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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003273 ID=TCONS_00003273|Name=TCONS_00003273|organism=Clytia hemisphaerica|type=transcript|length=4145bpRun BLAST on NCBI protein sequence of TCONS_00003273-protein >TCONS_00003273-protein ID=TCONS_00003273-protein|Name=TCONS_00003273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1212bp RLNNIFDKFDQLQRSGNMVAQDTEADGAVPTPIRKKSAKGGANVRRSTSFRun BLAST on NCBI transcript from alignment at sc0000026:454689..488538+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003273 ID=TCONS_00003273|Name=TCONS_00003273|organism=Clytia hemisphaerica|type=transcript|length=33850bp|location=Sequence derived from alignment at sc0000026:454689..488538+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000026:454689..488538+ >TCONS_00003273 ID=TCONS_00003273|Name=TCONS_00003273|organism=Clytia hemisphaerica|type=CDS|length=101892bp|location=Sequence derived from alignment at sc0000026:454689..488538+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003273 vs. Swiss-Prot (Human)
Match: CLAP1 (CLIP-associating protein 1 OS=Homo sapiens GN=CLASP1 PE=1 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 7.531e-67 Identity = 137/330 (41.52%), Postives = 202/330 (61.21%), Query Frame = 1
Query: 1 RLNNIFDKFDQLQRSGNMVA--------QDTEADGAVPTPIRKKSAKGGANVRRSTSFSAGDKKKRQLSVERSLXXXXXXXXXXXXXVDETDFTSLWEEVTDARVFSPKEYMTEFDRIRLILENGNNDWEKRVEALKELRTYVKIHTT-IDNSIKVLKNLEDALKTSVKDLRSAVVREVCVTISYMSSILRNKFDYLAENLFPQLIILIPNSVKVMSSSAHATIRLIIKHTHSPRLVPIIISNLLTSKSRDIRRKCGEYLALFLETWDTSALKNHVSLIEEGLRKGISDADSEARAAVRRAFWNFADHYKSRADSLMQTFDSSKQKLLNS 963
RLN IF KFD++Q+SGNM+ + DG P+ S+K + RR+ G R+L +L S ++ +GAVDE DF +++V +++S ++ ++IR IL + +DWE+RV ALK++R+ + DN + L+ L+ A K S KDLRS VVRE C+T+ ++SS+L NKFD+ AE + P + LIPNS K+M++S +RLII+HTH PRL+P+I SN TSKS +RR+C E+L L L+ W T +L+ H+S++ E ++KGI DADSEAR R+ +W F H+ A+ L T +SS QK L S
Sbjct: 215 RLNVIFTKFDEVQKSGNMIQSANDKNFDDEDSVDGNRPSSASSTSSKAPPSSRRNV----GMGTTRRLG-SSTLGSKSSAAKEGAGAVDEEDFIKAFDDVPVVQIYSSRDLEESINKIREILSDDKHDWEQRVNALKKIRSLLLAGAAEYDNFFQHLRLLDGAFKLSAKDLRSQVVREACITLGHLSSVLGNKFDHGAEAIMPTIFNLIPNSAKIMATSGVVAVRLIIRHTHIPRLIPVITSN-CTSKSVAVRRRCFEFLDLLLQEWQTHSLERHISVLAETIKKGIHDADSEARIEARKCYWGFHSHFSREAEHLYHTLESSYQKALQS 538 HSP 2 Score: 212.231 bits (539), Expect = 2.738e-55 Identity = 130/314 (41.40%), Postives = 202/314 (64.33%), Query Frame = 1
Query: 1525 IPGQ-NSTRSRNGQDFTEDAIWDALKKTKPQGRDRYNSHGSIXXXXXXXXXXXXXXXXX-XNKHRHISH------DFHEILHMLQQDASNTKRDGLTSFQGLLQSSMRYLNTEEAVRVKETFNRYFAEPNSK-IYSSFLDVLSEFLVQYKNDLQDWXXXXXXXXXXXXSTDILQSSQTKIARVLDVVRDSYPYDHQFQIITKYITDKTQTPSLNMKLSLLQYTRGLIALMDANDFTNSAITRLAITRVITWMSEPKSADVRKESANVIVALFQLNPSEFSMVLSSLPNSIQEGATRAINIEIKNPNGTGSVSTP 2439
IPG N+ R + E A+ DALKK R RY +G + ++ +S S R +++ I H D E+L+ + +++GL Q LL+S R L+ E R+ E F R FA+P+SK ++S FL+ L +F++ +K+DLQDWLF+LLT+LL+++ D+L S Q K+ + LDV RDS+P+D QF I+ ++I D+TQTP+L +K+++L+Y L MD DF NS+ TRLA++R+ITW +EPKS+DVRK + V+++LF+LN EF+M+L +LP + Q+GAT+ ++ +KN + T SV +P
Sbjct: 784 IPGSVNAMRVLSTSTDLEAAVADALKKPV---RRRYEPYGMYSDDDANSDASSVCSERSYGSRNGGIPHYLRQTEDVAEVLNHCASSNWSERKEGLLGLQNLLKS-QRTLSRVELKRLCEIFTRMFADPHSKRVFSMFLETLVDFIIIHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRDSFPFDQQFNILMRFIVDQTQTPNLKVKVAILKYIESLARQMDPTDFVNSSETRLAVSRIITWTTEPKSSDVRKAAQIVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLKNSSNT-SVGSP 1092 HSP 3 Score: 140.584 bits (353), Expect = 2.972e-33 Identity = 79/228 (34.65%), Postives = 139/228 (60.96%), Query Frame = 1
Query: 2950 NLLNEISTILSQHHRGIDSEDIKSALIELLKTMRSATNNPMLG---QKLQGLLPSVMVMLKHSEATVRCLAIRCLREICQSHPNIYRSDLQSFLMPLLETESDNTKEVSKTAEECCNLISQTIPADELLPIIAPVCGSSNFPTNSSAIKMLNMVSDSCESSVMKKHIETVVPNLLKAYDHTESMVRKAACFCLVSVHNVAGPDLVQPYFQNLAGSKIKLLNLYIRRSQ 3624
+L+ ++ LS H+ + E+ K AL+ELLK R + LG + + +L ++ L + ++R LA+R LREI ++ P +++ + +M LE D+ KEV + AEE + ++ +I ++ + ++ P+ ++++P N +AIKM V + + + + ++P LL+ YD+TES VRKA+ FCLV++++V G DL +P+ L GSK+KLLNLYI+R+Q
Sbjct: 1302 DLVADLLKELSNHNERV--EERKGALLELLKITREDS----LGVWEEHFKTILLLLLETLGDKDHSIRALALRVLREILRNQPARFKNYAELTIMKTLEAHKDSHKEVVRAAEEAASTLASSIHPEQCIKVLCPIIQTADYPINLAAIKMQTKVVERIAKESLLQLLVDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIGEDL-KPHLAQLTGSKMKLLNLYIKRAQ 1522 The following BLAST results are available for this feature:
BLAST of TCONS_00003273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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