TCONS_00003224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003224
Unique NameTCONS_00003224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003224 ID=TCONS_00003224|Name=TCONS_00003224|organism=Clytia hemisphaerica|type=transcript|length=447bp
TCAATGAGATCAACTCTACGTCACCTCTTCATCAAAGTGCCGAATAACTC
CATCGACAAAACGCTTTTCGAATCCTACGACTCAGCAATCTCTAGCATCC
AAATGTACATCACTGATGCAAAGCAAACCAAACGTGATCAACGAGAATTC
GTCGAGAATTCATCTAAAGAGGCAAAattgaaatcgatcgagttttccat
caaaaatgttGACCACTCCCTAAAATTAATCGAATCCCAACTTTCCATCG
ATTTCAATGAAGTAACAGACACTGTCGTCCAATCTGCAAGCAAAGATATT
CCTGATATCACGAAGTCAATGGAGAAGATAGCAATCGAACTCAAGGTCCT
TATCAGAGACACAACTGGGACAACTAAGGAGCCATCAGTCACAATGCTAC
AGCAGAAGTATTCACGTTTGATTACTTCTCTTCAAACCTTCTCAACC
Run BLAST on NCBI

protein sequence of TCONS_00003224-protein

>TCONS_00003224-protein ID=TCONS_00003224-protein|Name=TCONS_00003224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
SMRSTLRHLFIKVPNNSIDKTLFESYDSAISSIQMYITDAKQTKRDQREF
VENSSKEAKLKSIEFSIKNVDHSLKLIESQLSIDFNEVTDTVVQSASKDI
PDITKSMEKIAIELKVLIRDTTGTTKEPSVTMLQQKYSRLITSLQTFST
Run BLAST on NCBI

transcript from alignment at sc0000025:381103..381549

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003224 ID=TCONS_00003224|Name=TCONS_00003224|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at sc0000025:381103..381549 (Clytia hemisphaerica)
GGTTGAGAAGGTTTGAAGAGAAGTAATCAAACGTGAATACTTCTGCTGTA
GCATTGTGACTGATGGCTCCTTAGTTGTCCCAGTTGTGTCTCTGATAAGG
ACCTTGAGTTCGATTGCTATCTTCTCCATTGACTTCGTGATATCAGGAAT
ATCTTTGCTTGCAGATTGGACGACAGTGTCTGTTACTTCATTGAAATCGA
TGGAAAGTTGGGATTCGATTAATTTTAGGGAGTGGTCaacatttttgatg
gaaaactcgatcgatttcaatTTTGCCTCTTTAGATGAATTCTCGACGAA
TTCTCGTTGATCACGTTTGGTTTGCTTTGCATCAGTGATGTACATTTGGA
TGCTAGAGATTGCTGAGTCGTAGGATTCGAAAAGCGTTTTGTCGATGGAG
TTATTCGGCACTTTGATGAAGAGGTGACGTAGAGTTGATCTCATTGA

Coding sequence (CDS) from alignment at sc0000025:381103..381549

>TCONS_00003224 ID=TCONS_00003224|Name=TCONS_00003224|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0000025:381103..381549 (Clytia hemisphaerica)
GGTTGAGAAGGTTTGAAGAGAAGTAATCAAACGTGAATACTTCTGCTGTA
GCATTGTGACTGATGGCTCCTTAGTTGTCCCAGTTGTGTCTCTGATAAGG
ACCTTGAGTTCGATTGCTATCTTCTCCATTGACTTCGTGATATCAGGAAT
ATCTTTGCTTGCAGATTGGACGACAGTGTCTGTTACTTCATTGAAATCGA
TGGAAAGTTGGGATTCGATTAATTTTAGGGAGTGGTCaacatttttgatg
gaaaactcgatcgatttcaatTTTGCCTCTTTAGATGAATTCTCGACGAA
TTCTCGTTGATCACGTTTGGTTTGCTTTGCATCAGTGATGTACATTTGGA
TGCTAGAGATTGCTGAGTCGTAGGATTCGAAAAGCGTTTTGTCGATGGAG
TTATTCGGCACTTTGATGAAGAGGTGACGTAGAGTTGATCTCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001784XLOC_001784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003224-exon-sc0000025-1491911889:381103..381549TCONS_00003224-exon-sc0000025-1491911889:381103..381549Clytia hemisphaericaexon
TCONS_00003224-exon-sc0000025-1510915933:381103..381549TCONS_00003224-exon-sc0000025-1510915933:381103..381549Clytia hemisphaericaexon
TCONS_00003224-exon-sc0000025-1575043694:381103..381549TCONS_00003224-exon-sc0000025-1575043694:381103..381549Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003224-proteinTCONS_00003224-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:381103..381549 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.679463	1.45363	2.19414	0.660501	5.69649	4.90292	5.35124	5.90904	2.18995	3.97241	2.61981	3.51963	3.12101	1.95618	0	0.181673	0.111903	0.458789	1.26768	4.59856	0	0.421797	0.512749	0.621551	4.64133	5.84275	0	0.21814	0.496355	0.505708
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top