TCONS_00003131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003131
Unique NameTCONS_00003131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003131 ID=TCONS_00003131|Name=TCONS_00003131|organism=Clytia hemisphaerica|type=transcript|length=1266bp
ACCAggtcaaaaaaaatcacaaaataacaaaaaaattagaaaatatttaG
TTGAAAGCCATGGACAAAATAACGAAGATATTTGCAGATGTATTCAATGA
ACAAACTTGGCATAAAGTGAAAGATAACACATTAGCATTTTCTGGCTTGA
TATTTGGTGTTCTGGTGGTTTTCGTCCTCATTGCTATTGGTTGGTTTGTT
GtatggaaaatgtttttagtTCGATTCCCATTGATACGCGAGCTGGTGTA
CGGTAGCAGTGCGGAGAGTGAACATAAATTAAAATCCAAAAGGACGTCAT
CTGCGTCCAGTCAGAATGGATTACAACCACGACGAAGCGCTCGGTTACGG
CAGAAGCAAGCATCAGTTGATACTGTCGATGAATAATAAATCAAATAATA
TTAATGGActtgtttatgaaattttgaactgATTTTTAAAACGGATGTTT
TAATGTGCACAGACCAATGTCAATCGAATAATAAACCTGGTCTGGAAGTC
GGGCTGTATTGAATTTAGAGGATGGTCCAATGCACTTATGGCAATTGTTA
CACATTTTTGGTTTCGATTTTGTTTGGGTGGCACAACATCAGTCAAGGGA
AGGAAGAAGTTTCGCATGATTTCAATTAATGAGGATAATAAGAATTCTGA
AGatctattttgaagattatTTCTACACTTTAATTCTGTTGAATCGTCAT
ATATGGCTTTCTACATAATCAACATTTTTTTGGACAGATAAAAACCACTT
TttcattccaaaaaaaaactctATGATTCAGTATTTaaccctttttgaaa
aatatgtaatattgttatATTAATGGTAAtagaaaatccaaaaatttgta
caaaattaGATATATAGTTGTTATACATTTTTACGTATTTAATGCATTTC
TCATAGGAGATAAGAACCATTTGGGTCACACTTAACCAACCGAACTCTAA
AGTGACTAGAATGGCCAAATCGTACTNTTATACATTTTTACGTATTTAAT
GCATTTCTCATAGGAGATAAGAACCATTTGGGTCACACTTAACCAACCGA
ACTCTAAAGTGACTAGAATCGTActgatttcgaaaaatataagCCATTCT
AGTCTTCTTTTTAGAGTTCGATGGATAATATTTTCTATTAGggttttaaa
aaacaaatttaacaggttttaattttaatcgtgcaagtttttagttttaa
aaaaatgtcttaatTTATAGTGTAGCTTGGTtatgtactttttgttttag
ctCATAAGCATGTGTT
Run BLAST on NCBI

protein sequence of TCONS_00003131-protein

>TCONS_00003131-protein ID=TCONS_00003131-protein|Name=TCONS_00003131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MDKITKIFADVFNEQTWHKVKDNTLAFSGLIFGVLVVFVLIAIGWFVVWK
MFLVRFPLIRELVYGSSAESEHKLKSKRTSSASSQNGLQPRRSARLRQKQ
ASVDTVDE
Run BLAST on NCBI

