TCONS_00003252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003252
Unique NameTCONS_00003252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003252 ID=TCONS_00003252|Name=TCONS_00003252|organism=Clytia hemisphaerica|type=transcript|length=599bp
CTTGGAGAAAGCCAATGTTTCGTCCTCAATGTAAGGAAAAAGACATGGCC
TGTTTTTGGTTTCTTCTACTTATTGTTTGTGTTCAACTACCTCACAGCCT
GGGAACTAACCAAACCACCCGATCAGTTTGCAGAGAATTGTGCAGAAATG
AAAGCTCGAACAGGTTACTTTCCACTGTGCAAAGTCAAACAGGGAGCGTG
CGAAACCGCCGCAATTGTTTACGTGGTTGTATCAAGAAACGAAATGGAGA
AACACAACAACAAGAGAGAAAAGAGGGTGGAGATGGTAGTACGTATTCGA
TTAAATTGAATAATCCAGCCATCCCTTCAGGTCGGATGAGTGATAAAGCT
ACGTGTCACTATCTAGAATATCTTTCCGAGACAATAATATACATCGGAGA
CCAACAGATAAAAGTCATTCACCAAGCCATCAAAATGTATTGTGCTGCGA
TATGAACCGGACCGGAGATCGGAAATAAAAGCAATTTAAAACTTTCCCGG
ACGCCATTCATGGTTTTCAGATAGACTTTTTAATAGACTTTATTTTTACC
TAACAAATAACAGTTGCTtagttaaagaaaaaaattatttaaagaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00003252-protein

>TCONS_00003252-protein ID=TCONS_00003252-protein|Name=TCONS_00003252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
WRKPMFRPQCKEKDMACFWFLLLIVCVQLPHSLGTNQTTRSVCRELCRNE
SSNRLLSTVQSQTGSVRNRRNCLRGCIKKRNGETQQQERKEGGDGSTYSI
KLNNPAIPSGRMSDKATCHYLEYLSETIIYIGDQQIKVIHQAIKMYCAAI
Run BLAST on NCBI

transcript from alignment at sc0000025:981247..981845

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003252 ID=TCONS_00003252|Name=TCONS_00003252|organism=Clytia hemisphaerica|type=transcript|length=599bp|location=Sequence derived from alignment at sc0000025:981247..981845 (Clytia hemisphaerica)
tttttctttaaataatttttttctttaactaAGCAACTGTTATTTGTTAG
GTAAAAATAAAGTCTATTAAAAAGTCTATCTGAAAACCATGAATGGCGTC
CGGGAAAGTTTTAAATTGCTTTTATTTCCGATCTCCGGTCCGGTTCATAT
CGCAGCACAATACATTTTGATGGCTTGGTGAATGACTTTTATCTGTTGGT
CTCCGATGTATATTATTGTCTCGGAAAGATATTCTAGATAGTGACACGTA
GCTTTATCACTCATCCGACCTGAAGGGATGGCTGGATTATTCAATTTAAT
CGAATACGTACTACCATCTCCACCCTCTTTTCTCTCTTGTTGTTGTGTTT
CTCCATTTCGTTTCTTGATACAACCACGTAAACAATTGCGGCGGTTTCGC
ACGCTCCCTGTTTGACTTTGCACAGTGGAAAGTAACCTGTTCGAGCTTTC
ATTTCTGCACAATTCTCTGCAAACTGATCGGGTGGTTTGGTTAGTTCCCA
GGCTGTGAGGTAGTTGAACACAAACAATAAGTAGAAGAAACCAAAAACAG
GCCATGTCTTTTTCCTTACATTGAGGACGAAACATTGGCTTTCTCCAAG

Coding sequence (CDS) from alignment at sc0000025:981247..981845

>TCONS_00003252 ID=TCONS_00003252|Name=TCONS_00003252|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0000025:981247..981845 (Clytia hemisphaerica)
TCATATCGCAGCACAATACATTTTGATGGCTTGGTGAATGACTTTTATCT
GTTGGTCTCCGATGTATATTATTGTCTCGGAAAGATATTCTAGATAGTGA
CACGTAGCTTTATCACTCATCCGACCTGAAGGGATGGCTGGATTATTCAA
TTTAATCGAATACGTACTACCATCTCCACCCTCTTTTCTCTCTTGTTGTT
GTGTTTCTCCATTTCGTTTCTTGATACAACCACGTAAACAATTGCGGCGG
TTTCGCACGCTCCCTGTTTGACTTTGCACAGTGGAAAGTAACCTGTTCGA
GCTTTCATTTCTGCACAATTCTCTGCAAACTGATCGGGTGGTTTGGTTAG
TTCCCAGGCTGTGAGGTAGTTGAACACAAACAATAAGTAGAAGAAACCAA
AAACAGGCCATGTCTTTTTCCTTACATTGAGGACGAAACATTGGCTTTCT
CCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001812XLOC_001812Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003252-proteinTCONS_00003252-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003252-exon-sc0000025-1491911889:981247..981845TCONS_00003252-exon-sc0000025-1491911889:981247..981845Clytia hemisphaericaexon
TCONS_00003252-exon-sc0000025-1510915933:981247..981845TCONS_00003252-exon-sc0000025-1510915933:981247..981845Clytia hemisphaericaexon
TCONS_00003252-exon-sc0000025-1575043694:981247..981845TCONS_00003252-exon-sc0000025-1575043694:981247..981845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:981247..981845 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.63678	0.443543	1.02999	1.00769	0.613381	0.775523	3.27472	2.73728	12.5718	8.64069	21.0132	16.7819	0.0605003	0.251321	0.20662	0.221735	0.0682898	0.13999	0.193403	0.202383	0.0879536	0.128702	0.208606	0.189653	0.0976689	0.174334	0.374208	0.133122	0	0.10287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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