TCONS_00003238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003238
Unique NameTCONS_00003238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003238 ID=TCONS_00003238|Name=TCONS_00003238|organism=Clytia hemisphaerica|type=transcript|length=506bp
GGACCATAAATAACAGAATCACTTGGTTCATCAATCACCTGGTCTTCGCT
ACAAGTTTTGTTTCGTAGATAGGATTGCATTGTTGCCATTGTCCCAGTTT
CTGAACCTTTATCAATTCGCATAAAATTAGGCATACAATTAGATTTGGAT
AGGTAGTCCCAATGCCACTTTCCAATCAGCTGTGGGTTGCTGTTTGTATC
CCATACTTTTAACCAAAGAATTTTGCGACTGGCTGTATCAATGCAACCAT
AGATAGCAAGAATAAAAGTGACCTCTcggtttctttttgttttgaagtct
TCGCTCCTCTAGTAGGTCAGGGTTAGCATCATACATGACGTTATGGACTA
CATCTCGTGGCACATTCATGGAATATTTCTGCCGAATTTTCTGGTGCATA
GCCCTGTATCCGAGCAAAGCACCAGGTCCAGCCATTTCTTTTGTCACGGC
ACTTTCTATGCGTTCAATTGGAATTGTGTAATCAGTGTATCGAATGCCAA
AATGTG
Run BLAST on NCBI

transcript from alignment at sc0000025:697193..697698

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003238 ID=TCONS_00003238|Name=TCONS_00003238|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at sc0000025:697193..697698 (Clytia hemisphaerica)
CACATTTTGGCATTCGATACACTGATTACACAATTCCAATTGAACGCATA
GAAAGTGCCGTGACAAAAGAAATGGCTGGACCTGGTGCTTTGCTCGGATA
CAGGGCTATGCACCAGAAAATTCGGCAGAAATATTCCATGAATGTGCCAC
GAGATGTAGTCCATAACGTCATGTATGATGCTAACCCTGACCTACTAGAG
GAGCGAagacttcaaaacaaaaagaaaccgAGAGGTCACTTTTATTCTTG
CTATCTATGGTTGCATTGATACAGCCAGTCGCAAAATTCTTTGGTTAAAA
GTATGGGATACAAACAGCAACCCACAGCTGATTGGAAAGTGGCATTGGGA
CTACCTATCCAAATCTAATTGTATGCCTAATTTTATGCGAATTGATAAAG
GTTCAGAAACTGGGACAATGGCAACAATGCAATCCTATCTACGAAACAAA
ACTTGTAGCGAAGACCAGGTGATTGATGAACCAAGTGATTCTGTTATTTA
TGGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001798XLOC_001798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003238-exon-sc0000025-1491911889:697193..697698TCONS_00003238-exon-sc0000025-1491911889:697193..697698Clytia hemisphaericaexon
TCONS_00003238-exon-sc0000025-1510915933:697193..697698TCONS_00003238-exon-sc0000025-1510915933:697193..697698Clytia hemisphaericaexon
TCONS_00003238-exon-sc0000025-1575043694:697193..697698TCONS_00003238-exon-sc0000025-1575043694:697193..697698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:697193..697698 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.189184	0.182035	0.83283	0.919863	1.1768	1.07504	0.720018	0.224061	0.492729	0.564435	0.324018	0.196506	0.120415	0.312851	0	0	0.079073	0	0.132877	0	0.338005	0	0	1.02602	0.876046	0.163795	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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