TCONS_00003240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003240
Unique NameTCONS_00003240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003240 ID=TCONS_00003240|Name=TCONS_00003240|organism=Clytia hemisphaerica|type=transcript|length=467bp
GATTGTCGATGGTTTGAACGAGATGAGAATTACAAACTACTTGCTTTACA
CTTGGAGAAGTTAAATAAAAAGACGCACCAAGTTCTTACTGTTGTCGTTA
AAGATAACTCTATGTTCCATGAATTGGAAAATCGGTGTAAAAATAATCCT
GAGATTGTACAAAAACTTATTATTGCTGATCAAGAGATGTCCAACCAAGA
TATACTTGAATCAGGGAAACTTCTAGAATCATTTTATGAATCAGAAGATA
ATTAtctcaaactttttcaaatacaTCCCTTATTACAGTTGAGACTGAAA
GCAAAACTCGTTCAAGATAGAGAAATGAATAATAGACGAGACAGCTCACA
TCAAACAAGACGATCGACcatgaaacaaataaaagaatttcaagCAGAGG
CAATCAGAACCCAAGAACGTATTGAACATACTGAACAAACGGAAAACCAA
GACAAAACTATTCGGTC
Run BLAST on NCBI

protein sequence of TCONS_00003240-protein

>TCONS_00003240-protein ID=TCONS_00003240-protein|Name=TCONS_00003240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
DCRWFERDENYKLLALHLEKLNKKTHQVLTVVVKDNSMFHELENRCKNNP
EIVQKLIIADQEMSNQDILESGKLLESFYESEDNYLKLFQIHPLLQLRLK
AKLVQDREMNNRRDSSHQTRRSTMKQIKEFQAEAIRTQERIEHTEQTENQ
DKTIR
Run BLAST on NCBI

transcript from alignment at sc0000025:719175..719641

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003240 ID=TCONS_00003240|Name=TCONS_00003240|organism=Clytia hemisphaerica|type=transcript|length=467bp|location=Sequence derived from alignment at sc0000025:719175..719641 (Clytia hemisphaerica)
GACCGAATAGTTTTGTCTTGGTTTTCCGTTTGTTCAGTATGTTCAATACG
TTCTTGGGTTCTGATTGCCTCTGcttgaaattcttttatttgtttcatgG
TCGATCGTCTTGTTTGATGTGAGCTGTCTCGTCTATTATTCATTTCTCTA
TCTTGAACGAGTTTTGCTTTCAGTCTCAACTGTAATAAGGGAtgtatttg
aaaaagtttgagaTAATTATCTTCTGATTCATAAAATGATTCTAGAAGTT
TCCCTGATTCAAGTATATCTTGGTTGGACATCTCTTGATCAGCAATAATA
AGTTTTTGTACAATCTCAGGATTATTTTTACACCGATTTTCCAATTCATG
GAACATAGAGTTATCTTTAACGACAACAGTAAGAACTTGGTGCGTCTTTT
TATTTAACTTCTCCAAGTGTAAAGCAAGTAGTTTGTAATTCTCATCTCGT
TCAAACCATCGACAATC

Coding sequence (CDS) from alignment at sc0000025:719175..719641

>TCONS_00003240 ID=TCONS_00003240|Name=TCONS_00003240|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000025:719175..719641 (Clytia hemisphaerica)
CCGAATAGTTTTGTCTTGGTTTTCCGTTTGTTCAGTATGTTCAATACGTT
CTTGGGTTCTGATTGCCTCTGcttgaaattcttttatttgtttcatgGTC
GATCGTCTTGTTTGATGTGAGCTGTCTCGTCTATTATTCATTTCTCTATC
TTGAACGAGTTTTGCTTTCAGTCTCAACTGTAATAAGGGAtgtatttgaa
aaagtttgagaTAATTATCTTCTGATTCATAAAATGATTCTAGAAGTTTC
CCTGATTCAAGTATATCTTGGTTGGACATCTCTTGATCAGCAATAATAAG
TTTTTGTACAATCTCAGGATTATTTTTACACCGATTTTCCAATTCATGGA
ACATAGAGTTATCTTTAACGACAACAGTAAGAACTTGGTGCGTCTTTTTA
TTTAACTTCTCCAAGTGTAAAGCAAGTAGTTTGTAATTCTCATCTCGTTC
AAACCATCGACAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001800XLOC_001800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003240-exon-sc0000025-1491911889:719175..719641TCONS_00003240-exon-sc0000025-1491911889:719175..719641Clytia hemisphaericaexon
TCONS_00003240-exon-sc0000025-1510915933:719175..719641TCONS_00003240-exon-sc0000025-1510915933:719175..719641Clytia hemisphaericaexon
TCONS_00003240-exon-sc0000025-1575043694:719175..719641TCONS_00003240-exon-sc0000025-1575043694:719175..719641Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003240-proteinTCONS_00003240-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:719175..719641 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.268189	0.155697	0	0	0.293076	0	0	0	0	0	0	0.45727	0	0	0	0.722601	0.317418	0	0.458891	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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