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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003256 ID=TCONS_00003256|Name=TCONS_00003256|organism=Clytia hemisphaerica|type=transcript|length=2597bp
CGCACTCTGATGTAATATTGTTACATGACGATTGCATGTTGAATCGACGT
AACATCTTGGGCAGGAACACGGGCAAACAGCAAAGGTAAAATAGTACCAT
ACAATGATCACAAGGAATACAGTAACTTTGCCACCATTTATTaaatcatt
ctttcaaaatgacTTGATACTCAGATATGAAGGGTGAAGCAACCAAGAAA
ACTGACAAAGACAGTGAACAGAAGCAGCAACAAAGGAACCCAGCCACAAA
TCAGCAACTTGGTTCAAACGAGTCTGGTGCTGGTTCATCGGACACTGAGA
AGACGAGTTCGTCGTTCTTCAAAACCAACACAGTCAGTGGAAATTTGAAT
CGTTTGAAGGAGCTACCTTCCTTTCATTCTGGATACGCGAGTCTGGACGA
ATTTTTATACGCTGCCTCGTCAGATAATAATGGCAATCGACCCACCAGTA
GTAGTAGTGGTGGGATTACAAGTCAAGTGAAACTGACGCAAAACAAAACA
GCTCAGAAAAGACAATCAAGAGGAGAACGAACCAAGTCGTCCAACATGCA
AATGATATCCTCCTCGTCTCAAAATAACAATGGAGCTACTACCATTTCTA
AAGCAGCCTCACAGGCTaaacaatcaaataaaaacaaacgcCAAGCACAG
GCGGCCATTGATGAGATGAACCGGCAATATGACCACAATTTGTGTTTGGA
TCGTTTTATTAATGATATTGAACAACAGCAAAacgaaaagaaaagtgaaa
aagaagtTAAGCGAGACCTCAATACCAGTCCGTCCANTTCGACTCAAAAT
AACAATGGTGCTACTACCATTTCTAAAGCAGCCTCGCAGGCTaaacaatc
aaataaaaacaaacgcCAAGCACAGGCGGCCATTGATGAGATGAACCGGC
AATATGACCACAATTTGTGTTTGGATCGTTTTATTAATGATATTGAACAA
CAGCAAAacgaaaagaaaagtgaaaaagaagtTAAGCGAGACCTCAATAC
CAGTCCGTCCAATTCTAGTTTATCCAGCTCCTCTTCGAACATGCCACAAT
CGAACGAAGATACTGATAGTGGCAGTCGAAACAGCGAATCCATACAGTCG
AGtgaaaatgctaagaacaaaaAATACAGTAACACCAATAGTAGTAACTC
AAGCAACAATGGCAGTGGAAAAGAGGATAAAACTGTAAATACGGATAAAG
AATTTCCTAAATCGAGTGGTTCAGAACAAAACGGAGAGCATTCTAAAACG
TTCTCTTCAATGGAAAGCAGCGGTATCGGTTCGGTAATGACGGGTGAAAC
GTGTGAATCGATGGACACTTCCGAAGGGAATCAAGAGGAGAAAATTAAGA
ACTACAAGGGCGGTAAATTAGGGCGTAAGCGTAAACGTGGTTACATTTAT
AATCCGAAGCCGGTAATCGAGAAACCGCCAAAACAATTTGTACCAGATCA
GGAGAAAGATCAGTCGTACTGGGATAAGCGACAGCGGAATAACGAAGCGG
CTAGGCGTTCACGCGAGATGAGACGTGTAAAAGAGAAAGAAACCCACGAT
AAGCTAGACCGCTTGAAGAAGGAGAACGAAGCGCTACGTGTTGCCATCAC
ACTCTTGATTCAGAGAAATAGNAGAGAACGAAGCGTTACGTGTTGCCATC
ACACTCTTGATTCAGAGAAATAGGAACTTGGAATTTATCATTAACGAACT
AGAAAAGACGGATGGTCCGCCTGCTGTACCAGTCACCTGTTGAAATTTCC
TTTGAATGTTTGTTCTGTGgaggtgttttttttattcgaCAACAAACGAT
TTTATTCTGCCATCGAAAGGCAAAACTTTGTTATTCCCGGGGAAACTTTC
TTTTTGTCGTATTCCATTTGAAATCGActcgaatcttttttttttaagat
