWDMLSNDEVVKLVVSYL---EGRRTAVMEEQAQFYNVPDCDQIDANTFLDVEDENVASFLLRQALGG--YDKV---NLKAMLSMKYPDTRLYRDDISIMVVFLSNPNDESFA 1878
RHTS + D L ++ ++NE++R E T + P+S V + E NQL +N P ED+ + GL+FG+ DGHGG + + RL YY+ SL + +E +E++ D Y S++ D + Y ++L+ H E + ++I A+ +F +LD D+ EI + S +A SG A +A++ LH+AN GDCRA+LG +D G W + LT DH A N +E+ R+ EHP E R+ + RLLG L P RA GD+Q K E +I + N+ +++P TPPYL AEPEV +++L P D+F+VLASDGLWDMLSN++VV+LVV +L + +T + + A + + L D+N A+ L+R A+G Y ++ L AML++ R+YRDDI++ VV+ N ES
Sbjct: 64 RHTSTEE-------DDFHLQLSPEQINEVLRAGETTHKILDLESRVPNS--VLRFESNQLAANSPVEDRRGVASCLQTNGLMFGIFDGHGGHACAQAVSERLFYYVAVSLMSHQTLE---HMEGAMESMKPLLPILHWLKHPGDSIYKDVTSVHLD----HLRVYWQELLDLHME------------------------MGLSIEEALMYSFQRLDSDISLEIQAPLEDEVTRNLSLQVAFSGATACMAHVDGIHLHVANAGDCRAILGVQEDNGMWSCLPLTRDHNAW-NQAELSRLKREHPESEDRTIIMEDRLLGVLIPCRAFGDVQLKWSKELQRSILERGFNTEALNIYQFTP-PHYYTPPYLTAEPEVTYHRLRPQDKFLVLASDGLWDMLSNEDVVRLVVGHLAEADWHKTDLAQRPANLGLMQSLLLQRKASGLHEADQNAATRLIRHAIGNNEYGEMEAERLAAMLTLPEDLARMYRDDITVTVVYF---NSESIG 523
The following BLAST results are available for this feature:
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