TCONS_00003223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003223
Unique NameTCONS_00003223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003223 ID=TCONS_00003223|Name=TCONS_00003223|organism=Clytia hemisphaerica|type=transcript|length=546bp
TTTTAACTAAAGTAAATTCCTTCAACCTCGTgtttatctaaaaatatttc
ctttacttCGATAGTTTCTTTATATATACAGTTTAAAATACAAAGTGCAC
CACAACATTCTTTTTatgaataagaatttttttcatggacccacgaattt
ttttccgacccacgaaggcacgcaacCCATGCAATTTATCACACTCCTAT
TTtacccatccccactgaattttctgatttgaaaacaaaagaattttgaa
acaaatatcAATCAATCCCATCGAGTTTCACTGAAAAATTCCacagggtc
tgtgagaagggggcgtTCTCTtggttttgaaatgaaaaaacactttttaa
taGAATTAGTTTTATAGGATAAAAACGTTTCATTGTGAGGGATATAAATA
GAATTTTAGACATTGTTTTAAAATATATAATCAGATCAGAAAAAATGGTA
TCTTGTGACTTGATCTTTTATGTTTTGTCATCCGTGGTATTTTggttttt
acatttgaaaaccACACACTAAGAGCACTGATGTGTGACGAATTTG
Run BLAST on NCBI

transcript from alignment at sc0000025:294885..295430

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003223 ID=TCONS_00003223|Name=TCONS_00003223|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at sc0000025:294885..295430 (Clytia hemisphaerica)
CAAATTCGTCACACATCAGTGCTCTTAGTGTGTggttttcaaatgtaaaa
accAAAATACCACGGATGACAAAACATAAAAGATCAAGTCACAAGATACC
ATTTTTTCTGATCTGATTATATATTTTAAAACAATGTCTAAAATTCTATT
TATATCCCTCACAATGAAACGTTTTTATCCTATAAAACTAATTCtattaa
aaagtgttttttcatttcaaaaccaAGAGAacgcccccttctcacagacc
ctgtGGAATTTTTCAGTGAAACTCGATGGGATTGATTgatatttgtttca
aaattcttttgttttcaaatcagaaaattcagtggggatgggtaAAATAG
GAGTGTGATAAATTGCATGGgttgcgtgccttcgtgggtcggaaaaaaat
tcgtgggtccatgaaaaaaattcttattcatAAAAAGAATGTTGTGGTGC
ACTTTGTATTTTAAACTGTATATATAAAGAAACTATCGaagtaaaggaaa
tatttttagataaacACGAGGTTGAAGGAATTTACTTTAGTTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001783XLOC_001783Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003223-exon-sc0000025-1491911889:294885..295430TCONS_00003223-exon-sc0000025-1491911889:294885..295430Clytia hemisphaericaexon
TCONS_00003223-exon-sc0000025-1510915933:294885..295430TCONS_00003223-exon-sc0000025-1510915933:294885..295430Clytia hemisphaericaexon
TCONS_00003223-exon-sc0000025-1575043694:294885..295430TCONS_00003223-exon-sc0000025-1575043694:294885..295430Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:294885..295430 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.21055	0.20532	0.357594	0.233233	0.425908	0.448745	0.676739	0.506844	0.26614	0.109886	0.106658	0.490789	0.350076	0.145423	0.298894	0.256607	0.474178	0.729026	0.447639	0.234211	21.3428	20.6192	38.765	48.5691	89.2666	57.4969	8.12599	1.278	0	0.238098
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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