taaatgttaagaaaaaaaTCAATCCGGTCAGAAAACAGTGGTAGCGTTCC
AAGAAAAGCTCTGCTGGAAAGTTTTTAGGGGTATAAAAAAGTCACGCACT
TGAAAGatacttttgtaaatttttacttTCTCGATTTGTCCTCACATCTT
CAGTGTTAAATTTgtacattttatttttcttatttttatgtAAATTCAAG
CGTATAGTTTCATTTATTTGTTTCTTGGTTTATACCCTGAAAGGTTATCT
TTCAGGTCAGAACATACACATACATACCCGCCTATCTTTTTTAACGAAAG
CCGCGAATCTAgagttaagaaaataaatgacatcattttctattttgtcc
CTCGTTTTGTCTCTCCCTTGAATTTTTCGACTAGAGATTTGCGAACTACC
TATCCACATTAATCACACTCCTACTTGAGCTTCCTTACAAGGAAGGATTA
AGCTTTGAAGAAATTTAAAAGGtgtctatttattttagaaagCAATCATT
TTTCGATTAGGGAAAATGATTAAAAACCACGATGTACAGTAATTTCACGT
TGTTTATTTTGCTATCGTGAATAAATTtcatattataaaaataattataa
aataaCAAAGTTATATTTTGTCCAagccttttcatttcaatcTAGAATGA
AAAAAGAACTTTTATTGATTTCGAAAAATGCTAGTGTTATCTCTAAA Run BLAST on NCBI transcript from alignment at sc0000026:99361..107856+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003256 ID=TCONS_00003256|Name=TCONS_00003256|organism=Clytia hemisphaerica|type=transcript|length=8496bp|location=Sequence derived from alignment at sc0000026:99361..107856+ (Clytia hemisphaerica)
CGCACTCTGATGTAATATTGTTACATGACGATTGCATGTTGAATCGACGT
AACATCTTGGGCAGGAACACGGGCAAACAGCAAAGGTAAAATAGTACCAT
ACAATGATCACAAGGAATACAGTAACTTTGCCACCATTTATTaaatcatt
ctttcaaaatgacTTGATACTCAGATATGAAGGGTGAAGCAACCAAGAAA
ACTGACAAAGACAGTGAACAGAAGCAGCAACAAAGGAACCCAGCCACAAA
TCAGCAACTTGGTTCAAACGAGTCTGGTGCTGGTTCATCGGACACTGGTG
AGTTTGTTTTAATACCATTTTATTGCATTTGCAATAATTAACAACTTCAT
TGGTTATATTCCTTGTCTCCAGGCTGTAGTTTAGTTGCTTGAATTTGGAA
CACAAGAGGTAATAGTCATTTAGGAAAATGCGACAACGGTATAGAATAAA
TTACTCCAGCATACATTTAACTTCAGCTCAGCCAGTACAAGCAGGATGaa
ttaccgtgaagtcgggtgaCTTGCATCAgcggagggaaacttgcatagcc
ctcaaatgaatgacttggctggtcattaaaatacaaagttaaatcaaaac
aaaatggtagagtccaggcgtagttaatcgatataatcgataatcttgag
taatcgataaataatcaaagtaaacaatggattagatatcgattaaccga
tagaatcgataggtaatcagaccttcaaaaaatcttgagtatcgatcagc
gatcgattatttccaagctatcgatcacttatcgatcacatatcgactac
agacaacctatcgattacttatatcaatcatgtatcgattgttaacaatc
atcgattacttatcgttcatgcattgattacttatcaatttttTACTTAT
CTTCGATCACGTATCGTTATCGGTTATATATCGTTCGTGACCGACTATTA
ACTACATTACCGGCCCTTTTTATGCCGGCCCTTATTCCACCAACGAGCCC
AAAAGTAACGCTAATAAGGttcggcgtaaaaggggccaagataaggtatt
taatgaagtaaagaaaatttctggaattcgccaaatctcatacctatcgt
