TCONS_00003167 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003167
Unique NameTCONS_00003167
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003167 ID=TCONS_00003167|Name=TCONS_00003167|organism=Clytia hemisphaerica|type=transcript|length=480bp
ATAGAGCACTATATGAAGCCCACAACCACAACAACAGCTACAACGACGAC
GAATCATACGACACAGCAACAACAGACAGCAACACAGACGACAAAAGAAC
CGATCACAACAACGACCTGGCAATCGAGATATGCGATTATCACTGGATTT
GCATTGTGTGTGATTCTCTTTGGATTCAGTATCATgtatttctactttaa
aaaaagGAAAAGCCGACGAAGAGTGCATCCATCAATGCTGTGCCGGACGA
TCATTGTTCTTCCCATGATATCTGACGAATATTTGGAAAAAGATAACAAA
ACTATATTGAAACAAATCAAGATCTGAAGAGAAGAAGATGTAAAACTGGA
TTGTTCATTCCGACTTCTCCGCTGACTTTTGACATACGAAGACATTTTAA
AGCAATGGTGTATATTATAATTGTATGTAAATAAATATACTTATTCTCAA
AGACAAAGATAACAAAAGCTGGTGTTACAG
Run BLAST on NCBI

protein sequence of TCONS_00003167-protein

>TCONS_00003167-protein ID=TCONS_00003167-protein|Name=TCONS_00003167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
IEHYMKPTTTTTATTTTNHTTQQQQTATQTTKEPITTTTWQSRYAIITGF
ALCVILFGFSIMYFYFKKRKSRRRVHPSMLCRTIIVLPMISDEYLEKDNK
TILKQIKI
Run BLAST on NCBI

transcript from alignment at sc0000025:458397..459800-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003167 ID=TCONS_00003167|Name=TCONS_00003167|organism=Clytia hemisphaerica|type=transcript|length=1404bp|location=Sequence derived from alignment at sc0000025:458397..459800- (Clytia hemisphaerica)
ATAGAGCACTATATGAAGCCCACAACCACAACAACAGCTACAACGACGAC
GAATCATACGACACAGCAACAACAGACAGCAACACAGACGACAAAAGAAC
CGATCACAACAACGACCTGGCAATCGAGATATGCGATTATCACTGGATTT
GCATTGTGTGTGATTCTCTTTGGATTCAGTATCATGTATTTCTACTTTAA
AAAAAGGTAACCAGTGTGTCCGCGGAAGATTGTTCTCCAAGAAAATAATT
TTCCAATTTTTTTTCAAAATGGCTATAAAAGCAGATAGAAACAGAATAAT
TCAAACATGTAAAAATTATTAAGAAACATGACCTTCTATGTTTGGAGGTG
AAAATCAGCATAGCTAAGTGGAAAGCCCTCATTCGTTTAATACATCCAAA
TCCTTATGTCAATTCATCGGATTTGGCAGAATGAGGGTTTCCTATGTTTA
ACAACAGTCTGATTTTTAGCAGACGTAAATTGGTCATATTATTTAAGTAC
TTTAGGGGCTTTCTTACTAAAGGAATTTCAATCGGTGTCAATTGGATGAT
ATACCGGAGTGTGCAATTCAGATTCCTAAAATTGACCCTTAGAAAGCACT
GAGAGAATAAAAAAATTTGATTGAGTTAAAACTATTCGGTGTGGCTTATC
ACTCTTTAATCGACACCACTATTGAATTATGAATAACCCACATCGAGTAG
TGCTACCATTTAATTACCAATTTTTCGATAAACTCCATAATTTGAATGAA
AGAGAGGGAAAAAGGAGTTAGGCGCACTTAAACGCGATAAAAAATCCCCC
TCTCTCTTCAATTTGTAAAAGAACTGAATAATGTTTCTTTGATCATCGCG
TCGAAATATCAAAACGTTTTGATATTCGCGTTTAAGTGCACCTAGCAAAA
TCAAGGCGTTTATGTGCGTATATGTGCGTCTAAGTGCGCTTAAGTGCGTT
TAGCGAATGTACTCACTAGAAAGCAAAATTGTGTTCGGCGCACTTAAACG
CGATTTTTAGCACAAGTGAGTACCAAGCTTNATGTGTTTGGCGTACTTAA
ACGCACTTAAACGCGATTTTTAGCACAAGTACCAAGCTTTAAGTTCATTG
AGAGACAAACTGTGTTTTTTTCTATTAAAGGAAAAGCCGACGAAGAGTGC
ATCCATCAATGCTGTGCCGGACGATCATTGTTCTTCCCATGATATCTGAC
GAATATTTGGAAAAAGATAACAAAACTATATTGAAACAAATCAAGATCTG
AAGAGAAGAAGATGTAAAACTGGATTGTTCATTCCGACTTCTCCGCTGAC
TTTTGACATACGAAGACATTTTAAAGCAATGGTGTATATTATAATTGTAT
GTAAATAAATATACTTATTCTCAAAGACAAAGATAACAAAAGCTGGTGTT
ACAG

