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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003205 ID=TCONS_00003205|Name=TCONS_00003205|organism=Clytia hemisphaerica|type=transcript|length=1819bpRun BLAST on NCBI transcript from alignment at sc0000025:834867..855531- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003205 ID=TCONS_00003205|Name=TCONS_00003205|organism=Clytia hemisphaerica|type=transcript|length=20665bp|location=Sequence derived from alignment at sc0000025:834867..855531- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003205 vs. Swiss-Prot (Human)
Match: LRC69 (Leucine-rich repeat-containing protein 69 OS=Homo sapiens GN=LRRC69 PE=2 SV=2) HSP 1 Score: 172.94 bits (437), Expect = 1.716e-52 Identity = 97/226 (42.92%), Postives = 136/226 (60.18%), Query Frame = 3
Query: 648 PCTINRLSYLQLLSINGNQLLQIPEEICHLSQLKELNINDNFIQSLPRKIAFLRKLKILRARRNRLTEIPEEICQCGSLEILDVACNAIQSFPVQIFNLKLDELHCEQNQMLRNEPVHSIQEEEVLSLKEIVARFILKATKQCSTSKLGKQLKMFPEIQQMFSEGSECAICHTPFLNVWLECVRFVDTKKLMKTKNNAGVLPIRGLLCSYKCFNSVGHDFFGIAQA 1325
P ++RL L +SIN NQL IP E+C L L EL +N N + +P +I FL+KL+ L RN + +PEE+C L ILD+A N IQ FP +LKL E +CE N + +PV S Q+E V SL+EI +RF++ + + L ++ +P+++ M S+G CAIC F+ VWLECVRFV K K N ++P++ L+CSYKCF + FGIAQ
Sbjct: 123 PQEVSRLKSLTYMSINYNQLASIPRELCFLENLVELQLNYNQLICIPEEIKFLKKLQKLLLARNNIGVLPEELCDLKKLRILDIAGNIIQIFPSGFQDLKLREFYCEGNPLFLQQPVISTQQENVWSLQEITSRFVMNQLAE-NNPFLMDDIERYPQVRSMISQGKTCAICGQYFITVWLECVRFVPPPKDWKISKNLKLVPLQVLICSYKCFTQRDPNLFGIAQV 347 HSP 2 Score: 53.1434 bits (126), Expect = 1.716e-52 Identity = 28/99 (28.28%), Postives = 56/99 (56.57%), Query Frame = 2
Query: 287 RMLVAALK--RKPQNLNFSNKNLSYLPESIGKITSVRCLDLKNNHLTELPDDLSSLAELKLINLGNNKFKEIPHVLREFKCLETLHLFNNELHELCPST 577
R+L+ AL + + + + K ++ +P ++GK+ ++ L L+NN + ++ +L +L +L +NLGNN +E+P ++ L+ LHL N + P
Sbjct: 4 RLLIKALSGGKNTKIITLNGKKMTKMPSALGKLPGLKTLVLQNNLIPKVCPELCNLTQLTTLNLGNNLLEEVPEEMKYLTSLKNLHLSGNRICRFAPGA 102 The following BLAST results are available for this feature:
BLAST of TCONS_00003205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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