TCONS_00003244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003244
Unique NameTCONS_00003244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003244 ID=TCONS_00003244|Name=TCONS_00003244|organism=Clytia hemisphaerica|type=transcript|length=341bp
AACATTTGCAAttaggaaatcttttaaacttaATGTTTCATCCTTGTGTG
AAgataataattatgaaaattttcctttgggaaATGTTTTAAACTTGACA
TTACATTCCATGGAAAGTTAGTAAATGTAATATTTCCcttattgaaaatt
tctaaacttgaaatttcattaTATGTAAAGTTAGTAAATATGATAATTCC
ATGTGTCAGGAAATGTCTGAATAGGAATTCTCCATCTTTACATTTCGTAG
GAAATATGGTCTTTCAAAAGGtatgaaatatatagaaaatgTTAGATTTC
CTATATATTTCCTACATTagaaatctatgatttcgcccagt
Run BLAST on NCBI

transcript from alignment at sc0000025:800009..800349

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003244 ID=TCONS_00003244|Name=TCONS_00003244|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at sc0000025:800009..800349 (Clytia hemisphaerica)
actgggcgaaatcatagatttctAATGTAGGAAATATATAGGAAATCTAA
cattttctatatatttcataCCTTTTGAAAGACCATATTTCCTACGAAAT
GTAAAGATGGAGAATTCCTATTCAGACATTTCCTGACACATGGAATTATC
ATATTTACTAACTTTACATAtaatgaaatttcaagtttagaaattttcaa
taagGGAAATATTACATTTACTAACTTTCCATGGAATGTAATGTCAAGTT
TAAAACATttcccaaaggaaaattttcataattattatcTTCACACAAGG
ATGAAACATtaagtttaaaagatttcctaaTTGCAAATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001804XLOC_001804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003244-exon-sc0000025-1491911889:800009..800349TCONS_00003244-exon-sc0000025-1491911889:800009..800349Clytia hemisphaericaexon
TCONS_00003244-exon-sc0000025-1510915933:800009..800349TCONS_00003244-exon-sc0000025-1510915933:800009..800349Clytia hemisphaericaexon
TCONS_00003244-exon-sc0000025-1575043694:800009..800349TCONS_00003244-exon-sc0000025-1575043694:800009..800349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:800009..800349 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.268769	0	0	0	0.36245	0	0	0	0.226487	0.841621	0	1.78999	0.17875	0.368818	0	0	0	0	0	0	0.519723	0	0	0	0	0	0.737072	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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