TCONS_00003227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003227
Unique NameTCONS_00003227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003227 ID=TCONS_00003227|Name=TCONS_00003227|organism=Clytia hemisphaerica|type=transcript|length=389bp
CGGATTGTCATCCATTGATATTGAAGATGGTGCTTTCAACGTGAATTATT
TGAACTTAGAGAGGAACAATATAACATCAGTACGAAAAGAATGGTTTGTA
TCTATTCCCGGCTGGATAGACTTAAGGTACAACCCGTTGACATGTGATTG
TGTTCTCTATGATACATTAAACCGTTTTCAAAAAGAAGGTCTAGATGTTC
AGAATATAAAAGGTTCTTGCGATATCGATGGTGTTTCTTTGAAAGTATTT
CACACTGAAAATAAACTAAATTGTTCTTCTTGCTCTGTGAACAAGtgtca
aaacaatgaaaaatgtCAAGTTATCGATCAGTTCAGTTACAATTGTTCTT
GCGAAGAAAAGTACCATGGGGAATTCTGCCAATTTGAGA
Run BLAST on NCBI

protein sequence of TCONS_00003227-protein

>TCONS_00003227-protein ID=TCONS_00003227-protein|Name=TCONS_00003227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
GLSSIDIEDGAFNVNYLNLERNNITSVRKEWFVSIPGWIDLRYNPLTCDC
VLYDTLNRFQKEGLDVQNIKGSCDIDGVSLKVFHTENKLNCSSCSVNKCQ
NNEKCQVIDQFSYNCSCEEKYHGEFCQFE
Run BLAST on NCBI

transcript from alignment at sc0000025:389286..389674

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003227 ID=TCONS_00003227|Name=TCONS_00003227|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at sc0000025:389286..389674 (Clytia hemisphaerica)
TCTCAAATTGGCAGAATTCCCCATGGTACTTTTCTTCGCAAGAACAATTG
TAACTGAACTGATCGATAACTTGacatttttcattgttttgacaCTTGTT
CACAGAGCAAGAAGAACAATTTAGTTTATTTTCAGTGTGAAATACTTTCA
AAGAAACACCATCGATATCGCAAGAACCTTTTATATTCTGAACATCTAGA
CCTTCTTTTTGAAAACGGTTTAATGTATCATAGAGAACACAATCACATGT
CAACGGGTTGTACCTTAAGTCTATCCAGCCGGGAATAGATACAAACCATT
CTTTTCGTACTGATGTTATATTGTTCCTCTCTAAGTTCAAATAATTCACG
TTGAAAGCACCATCTTCAATATCAATGGATGACAATCCG

Coding sequence (CDS) from alignment at sc0000025:389286..389674

>TCONS_00003227 ID=TCONS_00003227|Name=TCONS_00003227|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000025:389286..389674 (Clytia hemisphaerica)
CTCAAATTGGCAGAATTCCCCATGGTACTTTTCTTCGCAAGAACAATTGT
AACTGAACTGATCGATAACTTGacatttttcattgttttgacaCTTGTTC
ACAGAGCAAGAAGAACAATTTAGTTTATTTTCAGTGTGAAATACTTTCAA
AGAAACACCATCGATATCGCAAGAACCTTTTATATTCTGAACATCTAGAC
CTTCTTTTTGAAAACGGTTTAATGTATCATAGAGAACACAATCACATGTC
AACGGGTTGTACCTTAAGTCTATCCAGCCGGGAATAGATACAAACCATTC
TTTTCGTACTGATGTTATATTGTTCCTCTCTAAGTTCAAATAATTCACGT
TGAAAGCACCATCTTCAATATCAATGGATGACAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001787XLOC_001787Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003227-proteinTCONS_00003227-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003227-exon-sc0000025-1491911889:389286..389674TCONS_00003227-exon-sc0000025-1491911889:389286..389674Clytia hemisphaericaexon
TCONS_00003227-exon-sc0000025-1510915933:389286..389674TCONS_00003227-exon-sc0000025-1510915933:389286..389674Clytia hemisphaericaexon
TCONS_00003227-exon-sc0000025-1575043694:389286..389674TCONS_00003227-exon-sc0000025-1575043694:389286..389674Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:389286..389674 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.384404	0	0.436664	1.142	0.420075	0.697595	0.871858	0	0.201985	0	0	9.06015	4.97687	0.398227	0.530291	0	0	18.3049	18.2086	0	0	0.677968	0	0	0.377724	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR013032EGF-like_CS
IPR000742EGF-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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