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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003130 ID=TCONS_00003130|Name=TCONS_00003130|organism=Clytia hemisphaerica|type=transcript|length=1847bp
ACCAggtcaaaaaaaatcacaaaataacaaaaaaattagaaaatatttaG
TTGAAAGCCATGGACAAAATAACGAAGATATTTGCAGATGTATTCAATGA
ACAAACTTGGCATAAAGTGAAAGATAACACATTAGCATTTTCTGGCTTGA
TATTTGGTGTTCTGGTGGTTTTCGTCCTCATTGCTATTGGTTGGTTTGTT
GtatggaaaatgtttttagtTCGATTCCCATTGATACGCGAGCTGGTGTA
CGGTAGCAGTGCGGAGAGTGAACATAAATTAAAATCCAAAAGGACGTCAT
CTGCGTCCAGTCAGAATGGATTACAACCACGACGAAGCGCTCGGTTACGG
CAGAAGCAAGCATCAGTTGATACTGTCGATGAATAATAAATCAAATAATA
TTAATGGActtgtttatgaaattttgaactgATTTTTAAAACGGATGTTT
TAATGTGCACAGACCAATGTCAATCGAATAATAAACCTGGTCTGGAAGTC
GGGCTGTATTGAATTTAGAGGATGGTAAGtaaaatgggctattccagaaa
aaatttgtaccccctatgttgaggagatcttttttttttaaggtgacccc
cctggattttttttcaccttggatttttttctcccatttctttggaccac
cctggattttcgacctcgttatactgaccaccctggattttcagcCCGAT
TTTACTGACTCCCCtggattttatcattcaaaaaactAGACcgccctgga
ttttttatttttcagaccacccaggacgtcacacctcctgaacatagggg
gtacagactatttctggaatagccccaTCGGGGAAGTTGTTGCANTTTAT
TTTTCAGACCACCcaggacgtcacacctcctgaacatagggggtacagac
tatttctggaatagccccaTCGGGGAAGTTGTTGCATTGGAATGGAAATG
TTATTCACCCAATTAAACTAATTCAGATTTTCTATCGATATTGATCATCT
TTGATCATGTGACCCAAGGAACTTTtaataaaacattttataaATCTCTT
TTATTTAAAGTTTCTTGCGTGACCGATATAAAACAATTCAACCTTTTTGC
TTACGTCTCCTAGCCACCAGTTAGATATTGAACTAATTCTACTggttttc
gtttttttgggTACGAATCTCTGAAGGTTTTCTCATTCAGACAAGAGCAT
TGTAAATACATGGTAACACGAcgtttgtttcaaattttatcgGGAGGTGT
TATAGTTTGAGTGTACCTCACAGATTTAGAAAGCCcgaacccgaagggct
agacgtcgtactttaagccatcgcaagcaaaaaaaagtgactATCGGAAA
AAGTAttattgctattgttttcggaaaacccgcgaagcttctgattggtc
aagagctgaaattctattgtaatttcACATGACATAGGTAGGATTttcta
cctaaccacggcacactttcagtcgaagcacgacatctacccttcgggct
ttataaatctaagGTGTACCTACCATTTCAAGAGTAAATGTTACTTGCCT
ACTTTGATAAAATTAATATTGTTTTAAAAGCCTTCGTTTTAATAGAGGTC
CAATGCACTTATGGCAATTGTTACACATTTTTGGTTTCGATTTTGTTTGG
GTGGCACAACACCAGTCAAGGGAAGGAAGAAGTTTCGCATGATTTCAATT
AATGAGGATAATAAGAATTCTGATAATgaatctattttgaagattaaTTC
TATACTTTAATTCTGTTGAATCGTCATATAATGGCTCTCTACATAATCAA
CATTTTTTCGGACAGATAAAAACCACTTTttcattccaaaaaaaaac Run BLAST on NCBI transcript from alignment at sc0000025:864428..866920+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003130 ID=TCONS_00003130|Name=TCONS_00003130|organism=Clytia hemisphaerica|type=transcript|length=2493bp|location=Sequence derived from alignment at sc0000025:864428..866920+ (Clytia hemisphaerica)
ACCAggtcaaaaaaaatcacaaaataacaaaaaaattagaaaatatttaG
TTGAAAGCCATGGACAAAATAACGAAGATATTTGCAGATGTATTCAATGA
ACAAACTTGGCATAAAGTGAAAGATAACACATTAGCATTTTCTGGCTTGA
TATTTGGTGTTCTGGTGGTTTTCGTCCTCATTGCTATTGGTAAGATGCGT
TTACTAGATAAttaacacccctgtttcaatACTCCGGTCGTCgttcacat
gactaaaggttcaatctcaaaattagtaccttacaaaattcaaagtttta
ctgtggtggtcaTCTTAGATTGAGACTGCCCTTTTTCATGTAGAGGAATA
GTCAATGTTTTCATATGACAAAAGGCCACTCTCAAAACCAGAACAGAATT
GCAAGATTTCAATTTTCCAAGACTctgattttgagattgaactTTCAGTC
ATGTGAACGACGCGGTGTAACTTCCAACTTATTTGTGAAAAGGGGTTATT
ACCTAATTTACACCCTCTGATTGGGGAGATTTTTATGTTCTGTACCTTTT
TTACCTGCTGTCAAATgtcattttctttgtgttttgcACCCAAGTTATCT