attactttgaataaacgcccgctttcgaaattaataatgctcctccaaaa
aggcaaaccattcactaacgccccttctctaaataaaacggtaactttgt
ttttttttaaactttttttgttcagcctttcagagggtttgagaatgctt
cagccgaaatttactgcatgcttataaaaaaaatgagtgtagtagctttt
ctaggccctatgctaccaggggattggattcaattcaaaagtacacCCCA
ATCGAGATCAgcgaaaaatgttgcttttaatttcgcgaaaatggcgaaaa
ttcgagaaatcaGAAATTTATTCTCGCAGaggcgaaagttaatccaaCAG
TCTCGctatctccaccgtagaggcggtaggtaaaaatgctcactttagta
ctggaaggttagagaaatgtaaacattgccattttttttctttcctttag
aGAGAataatttagatatttgaacatgatatcaatgataatttgatggat
ctctcctgaaaatttcacaaaaattcatccagaggaaaagaggttatgat
taaaaggagttctttacctaccatttctctgctgggttttcttatgagaa
ctggatgtttacctaccatttctctgctgggttttcttatgagaactgga
tgtttacctaccattttttacgggggagagtgaagttttccgtggttgcc
aaaatcaaaacaatggaaaattgatCATACACGTGCGCAGTCaacactgt
taaacggtgtattaaagtaccactccctaaaatctgataaataatcaatc
acgaatcgatagttgatcgattaactatttgatcgatgattaatcaattt
ttgattgatATGTATtcgatcaaaagctgtgatcgatagccgatcgattt
ttaatcgatacttaatttaatcgaagtataatcgatctataatcgataaa
caatcgagCTTAggaaaaatcttgagtatcgatcacctatcgattctatc
ggttaatcgatatctaatccatcgattacttatcgattatttatcgatta
ctcaagattatcgattatatcgattaactacgcctggtagagtagagctg
caagcggagcctTTTGTTTGAAAGACTTTCGTGGTTTTTTCTTTACAAGA
TTTCTATTAGCAGTGTCAAATTACTGCAGTTTTAACGTCAAAAAAAGACC
ACCATTTTAACTTCTACGAGTGCcttaaaaaattgagttttgGGAATCGA
AGTTTAGCAGAAAAATTTCCGATTTTTTCATCACCCGGTGGACtggaaac
aaaaatatctttccgGTTTGCCTGCGGCCAATTACCTCAAAGTCAGGGTT
AGTTATGGAACTCAACTTTGATTTAAACTTCATGACGCGACAAGGCAGAA
TCAGACCTGCCAACTTGAAATGTTCATTTTGCGAggagattaaaaatttc
caagtgaaatCCGAAATCTTAGcccgatttttcaaaatcagaaaacaggg
aaattttttttaccgaaAATTGAGNCGATCTGAAATCTTAGcccgatttt
tcaaaatcagaaaacagggaaattttttttactgaaaattgaggaaactt
ttttctgaaaatcggaaaatctgggaaatattttttcggaaatcggaaaa
tcagggagacttttttgctaaaaatcagCAAATCTGAGAAACAGATGtgt
gaaatcaagtttttcaaaaatcgcgTGAGTCAATGAAATACGCGAGTTTC
ACACTCAATGCGTCTGTATTTACTCTTGGGTACTTTAATAACTGGGggga
ggggttggaataagcaggcagggttggaaaaaatctcaaaagtgaaaagg
ctgtttttaattttacgaatgttttaataatttcaggaggggcagcgtcG
GATAACAGGTTgctaaaagggcatgaaaaaggcctgtcaattgaacacaa
ttgaaTCGTAATCAAATATTACTCAGGATTTGCCCTTGGATTGCTTGAAT
TATATACGTTCAATTGTATTTTGCTTATGTTTGATTATGTTTGTGTTTGT
GTTACTTATGCGCTCGCTCTTATCTGATTTTCCAAGCTCTAGAAGAGTAG