Coding sequence (CDS) from alignment at sc0000025:458397..459800-

>TCONS_00003167 ID=TCONS_00003167|Name=TCONS_00003167|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0000025:458397..459800- (Clytia hemisphaerica)
GAAAAGCCGACGAAGAGTGCATCCATCAATGCTGTGCCGGACGATCATTG
TTCTTCCCATGATATCTGACGAATATTTGGAAAAAGATAACAAAACTATA
TTGAAACAAATCAAGATCTGAATAGAGCACTATATGAAGCCCACAACCAC
AACAACAGCTACAACGACGACGAATCATACGACACAGCAACAACAGACAG
CAACACAGACGACAAAAGAACCGATCACAACAACGACCTGGCAATCGAGA
TATGCGATTATCACTGGATTTGCATTGTGTGTGATTCTCTTTGGATTCAG
TATCATGTATTTCTACTTTAAAAAAAGGAAAAGCCGACGAAGAGTGCATC
CATCAATGCTGTGCCGGACGATCATTGTTCTTCCCATGATATCTGACGAA
TATTTGGAAAAAGATAACAAAACTATATTGAAACAAATCAAGATCTGAAT
AGAGCACTATATGAAGCCCACAACCACAACAACAGCTACAACGACGACGA
ATCATACGACACAGCAACAACAGACAGCAACACAGACGACAAAAGAACCG
ATCACAACAACGACCTGGCAATCGAGATATGCGATTATCACTGGATTTGC
ATTGTGTGTGATTCTCTTTGGATTCAGTATCATGTATTTCTACTTTAAAA
AAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001753XLOC_001753Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003167-proteinTCONS_00003167-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003167-exon-sc0000025-1575043694:459595..459800TCONS_00003167-exon-sc0000025-1575043694:459595..459800Clytia hemisphaericaexon
TCONS_00003167-exon-sc0000025-1575043694:458397..458670TCONS_00003167-exon-sc0000025-1575043694:458397..458670Clytia hemisphaericaexon
TCONS_00003167-exon-sc0000025-1510915933:459595..459800TCONS_00003167-exon-sc0000025-1510915933:459595..459800Clytia hemisphaericaexon
TCONS_00003167-exon-sc0000025-1510915933:458397..458670TCONS_00003167-exon-sc0000025-1510915933:458397..458670Clytia hemisphaericaexon
TCONS_00003167-exon-sc0000025-1491911889:459595..459800TCONS_00003167-exon-sc0000025-1491911889:459595..459800Clytia hemisphaericaexon
TCONS_00003167-exon-sc0000025-1491911889:458397..458670TCONS_00003167-exon-sc0000025-1491911889:458397..458670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:458397..459800 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.35309	0	0	0.315141	0.661913	0	0	0.435941	2.96027	1.89882	0.148675	0.0797754	4.2259	5.43945	39.8011	15.8732	0.506301	0.740868	0.150104	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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