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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003353 ID=TCONS_00003353|Name=TCONS_00003353|organism=Clytia hemisphaerica|type=transcript|length=1020bp
CGcgatttcaagaatttttacgACGCTAAGAAAGGGAAGCAGAGgattgt
tttaaattttggaaattttcgtTAAGATGGTCAACATAACTTTAAGCGAA
GAACAAAAGCGAGAATACCatgattgtttttgtttgtttgagaAAAATCG
TGGTTTTATTAAGCAAGATCAAGTTCGAGATTGTTTACGTCATGTTGGTT
TCAACCCAACCGATTCACTCCTACAAAATTTACAATGGGAGCTTGATAGT
AGTGAGCAGGGTCGGTTAGGATTTAAGGAATTTCTTGAATTGATTACGAG
GCTACTGCAGGAAATGGACCAGGCTAAAGAAGcacGTGATTCGTTCAACG
CGTTCGACTTTCTTGGTGAAGGATTTGTAGCAGCCAACGATTTAAAAGAA
GCTTTGTTTTACATCATGGAGAAAGCTTCAGAAGAGGATAAACAAAATAT
CGTCAAACATTTCAAactgGAGAAAAATCGTAAAATCGAATTCGAAGAAT
TCAAGGAGATGattatcatgaaaaaataacgccCACCTCCTCCTCCCTCA
TTCAAATACGCCCTTTCACCCTGCATATCATATTTTCGCAGATTTTTAGT
ATAAAAGTGATAAAAGAACTGAAGCGTGAATGTATTCAACCATGTTGCGT
GATAAAGTCATTTTGATGTCGttggttttgaaattcttaTCAGTACGATG
GGTTCTTCCTAAAAGATTCCGACATCGGTTGAAGATATAACATTTTTCAG
GAGTTGACTCCGGATATGAGAATTCAGAACCATCCCCAGGCTAAGAACTT
TCGGACAACCAGTCTGAAATCCTTGGTTTATACTTACACAAATGATAATC
AGTCAtatgtaaatatattttttgttacCGTTTAACTGGAAATAATTATT
GTAGATTTTgtaaaattaatgttttttctgataaaTTAACATTCACAATT
TGTTAAATAAATCTATGATCCGAAACTTAAATTCTTTGAATCTACAATTT
AGAAAAGTTCATTAGGGTTA Run BLAST on NCBI transcript from alignment at sc0000026:776353..778605- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003353 ID=TCONS_00003353|Name=TCONS_00003353|organism=Clytia hemisphaerica|type=transcript|length=2253bp|location=Sequence derived from alignment at sc0000026:776353..778605- (Clytia hemisphaerica)
CGCGATTTCAAGAATTTTTACGACGCTAAGAAAGGGAAGCAGAGGATTGT
TTTAAATTTTGGAAATTTTCGTTAAGATGGTCAACATAACTTTAAGCGAA
GAACAAAAGCGAGAATACCATGATTGTTTTTGTTTGTTTGAGAAAAATCG
TGGTTTTATTAAGCAAGATCAAGTTCGAGATTGTTTACGTCATGTTGGTT
TCAACCCAACCGATTCACTCCTACAAAATTTACAATGGGAGCTTGATAGT
AGTGAGCAGGGTCGGTTAGGATTTAAGGAATTTCTTGAATTGATTACGAG
GCTACTGCAGGAAATGGACCAGGCTAAAGAAGGTTGGTTGCCAAAAAGAT
TGGGAAAAGAAAACGTAAATTTAGGATACGCTATATAATGATCTTTACCT
CAACGATTACTGCGGAAATTTTAAATCTGATATATCTGATATATCCGTTA
ATTTCTGCAATCTTTTTAATTGCGTACCTTTTTTCCCGCGCATGATTTAA
AGAAGGATATTCGTAAATCTCGAATTATGCCGGCCCCGGAACAAGCCTTA
CAGAAATCTGAGCTAAAATCTGGCCAAACTCAAGAGGATTTTCAAAAATT
GGGAAAGGCATTGTATCAAAACTTTCGCTCAGTTTGCGTTGATAATTTTA
AACATCAAGAAAATTGATACACGTGTAGATCACCTTTAATAGATGTATTA
GGGAGATGTATTAAAACGAGGAGTAATATTTACAGATTGGTTACTTTTGT
CAGATGAGTTCCTTATGATGATAAAGCCTCGTATTGGAGAAGATATAGAG
ATTACACACTTGGAACAATGAAAAACTAATCTACGTATTTTTTAGCGGGA
AAGGTTAAGTGTAGAAATATATTCTAACCTAGCCTAATTATTTTTCTTTT
TTAGCACGTGATTCGTTCAACGCGTTCGACTTTCTTGGTGAAGGATTTGT
AGCAGCCAACGATTTAAAAGAAGCTTTGTTTTACATCATGGAGAAAGCTT
CAGAAGAGGATAAACAAAATATCGTCAAACATTTCAAGTGAGTGATGGTG
TTTTTTAAACAAAACCAGTCTTCACGAAATTTGGAAAATTATTAAGTTAA
AGGTTTTGTTTTTAAATAAGAGTGAAATCGTTTGCATACTCGTCAATTTT
AATTCACAAGCTTTTTCACATTGGATTGACACGTATGTGGAGCAATATTG
ATCAGAAAGAGGAAAAGAAAAACAAATTTTTGCTTATATCAGCATATAAC
AATAGGCAGACGCACTGTCCTGATATGAAATATGTGTCTGATATAAAGCG
AGAACACTTATATGTAAAATGCCACATTCTGATTTATGGGGCAAAAGTAT