GTTAATTTAATTTCAATCAATCTCGTCAAAgattatcaaaatcaaagtaa
TAGAATGCAATTGAACACAAACGAATATTACCTAGGAATTGGCTTTTCGA
TTCCATTGACTGTACCGtctagtttttctgattttcagatttttttctga
aaattccaCAATCCTAATCTTTCAGAGAAGTTAACAATTTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTTATTTTTCCTActcgctttctccgtaactttaaaaaaaatat
acactgaatgaccgacaggattttgagtttgaccgacaggatttcatttc
tgtcaGACATGATgtggacatgttcataaaacaTAGGACGAAAGTTTACA
CAttgaaaaatggcttttttacatttttatcaataacttGGTAAGTATTG
CAGTAATNAGTTAACAATTTTTCCATATCTTTTAGAGCTTGAGTGtgctg
gaagaaaatttctacataaGTTACCAGATAAATGTAAGCCAAATCAAAAA
CAGCCAAATGCAATTGAATGCCTTCAATCTTGATCTCAATCAAATATAAA
TTGAATCTAGTAATGTGGTAATAATTAAtataatattataataacagggt
tgcaaataagcgtcggtcatcggtcaatgtccgactgaaaaagctatttg
accgactgaaaatcttttgtgtcggtcatgatgtccgaatgaNGTgataa
aattatcaattattaaGGTTCTAATGGATTATTTACAATTCTGTAAAaac
aaagataattttgaagCATTGGTAATGTGGCAGTAGCTTTAGGCAAGTAA
TATAACACCCTTNTccctgtctcttacttagcctattcttttaatactct
cttcctttgtagctttcagggtgtttctaagttaacttttgtcaacttgc
tttcttcgtaaccttctttgtttctaagatcacttttatcgactcgcttt
cttcgtaactttcaagagtgtttctaagatcacttNTGTTACTTATTTAT
CAggaatttatttgattattggAAAATAAACCAATGTTTCAGTTTTATCA
ATGATTTGACTTGCAATTTAAACTTATTGCAATCAAAGAGACCCAAACCA
TTTCCTTGAAATTAGtgataaaaatgtacaaaattaaaatttcaaactgt
TACAGTTTTATCATAAAACCATTTTCAGCAGTTTTGAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACTCCTgagttacat
ttttatcatctgTGAAAGTTTCATAGTAAAATATGCATTACTTCCAGAGA
TATTATGTATTtatcattttgggaaaatttccagttttacatttttatca
tttttcttgcctgacTTTGGGAGCTAATATCTGACGCATCGCTTATTATT
TAGAAATCTAACCTGGACAGTTACAAAATATCATCTATTTACAATTGAAA
AACCAAAGTCTTTTGTCTTGAAAAGAATGAGAGATAAATCAGTAACAAat
taaaaagccatttttcaaTGTGTAAACTTTCGCCCTATGTTTTATGATCA
TGTCCATgtccgattgactaaaaatatttatttgcagccctgtaaTAATA
ATATTCAATCGCATAGGACAACAACAAATTTCAATCAGTCAattgcgttt
gatttggtttaACTAGTTTGATCCTCAATTCCATTGAGATTAAGTAGTCT
GGCCCTAGGTAACAGCTGTGTTATAAAAGACAAATCATCTATATAGTCTT
GTGACATtatctttaaaaataattatgcTGGAGTAATTGGTTTTCTCCCA
AATGAATAAAGTGAACAGCTCTAAATTGTACATGCGGCTCTGGCTGTAGC
GCTGCAATAAATAATATTCTGCAATGTTTCGTTTTTTTCGTTGGCCACAA
CGAATATCAATTTAACTTTCAGGTTTTAAccattaccccccccccttgct
aGAATGTCAAGCGTGGAAACCAAAAAATTACCTCAATTTTCTTGATTCTA
ccttggcggatggccaaaatagttttttagagggaatttaatttgggaAG