AAATATCAACAGTCACTCAAAAATTCACCATTAAttcgtttattttttta
tacttCCTTATACTTGGTCTTTTTTCGTTTTAAATTAAACGCTGTCTGGA
AATAATTTACTATTTCAATTTCTGTACTTCAGGCGGAAAGGCtaaaattt
ctattaaaaaaaattacctattttaaagcaattttaaaattacccatcaa
atttttcaaattttaatatttttcaattcataTAGGTTGGTTTGTTGtat
ggaaaatgtttttagtTCGATTCCCATTGATACGCGAGCTGGTGTACGGT
AGCAGTGCGGAGAGTGAACATAAATTAAAATCCAAAAGGACGTCATCTGC
GTCCAGTCAGAATGGATTACAACCACGACGAAGCGCTCGGTTACGGCAGA
AGCAAGCATCAGTTGATACTGTCGATGAATAATAAATCAAATAATATTAA
TGGActtgtttatgaaattttgaactgATTTTTAAAACGGATGTTTTAAT
GTGCACAGACCAATGTCAATCGAATAATAAACCTGGTCTGGAAGTCGGGC
TGTATTGAATTTAGAGGATGGTAAGtaaaatgggctattccagaaaaaat
ttgtaccccctatgttgaggagatcttttttttttaaggtgacccccctg
gattttttttcaccttggatttttttctcccatttctttggaccaccctg
gattttcgacctcgttatactgaccaccctggattttcagcCCGATTTTA
CTGACTCCCCtggattttatcattcaaaaaactAGACcgccctggatttt
ttatttttcagaccacccaggacgtcacacctcctgaacatagggggtac
agactatttctggaatagccccaTCGGGGAAGTTGTTGCANTTTATTTTT
CAGACCACCcaggacgtcacacctcctgaacatagggggtacagactatt
tctggaatagccccaTCGGGGAAGTTGTTGCATTGGAATGGAAATGTTAT
TCACCCAATTAAACTAATTCAGATTTTCTATCGATATTGATCATCTTTGA
TCATGTGACCCAAGGAACTTTtaataaaacattttataaATCTCTTTTAT
TTAAAGTTTCTTGCGTGACCGATATAAAACAATTCAACCTTTTTGCTTAC
GTCTCCTAGCCACCAGTTAGATATTGAACTAATTCTACTggttttcgttt
ttttgggTACGAATCTCTGAAGGTTTTCTCATTCAGACAAGAGCATTGTA
AATACATGGTAACACGAcgtttgtttcaaattttatcgGGAGGTGTTATA
GTTTGAGTGTACCTCACAGATTTAGAAAGCCcgaacccgaagggctagac
gtcgtactttaagccatcgcaagcaaaaaaaagtgactATCGGAAAAAGT
Attattgctattgttttcggaaaacccgcgaagcttctgattggtcaaga
gctgaaattctattgtaatttcACATGACATAGGTAGGATTttctaccta
accacggcacactttcagtcgaagcacgacatctacccttcgggctttat
aaatctaagGTGTACCTACCATTTCAAGAGTAAATGTTACTTGCCTACTT
TGATAAAATTAATATTGTTTTAAAAGCCTTCGTTTTAATAGAGGTCCAAT
GCACTTATGGCAATTGTTACACATTTTTGGTTTCGATTTTGTTTGGGTGG
CACAACACCAGTCAAGGGAAGGAAGAAGTTTCGCATGATTTCAATTAATG
AGGATAATAAGAATTCTGATAATgaatctattttgaagattaaTTCTATA
CTTTAATTCTGTTGAATCGTCATATAATGGCTCTCTACATAATCAACATT
TTTTCGGACAGATAAAAACCACTTTttcattccaaaaaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003130-exon-sc0000025-1491911889:864428..864616 | TCONS_00003130-exon-sc0000025-1491911889:864428..864616 | Clytia hemisphaerica | exon |
| TCONS_00003130-exon-sc0000025-1510915933:864428..864616 | TCONS_00003130-exon-sc0000025-1510915933:864428..864616 | Clytia hemisphaerica | exon |
| TCONS_00003130-exon-sc0000025-1575043694:864428..864616 | TCONS_00003130-exon-sc0000025-1575043694:864428..864616 | Clytia hemisphaerica | exon |
| TCONS_00003130-exon-sc0000025-1491911889:865263..866920 | TCONS_00003130-exon-sc0000025-1491911889:865263..866920 | Clytia hemisphaerica | exon |
| TCONS_00003130-exon-sc0000025-1510915933:865263..866920 | TCONS_00003130-exon-sc0000025-1510915933:865263..866920 | Clytia hemisphaerica | exon |
| TCONS_00003130-exon-sc0000025-1575043694:865263..866920 | TCONS_00003130-exon-sc0000025-1575043694:865263..866920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:864428..866920 + |
Blast
The following BLAST results are available for this feature:
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