transcript from alignment at sc0000025:864428..868291+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003131 ID=TCONS_00003131|Name=TCONS_00003131|organism=Clytia hemisphaerica|type=transcript|length=3864bp|location=Sequence derived from alignment at sc0000025:864428..868291+ (Clytia hemisphaerica)
ACCAggtcaaaaaaaatcacaaaataacaaaaaaattagaaaatatttaG
TTGAAAGCCATGGACAAAATAACGAAGATATTTGCAGATGTATTCAATGA
ACAAACTTGGCATAAAGTGAAAGATAACACATTAGCATTTTCTGGCTTGA
TATTTGGTGTTCTGGTGGTTTTCGTCCTCATTGCTATTGGTAAGATGCGT
TTACTAGATAAttaacacccctgtttcaatACTCCGGTCGTCgttcacat
gactaaaggttcaatctcaaaattagtaccttacaaaattcaaagtttta
ctgtggtggtcaTCTTAGATTGAGACTGCCCTTTTTCATGTAGAGGAATA
GTCAATGTTTTCATATGACAAAAGGCCACTCTCAAAACCAGAACAGAATT
GCAAGATTTCAATTTTCCAAGACTctgattttgagattgaactTTCAGTC
ATGTGAACGACGCGGTGTAACTTCCAACTTATTTGTGAAAAGGGGTTATT
ACCTAATTTACACCCTCTGATTGGGGAGATTTTTATGTTCTGTACCTTTT
TTACCTGCTGTCAAATgtcattttctttgtgttttgcACCCAAGTTATCT
AAATATCAACAGTCACTCAAAAATTCACCATTAAttcgtttattttttta
tacttCCTTATACTTGGTCTTTTTTCGTTTTAAATTAAACGCTGTCTGGA
AATAATTTACTATTTCAATTTCTGTACTTCAGGCGGAAAGGCtaaaattt
ctattaaaaaaaattacctattttaaagcaattttaaaattacccatcaa
atttttcaaattttaatatttttcaattcataTAGGTTGGTTTGTTGtat
ggaaaatgtttttagtTCGATTCCCATTGATACGCGAGCTGGTGTACGGT
AGCAGTGCGGAGAGTGAACATAAATTAAAATCCAAAAGGACGTCATCTGC
GTCCAGTCAGAATGGATTACAACCACGACGAAGCGCTCGGTTACGGCAGA
AGCAAGCATCAGTTGATACTGTCGATGAATAATAAATCAAATAATATTAA
TGGActtgtttatgaaattttgaactgATTTTTAAAACGGATGTTTTAAT
GTGCACAGACCAATGTCAATCGAATAATAAACCTGGTCTGGAAGTCGGGC
TGTATTGAATTTAGAGGATGGTAAGtaaaatgggctattccagaaaaaat
ttgtaccccctatgttgaggagatcttttttttttaaggtgacccccctg
gattttttttcaccttggatttttttctcccatttctttggaccaccctg
gattttcgacctcgttatactgaccaccctggattttcagcCCGATTTTA
CTGACTCCCCtggattttatcattcaaaaaactAGACcgccctggatttt
ttatttttcagaccacccaggacgtcacacctcctgaacatagggggtac
agactatttctggaatagccccaTCGGGGAAGTTGTTGCANTTTATTTTT
CAGACCACCcaggacgtcacacctcctgaacatagggggtacagactatt
tctggaatagccccaTCGGGGAAGTTGTTGCATTGGAATGGAAATGTTAT
TCACCCAATTAAACTAATTCAGATTTTCTATCGATATTGATCATCTTTGA
TCATGTGACCCAAGGAACTTTtaataaaacattttataaATCTCTTTTAT
TTAAAGTTTCTTGCGTGACCGATATAAAACAATTCAACCTTTTTGCTTAC
GTCTCCTAGCCACCAGTTAGATATTGAACTAATTCTACTggttttcgttt
ttttgggTACGAATCTCTGAAGGTTTTCTCATTCAGACAAGAGCATTGTA
AATACATGGTAACACGAcgtttgtttcaaattttatcgGGAGGTGTTATA
GTTTGAGTGTACCTCACAGATTTAGAAAGCCcgaacccgaagggctagac
gtcgtactttaagccatcgcaagcaaaaaaaagtgactATCGGAAAAAGT
Attattgctattgttttcggaaaacccgcgaagcttctgattggtcaaga
gctgaaattctattgtaatttcACATGACATAGGTAGGATTttctaccta
accacggcacactttcagtcgaagcacgacatctacccttcgggctttat
aaatctaagGTGTACCTACCATTTCAAGAGTAAATGTTACTTGCCTACTT
TGATAAAATTAATATTGTTTTAAAAGCCTTCGTTTTAATAGAGGTCCAAT
GCACTTATGGCAATTGTTACACATTTTTGGTTTCGATTTTGTTTGGGTGG
CACAACACCAGTCAAGGGAAGGAAGAAGTTTCGCATGATTTCAATTAATG
AGGATAATAAGAATTCTGATAATgaatctattttgaagattaaTTCTATA
CTTTAATTCTGTTGAATCGTCATATAATGGCTCTCTACATAATCAACATT
TTTTCGGACAGATAAAAACCACTTTttcattccaaaaaaaaactctATGA
TTCATTATTGGTAAATAATTCTTCAGTCTTTTACAGTGCTTGATACATAA
GTAGAGCGATGTCagtcaggaagaaaagacaATTTTTTATGTTGCTACTC
TGAAGATTGTCAcaaaagtggcatgaaactgccagtagcaaaataaaaaa
ttgtctttttttttgaccGNTTTTTTGGGTACGAATCTCTGAAGGTTTTC
TCATTCAGACAAGAGCATTGTAAATACATGGTAACACGAcgtttgtttca
aattttatcgGGGGGTGTTATAGTTTAAGTGTACCTCACAGATTTAGAAA
GCCcgaacccgaagggctagatgtcgtgctttaagccatcgcaggcaaaa
aaaagtgactATCGGAAAAAGTATTGTTGCAATTGTTTTcggaaaacccg
cgaagcttctgattggtcaagtgctgaaattctattgtaatttcACGTGA
CATAGACATAGGTAGAATTttctacctaaccacggcacactttcagtcga
agcacgacatctagcccttcgggctttataaatctaagGTGTACCTACCA
TTTCAAGAGTAAAGGTTACTTGCCTACTCTGATAAAATTAATATTGTTTT
AAAAGCCTTCGTTTTAATGGAGGTCCAATGCACTTATGGCAATTGTTACA
CATTTTTGGTTTCGATTTTGTTTGGGTGGCACAACATCAGTCAAGGGAAG
GAAGAAGTTTCGCATGATTTCAATTAATGAGGATAATAAGAATTCTGAAG
atctattttgaagattatTTCTACACTTTAATTCTGTTGAATCGTCATAT
ATGGCTTTCTACATAATCAACATTTTTTTGGACAGATAAAAACCACTTTt
tcattccaaaaaaaaactctATGATTCAGTATTTaaccctttttgaaaaa
tatgtaatattgttatATTAATGGTAAtagaaaatccaaaaatttgtaca
aaattaGATATATAGTTGTTATACATTTTTACGTATTTAATGCATTTCTC
ATAGGAGATAAGAACCATTTGGGTCACACTTAACCAACCGAACTCTAAAG
TGACTAGAATGGCCAAATCGTACTNTTATACATTTTTACGTATTTAATGC
ATTTCTCATAGGAGATAAGAACCATTTGGGTCACACTTAACCAACCGAAC
TCTAAAGTGACTAGAATCGTActgatttcgaaaaatataagCCATTCTAG
TCTTCTTTTTAGAGTTCGATGGATAATATTTTCTATTAGggttttaaaaa
acaaatttaacaggttttaattttaatcgtgcaagtttttagttttaaaa
aaatgtcttaatTTATAGTGTAGCTTGGTtatgtactttttgttttagct
CATAAGCATGTGTT