ATGGCtgggaaaattaaattttaagggaatttaatttggcggttgcagga
aatttttggccaaaatcgttatcaaataagcaaaaaaacctgttttaagg
cgtTAAACAGAATAAATTTGGAGGATggaagaaaaactaaattttggcgg
gaacttaatttggcagattttggctaaatccgtgaaatctgccaaatttt
ctttccgccaaaatttcttcctttatcaATCAATCCTGCAttgtattgtt
tttaaaaagcagaaaaaacccACCCCCTTTAAATCAATTTGACATTCATT
ATAATAACAGACAACGAGAAGGAGTTTGTTGCTTATGAACCCAGTGTTTA
TAAACAGTTCTTAAAACACAttcttgtttttcttgttttttcagAGAAGA
CGAGTTCGTCGTTCTTCAAAACCAACACAGTCAGTGGAAATTTGAATCGT
TTGAAGGAGCTACCTTCCTTTCATTCTGGATACGCGAGTCTGGACGAATT
TTTATACGCTGCCTCGTCAGATAATAATGGCAATCGACCCACCAGTAGTA
GTAGTGGTGGGATTACAAGTCAAGTGAAACTGACGCAAAACAAAACAGCT
CAGAAAAGACAATCAAGAGGAGAACGAACCAAGTCGTCCAACATGCAAAT
GATATCCTCCTCGTCTCAAAATAACAATGGAGCTACTACCATTTCTAAAG
CAGCCTCACAGGCTaaacaatcaaataaaaacaaacgcCAAGCACAGGCG
GCCATTGATGAGATGAACCGGCAATATGACCACAATTTGTGTTTGGATCG
TTTTATTAATGATATTGAACAACAGCAAAacgaaaagaaaagtgaaaaag
aagtTAAGCGAGACCTCAATACCAGTCCGTCCANTTCGACTCAAAATAAC
AATGGTGCTACTACCATTTCTAAAGCAGCCTCGCAGGCTaaacaatcaaa
taaaaacaaacgcCAAGCACAGGCGGCCATTGATGAGATGAACCGGCAAT
ATGACCACAATTTGTGTTTGGATCGTTTTATTAATGATATTGAACAACAG
CAAAacgaaaagaaaagtgaaaaagaagtTAAGCGAGACCTCAATACCAG
TCCGTCCAATTCTAGTTTATCCAGCTCCTCTTCGAACATGCCACAATCGA
ACGAAGATACTGATAGTGGCAGTCGAAACAGCGAATCCATACAGTCGAGt
gaaaatgctaagaacaaaaAATACAGTAACACCAATAGTAGTAACTCAAG
CAACAATGGCAGTGGAAAAGAGGATAAAACTGTAAATACGGATAAAGAAT
TTCCTAAATCGAGTGGTTCAGAACAAAACGGAGAGCATTCTAAAACGTTC
TCTTCAATGGAAAGCAGCGGTATCGGTTCGGTAATGACGGGTGAAACGTG
TGAATCGATGGACACTTCCGAAGGGAATCAAGAGGAGAAAATTAAGAACT
ACAAGGGCGGTAAATTAGGGCGTAAGCGTAAACGTGGTTACATTTATAAT
CCGAAGCCGGTAATCGAGAAACCGCCAAAACAATTTGTACCAGATCAGGA
GAAAGATCAGTCGTACTGGGATAAGCGACAGCGGAATAACGAAGCGGCTA
GGCGTTCACGCGAGATGAGACGTGTAAAAGAGAAAGAAACCCACGATAAG
CTAGACCGCTTGAAGAAGGAGAACGAAGCGCTACGTGTTGCCATCACACT
CTTGATTCAGAGAAATAGNAGAGAACGAAGCGTTACGTGTTGCCATCACA
CTCTTGATTCAGAGAAATAGGAACTTGGAATTTATCATTAACGAACTAGA
AAAGACGGATGGTCCGCCTGCTGTACCAGTCACCTGTTGAAATTTCCTTT
GAATGTTTGTTCTGTGgaggtgttttttttattcgaCAACAAACGATTTT
ATTCTGCCATCGAAAGGCAAAACTTTGTTATTCCCGGGGAAACTTTCTTT
TTGTCGTATTCCATTTGAAATCGActcgaatcttttttttttaagattaa
atgttaagaaaaaaagtcaatCCGGTCAGAAAACAGTGGTNTTTAAATTA
AATGTTAAGAAAATAAGTCAATCCGGTCAGAAAACAGTGGTAGCGTTCCA