TTTAGGCTTTTCACCGACCCTTTAATCCTTAAAACACCCAGTCTCAGTAT
TGTTTTAAAATTGTTCTTATTTTTTGAAGATTTTGAGCCTCCTTGTTCTT
ATAAAGTTACTCTCATAAAAAGAGAGAGTTAATCTCATAAAAAGAGAGTT
TACGCGTATAAGAAAAATGGTGAAACCGTCTGGCTAGCAAAAATAGCTGA
TCTATCGATATTCGCTTTGAAGGCTAAGGGCGTCAGATATCATCGAAAGA
TGCACACTCGCTGAGATTTCCAATACCATATCAGGTTAGTTGCACTTTAC
ATCAGAAAGAATTTAACTTTTTAACGGTTTTTACTTTTTATTTTTTAGAC
TGGAGAAAAATCGTAAAATCGAATTCGAAGAATTCAAGGAGATGATTATC
ATGAAAAAATAACGCCCACCTCCTCCTCCCTCATTCAAATACGCCCTTTC
ACCCTGCATATCATATTTTCGCAGATTTTTAGTATAAAAGTGATAAAAGA
ACTGAAGCGTGAATGTATTCAACCATGTTGCGTGATAAAGTCATTTTGAT
GTCGTTGGTTTTGAAATTCTTATCAGTACGATGGGTTCTTCCTAAAAGAT
TCCGACATCGGTTGAAGATATAACATTTTTCAGGAGTTGACTCCGGATAT
GAGAATTCAGAACCATCCCCAGGCTAAGAACTTTCGGACAACCAGTCTGA
AATCCTTGGTTTATACTTACACAAATGATAATCAGTCATATGTAAATATA
TTTTTTGTTACCGTTTAACTGGAAATAATTATTGTAGATTTTGTAAAATT
AATGTTTTTTCTGATAAATTAACATTCACAATTTGTTAAATAAATCTATG
ATCCGAAACTTAAATTCTTTGAATCTACAATTTAGAAAAGTTCATTAGGG
TTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003353-exon-sc0000026-1575043694:778274..778605 | TCONS_00003353-exon-sc0000026-1575043694:778274..778605 | Clytia hemisphaerica | exon |
| TCONS_00003353-exon-sc0000026-1575043694:777569..777701 | TCONS_00003353-exon-sc0000026-1575043694:777569..777701 | Clytia hemisphaerica | exon |
| TCONS_00003353-exon-sc0000026-1575043694:776353..776907 | TCONS_00003353-exon-sc0000026-1575043694:776353..776907 | Clytia hemisphaerica | exon |
| TCONS_00003353-exon-sc0000026-1510915933:778274..778605 | TCONS_00003353-exon-sc0000026-1510915933:778274..778605 | Clytia hemisphaerica | exon |
| TCONS_00003353-exon-sc0000026-1510915933:777569..777701 | TCONS_00003353-exon-sc0000026-1510915933:777569..777701 | Clytia hemisphaerica | exon |
| TCONS_00003353-exon-sc0000026-1510915933:776353..776907 | TCONS_00003353-exon-sc0000026-1510915933:776353..776907 | Clytia hemisphaerica | exon |
| TCONS_00003353-exon-sc0000026-1491911889:778274..778605 | TCONS_00003353-exon-sc0000026-1491911889:778274..778605 | Clytia hemisphaerica | exon |
| TCONS_00003353-exon-sc0000026-1491911889:777569..777701 | TCONS_00003353-exon-sc0000026-1491911889:777569..777701 | Clytia hemisphaerica | exon |
| TCONS_00003353-exon-sc0000026-1491911889:776353..776907 | TCONS_00003353-exon-sc0000026-1491911889:776353..776907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:776353..778605 - |
Blast
BLAST of TCONS_00003353 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 8.923e-18 Identity = 39/130 (30.00%), Postives = 79/130 (60.77%), Query Frame = 2
Query: 92 LSEEQKREYHDCFCLFEKNR-GFIKQDQVRDCLRHVGFNPTDSLLQNLQWELDSSEQGRLGFKEFLELITRLLQEMDQAKEARDSFNAFDFLGEGFVAANDLKEALFYIMEKASEEDKQNIVKHFKLEKN 478
L+EEQ E+ + F LF+K+ G I ++ +R +G NPT++ LQ++ E+D+ G + F EFL ++ R +++ D +E R++F FD G G+++A +L+ + + EK ++E+ +++ ++ +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD 134
The following BLAST results are available for this feature:
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