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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003352 ID=TCONS_00003352|Name=TCONS_00003352|organism=Clytia hemisphaerica|type=transcript|length=2772bpRun BLAST on NCBI protein sequence of TCONS_00003352-protein >TCONS_00003352-protein ID=TCONS_00003352-protein|Name=TCONS_00003352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=917bp MEQHPPPNWYQRKVQLYDNHFLKLEDEENILLGTFCLDGLRTNYLLSQEERun BLAST on NCBI transcript from alignment at sc0000026:680450..691046- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003352 ID=TCONS_00003352|Name=TCONS_00003352|organism=Clytia hemisphaerica|type=transcript|length=10597bp|location=Sequence derived from alignment at sc0000026:680450..691046- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000026:680450..691046- >TCONS_00003352 ID=TCONS_00003352|Name=TCONS_00003352|organism=Clytia hemisphaerica|type=CDS|length=27510bp|location=Sequence derived from alignment at sc0000026:680450..691046- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003352 vs. Swiss-Prot (Human)
Match: SHPRH (E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2) HSP 1 Score: 372.859 bits (956), Expect = 1.245e-109 Identity = 197/490 (40.20%), Postives = 294/490 (60.00%), Query Frame = 1
Query: 1234 CICS---QAVKDERVQCNKCPNIFHLGCSGYGETALE--DYDCPHCSMK-EMVQSHCTLIVCPDTLQQQWYNEIKMHVKKDTIKYMVYEGVKIHKFLPPKVLAEYDIIITSFNTLRQDFNYV-----KADDACRRLRHRKRYAVLPCPLLAINFWRMAIDEAQMVEADNTKLAEMCLRISAVHRWCVTGTPFKRGMEDIYGLLLFLGVKPYSDKLWWHRALLDHHQSGDHLPLFDTLAKITWRSCKDDVIDQIRIPKQTEYTTWLQLSAIERHYYQKEFDYQLKQKDDALKFIPNRSVKISDLAKNELNKFLWPLLQLRQASVHPGVVTNGSVNFEKKCVSMDKVLLKLIESNKLECEEAHRKLICALNGLAGIAILKRDHEEAARLYQDAIKSW--NRTELKTDSLQKLHTLHNLMDLQETNKLSEETCQGVQWSKLLEEKNVIRNEYMANVNNKMANTNHNFKEYQGELLDAENKLEELGIDWWLEVL 2664
CIC Q + RVQC KC H C Y E L+ + CPHC + E V + TLI+ P ++ QW +EI HV+ +++ +VY+GVK FL P LAE DI+I +++ LR + NYV ++D RRLR++KRY +P PL+A+ +WR+ +DEAQMVE K AEM R+S ++RWC++GTP +RG+ED++GL++FLG++PY K WW R L + + L+ +AKI WRS K DVIDQI+IP QTE WL S +ERH+Y ++ + + L+ I + ++K+S L + + L+PLL+LRQA HP V + +K ++M+++L L + ECEEAHR+L+CALNGLAGI I+K ++ AA LY++ ++S ++ +LKTDSLQ+LH HNLM+L ++ +L EE +R YM+ N ++A Q + + + K+ WWL V+
Sbjct: 661 CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELNYVDIPHSNSEDG-RRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLIARHPG--IPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHELQRKIHS-NSPWWLNVI 1146 HSP 2 Score: 94.7449 bits (234), Expect = 1.502e-19 Identity = 55/137 (40.15%), Postives = 77/137 (56.20%), Query Frame = 1
Query: 622 VEELYKFVQEHSKDHLKDMDDFVLAKYQASNLLPTLRNYQAKAIHWMVCQEKFDHSIGNEEGMHPHWQDVTFVNGEHAYLNVYSGKLVKEFPK--PTLFPRGGILADEMGLGKTVEVLALHFNNPRPEQQKLQDKLN 1026
++ELY FV++ + + + Q L+P LR YQ +A++WM+ QE F S E +H W+++ G Y N Y+G +++E+P P L GGILADEMGLGKTVEVLAL + R Q QD L
Sbjct: 273 IDELYHFVKQTHQQETQSIQ----VDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLL--GGILADEMGLGKTVEVLALILTHTR--QDVKQDALT 401 The following BLAST results are available for this feature:
BLAST of TCONS_00003352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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