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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003142 ID=TCONS_00003142|Name=TCONS_00003142|organism=Clytia hemisphaerica|type=transcript|length=7163bpRun BLAST on NCBI protein sequence of TCONS_00003142-protein >TCONS_00003142-protein ID=TCONS_00003142-protein|Name=TCONS_00003142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=503bp MTLKKQKSFSTLDQQTSQERRKVGKTLSSPNLKLNTKELADESPSKHQQQRun BLAST on NCBI transcript from alignment at sc0000025:58685..79748- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003142 ID=TCONS_00003142|Name=TCONS_00003142|organism=Clytia hemisphaerica|type=transcript|length=21064bp|location=Sequence derived from alignment at sc0000025:58685..79748- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000025:58685..79748- >TCONS_00003142 ID=TCONS_00003142|Name=TCONS_00003142|organism=Clytia hemisphaerica|type=CDS|length=24192bp|location=Sequence derived from alignment at sc0000025:58685..79748- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003142 vs. Swiss-Prot (Human)
Match: DGAT1 (Diacylglycerol O-acyltransferase 1 OS=Homo sapiens GN=DGAT1 PE=1 SV=2) HSP 1 Score: 369.392 bits (947), Expect = 6.101e-112 Identity = 218/412 (52.91%), Postives = 287/412 (69.66%), Query Frame = 2
Query: 5099 KVHTDQPSFLSSSSGFDNYRGXXXXXXXXXXXSNFRLAVDNILKYGILVDP-KFVLVAMEDPYNWPCTTLFLCSNVFIQICFSIEKALSEEKLSERFGLILNIFNLAMMXXXXXXXXXXXXXXXWFATM-TLCFYTGLFLKFVSYVSVNKWCREEKSGKRPKDPELKPTG---PVLYPKNLNQQDLYYFVCAPTFCYELNFPXXXXXXXXXXXXXXAEGVFLSGLIVALAQQWVVPTVKNSMKSFQEMDFPRFFERMMKLAVPNHVIWLIFFYTYFHSILNILAEVLHFGDRVFYKDWWNSPNITYFWQNWNIPIHRWAKRHVYEPMLRNNYSKIQASLSVFFISAFFHEYVVSVPLRMLKPYAFLAMLMQVPLA-IMTSFMKNPWGNFVVWLSLIIGQPLAIMMYYHDYLV 6316
+ H Q S SS SGF NYRGI+N C+++LILSN RL ++N++KYGILVDP + V + ++DPY+WP L + +NVF F +EK L+ L+E+ GL+L++ NLA ++ P VVL+ + ++ L +T LFLK SY VN WCR ++ + V YP NL +DLYYF+ APT CYELNFPR+ +IRKRFL+RRI E +F + L V L QQW+VPT++NSMK F++MD+ R ER++KLAVPNH+IWLIFFY FHS LN +AE++ FGDR FY+DWWNS ++TYFWQNWNIP+H+W RH Y+PMLR SK A VF SAFFHEY+VSVPLRM + +AF M+ Q+PLA + F + +GN VWLSLIIGQP+A++MY HDY V
Sbjct: 67 RCHRLQDSLFSSDSGFSNYRGILNWCVVMLILSNARLFLENLIKYGILVDPIQVVSLFLKDPYSWPAPCLVIAANVFAVAAFQVEKRLAVGALTEQAGLLLHVANLATILCFPAAVVLLVESITPVGSLLALMAHTILFLKLFSYRDVNSWCRRARAKAASAGKKASSAAAPHTVSYPDNLTYRDLYYFLFAPTLCYELNFPRSPRIRKRFLLRRILEMLFFTQLQVGLIQQWMVPTIQNSMKPFKDMDYSRIIERLLKLAVPNHLIWLIFFYWLFHSCLNAVAELMQFGDREFYRDWWNSESVTYFWQNWNIPVHKWCIRHFYKPMLRRGSSKWMARTGVFLASAFFHEYLVSVPLRMFRLWAFTGMMAQIPLAWFVGRFFQGNYGNAAVWLSLIIGQPIAVLMYVHDYYV 478 The following BLAST results are available for this feature:
BLAST of TCONS_00003142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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