AGAAAAGCTCTGCTGGAAAGTTTTTAGGGGTATAAAAAAGTCACGCACTT
GAAAGatacttttgtaaatttttacttTCTCGATTTGTCCTCACATCTTC
AGTGTTAAATTTgtacattttatttttcttatttttatgtAAATTCAAGC
GTATAGTTTCATTTATTTGTTTCTTGGTTTATACCCTGAAAGGTTATCTT
TCAGGTCAGAACATACACATACATACCCGCCTATCTTTTTTAACGAAAGC
CGCGAATCTAgagttaagaaaataaatgacatcattttctattttgtccC
TCGTTTTGTCTCTCCCTTGAATTTTTCGACTAGAGATTTGCGAACTACCT
ATCCACATTAATCACACTCCTACTTGAGCTTCCTTACAAGGAAGGATTAA
GCTTTGAAGAAATTTAAAAGGtgtctatttattttagaaagCAATCATTT
TTCGATTAGGGAAAATGATTAAAAACCACGATGTACAGTAATTTCACGTT
GTTTATTTTGCTATCGTGAATAAATTtcatattataaaaataattataaa
ataaCAAAGTTATATTTTGTCCAagccttttcatttcaatcTAGAATGAA
AAAAGAACTTTTATTGATTTCGAAAAATGCTAGTGTTATCTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003256-exon-sc0000026-1491911889:99361..99657 | TCONS_00003256-exon-sc0000026-1491911889:99361..99657 | Clytia hemisphaerica | exon |
| TCONS_00003256-exon-sc0000026-1510915933:99361..99657 | TCONS_00003256-exon-sc0000026-1510915933:99361..99657 | Clytia hemisphaerica | exon |
| TCONS_00003256-exon-sc0000026-1575043694:99361..99657 | TCONS_00003256-exon-sc0000026-1575043694:99361..99657 | Clytia hemisphaerica | exon |
| TCONS_00003256-exon-sc0000026-1491911889:105505..107125 | TCONS_00003256-exon-sc0000026-1491911889:105505..107125 | Clytia hemisphaerica | exon |
| TCONS_00003256-exon-sc0000026-1510915933:105505..107125 | TCONS_00003256-exon-sc0000026-1510915933:105505..107125 | Clytia hemisphaerica | exon |
| TCONS_00003256-exon-sc0000026-1575043694:105505..107125 | TCONS_00003256-exon-sc0000026-1575043694:105505..107125 | Clytia hemisphaerica | exon |
| TCONS_00003256-exon-sc0000026-1491911889:107178..107856 | TCONS_00003256-exon-sc0000026-1491911889:107178..107856 | Clytia hemisphaerica | exon |
| TCONS_00003256-exon-sc0000026-1510915933:107178..107856 | TCONS_00003256-exon-sc0000026-1510915933:107178..107856 | Clytia hemisphaerica | exon |
| TCONS_00003256-exon-sc0000026-1575043694:107178..107856 | TCONS_00003256-exon-sc0000026-1575043694:107178..107856 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:99361..107856 + |
Blast
The following BLAST results are available for this feature:
|