Coding sequence (CDS) from alignment at sc0000025:864428..868291+

>TCONS_00003131 ID=TCONS_00003131|Name=TCONS_00003131|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0000025:864428..868291+ (Clytia hemisphaerica)
ATGGACAAAATAACGAAGATATTTGCAGATGTATTCAATGAACAAACTTG
GCATAAAGTGAAAGATAACACATTAGCATTTTCTGGCTTGATATTTGGTG
TTCTGGTGGTTTTCGTCCTCATTGCTATTGGTTGGTTTGTTGtatggaaa
atgtttttagtTCGATTCCCATTGATACGCGAGCTGGTGTACGGTAGCAG
TGCGGAGAGTGAACATAAATTAAAATCCAAAAGGACGTCATCTGCGTCCA
GTCAGAATGGATTACAACCACGACGAAGCGCTCGGTTACGGCAGAAGCAA
GCATCAGTTGATACTGTCGATGAATAAATGGACAAAATAACGAAGATATT
TGCAGATGTATTCAATGAACAAACTTGGCATAAAGTGAAAGATAACACAT
TAGCATTTTCTGGCTTGATATTTGGTGTTCTGGTGGTTTTCGTCCTCATT
GCTATTGGTTGGTTTGTTGtatggaaaatgtttttagtTCGATTCCCATT
GATACGCGAGCTGGTGTACGGTAGCAGTGCGGAGAGTGAACATAAATTAA
AATCCAAAAGGACGTCATCTGCGTCCAGTCAGAATGGATTACAACCACGA
CGAAGCGCTCGGTTACGGCAGAAGCAAGCATCAGTTGATACTGTCGATGA
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001737XLOC_001737Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003131-proteinTCONS_00003131-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003131-exon-sc0000025-1491911889:864428..864616TCONS_00003131-exon-sc0000025-1491911889:864428..864616Clytia hemisphaericaexon
TCONS_00003131-exon-sc0000025-1510915933:864428..864616TCONS_00003131-exon-sc0000025-1510915933:864428..864616Clytia hemisphaericaexon
TCONS_00003131-exon-sc0000025-1575043694:864428..864616TCONS_00003131-exon-sc0000025-1575043694:864428..864616Clytia hemisphaericaexon
TCONS_00003131-exon-sc0000025-1491911889:865263..865597TCONS_00003131-exon-sc0000025-1491911889:865263..865597Clytia hemisphaericaexon
TCONS_00003131-exon-sc0000025-1510915933:865263..865597TCONS_00003131-exon-sc0000025-1510915933:865263..865597Clytia hemisphaericaexon
TCONS_00003131-exon-sc0000025-1575043694:865263..865597TCONS_00003131-exon-sc0000025-1575043694:865263..865597Clytia hemisphaericaexon
TCONS_00003131-exon-sc0000025-1491911889:867550..868291TCONS_00003131-exon-sc0000025-1491911889:867550..868291Clytia hemisphaericaexon
TCONS_00003131-exon-sc0000025-1510915933:867550..868291TCONS_00003131-exon-sc0000025-1510915933:867550..868291Clytia hemisphaericaexon
TCONS_00003131-exon-sc0000025-1575043694:867550..868291TCONS_00003131-exon-sc0000025-1575043694:867550..868291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:864428..868291 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.446118	1.93594	4.64919	2.90347e-06	1.44209e-06	1.10538e-09	0.00294784	0	8.46518	0.255754	1.2037	14.0327	7.34972	1.85801	6.23819	2.54653	6.03099	0.100893	0.00142816	8.69309	0.330296	0.344678	9.07406	5.0129	1.53413	7.26447e-07	3.45253	1.99928	4.00515	0.582167
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR031851DUF4750
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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