|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003366 ID=TCONS_00003366|Name=TCONS_00003366|organism=Clytia hemisphaerica|type=transcript|length=1923bp
CGGAACTATGGCGCAAAAGTGAAagcgttctgtaaaatacatcgcGGACT
TACGCCTCTTCTTGATCCCTTTTCACCTGTACATAGTTTGTTTTCCGTGA
GGTTTCTGTTATGCACAAAACTGTACATGCtcgaaaatcaaaacaaacat
ggcgTCACAAAAAGTAGTTGTGCTGGAAGCATTTCTCAAGGACGTATATG
CTAACACGAAGAAGAATCTCTCTAAGAAGTTGAGAGACAATAACACCATT
AAGTCAAACGCAGCCAACCCATATGATCGGGTTGTATTTTGTTGGATTTT
CGAACGACTCTTCTTCTTAAATACTGATGACACTACTCCTCGAACTCGTC
ACCACNCATTAAGTCAAACGCAGCCAACCCATATGATCGGGTTGTAGTTA
TTGGAAAGGTTCATATTTGGATTTTCGAACGACTCTTCTTCTTAAATACT
GATGACACTACTCCTCGTCACCACCACCTGCATGCTGATGCTACTACTAC
AACAACTGCAACCAAAGTATTAAACATTCCTCGTAACAGTAATTTCATGG
TGAATTCTATAACAGATCTTCAGAAATATTTTCCGATAGAATCGATATTG
AAATTCCATTCGTCTGGAGATGTGACTTTAATTACGCCGTGGATGAAGCT
AGCAGCCGACATGGGTTTGAAATTTCTGGATGGATCACACGGCACATTTG
AAGAGGGATACTTAGTTATTCCATTAATGGAGATCCCTGAAAGCAATGAT
GTAATGATCTTTGTACTATCGAATGGGTTTGACTTTAACGATGAAATCCC
AGAATGGCTCAAGGATAACACTCTTGGtaacttgtttttaaaatgCGACC
CAACAATTATGAGAAGAACACCTGGAATAGGAACAGTTACTATATCTGTC
AAGGACCAGGATGAGCAGCCATTGAATTGTGCCGATTTTCTCAAAGTACG
CTCTGAATACCTTCAAATTCTTGGCTTTTTCCGCGCATACGACCAACCAA
ACTTTAATTCTGTTCGGTTCAGTAAACCAATTCAGAAAAATGCAAACAAT
GCCCTCTACGAAGTAATCCATCAACCGTGTTTTAAAGGGAACATTGCAAG
AATTTCTAGTAATGGATTAAATGTGCACCACAGTGTCACAGTCAATTTTG
ACAAAGTTGACGAGAACAAATTTGGAACCTTAAACATTCAATTTAAAAAT
GCGTGCTTTAATTTTCTTGGTTTTCTAACTCATGAAGTTGCTGTTTAGTA
ATATTTATGACATGCTATTTATGATATTCATAGTATTATTGTGGTGGCAA
AATGTTAGATGTGCTACAGTACCGTAAACAGCCATAACTTGCAACACGGA
CTTAACtgtttttaaattatttgaatGCGTTGATTTTGCTTCAACCTCTG
GAATACTATTTTGAACAttccttgaaaaaaaagaacgaaaacgTAGCAAT
CTGAGGAGAAAACGTCTGTGTTGCAAGTTGTTGCCGTTCACGTTATTTTA
TTGAAATCAGAGTTTGTGAAAAAACACTTGTTACTTGTGACTTTTAAGGA
ACATGATGATTTAACACTGTGNTTTTGAACAttccttgaaaaaaaagaac
gaaaacgTAGCAATCTGAGGAGAAAACGTCTGTGTTGCAAGTTGTTGCCG
TTCACGTTATTTTATTGAAATCAGAGTTTGTGAAAAAACACTTGTTACTT
GTGACTTTTAAGGAACATGATGATTTAACATTAAGCTTTTTTCCACCAAT
AATCATGGCTGTcaaatcaatttttcaataactGCTATATATATGATAGG
GAAAAATAGTACAGAATTATCATGAATATCTAGATGTATAgatgtgtttt
tattttgttggtttttaagttcttatattttttatcattttagttTATTG
CAAGTTTGGCAGGTAGTTAGAGC Run BLAST on NCBI protein sequence of TCONS_00003366-protein >TCONS_00003366-protein ID=TCONS_00003366-protein|Name=TCONS_00003366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MVNSITDLQKYFPIESILKFHSSGDVTLITPWMKLAADMGLKFLDGSHGT
FEEGYLVIPLMEIPESNDVMIFVLSNGFDFNDEIPEWLKDNTLGNLFLKC
DPTIMRRTPGIGTVTISVKDQDEQPLNCADFLKVRSEYLQILGFFRAYDQ
PNFNSVRFSKPIQKNANNALYEVIHQPCFKGNIARISSNGLNVHHSVTVN
FDKVDENKFGTLNIQFKNACFNFLGFLTHEVAV Run BLAST on NCBI transcript from alignment at sc0000026:76516..78438 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003366 ID=TCONS_00003366|Name=TCONS_00003366|organism=Clytia hemisphaerica|type=transcript|length=1923bp|location=Sequence derived from alignment at sc0000026:76516..78438 (Clytia hemisphaerica)
GCTCTAACTACCTGCCAAACTTGCAATAaactaaaatgataaaaaatata
agaacttaaaaaccaacaaaataaaaacacatcTATACATCTAGATATTC
ATGATAATTCTGTACTATTTTTCCCTATCATATATATAGCagttattgaa
aaattgatttgACAGCCATGATTATTGGTGGAAAAAAGCTTAATGTTAAA
TCATCATGTTCCTTAAAAGTCACAAGTAACAAGTGTTTTTTCACAAACTC
TGATTTCAATAAAATAACGTGAACGGCAACAACTTGCAACACAGACGTTT
TCTCCTCAGATTGCTAcgttttcgttcttttttttcaaggaaTGTTCAAA
ANCACAGTGTTAAATCATCATGTTCCTTAAAAGTCACAAGTAACAAGTGT
TTTTTCACAAACTCTGATTTCAATAAAATAACGTGAACGGCAACAACTTG
CAACACAGACGTTTTCTCCTCAGATTGCTAcgttttcgttcttttttttc
aaggaaTGTTCAAAATAGTATTCCAGAGGTTGAAGCAAAATCAACGCatt
caaataatttaaaaacaGTTAAGTCCGTGTTGCAAGTTATGGCTGTTTAC
GGTACTGTAGCACATCTAACATTTTGCCACCACAATAATACTATGAATAT
CATAAATAGCATGTCATAAATATTACTAAACAGCAACTTCATGAGTTAGA
AAACCAAGAAAATTAAAGCACGCATTTTTAAATTGAATGTTTAAGGTTCC
AAATTTGTTCTCGTCAACTTTGTCAAAATTGACTGTGACACTGTGGTGCA
CATTTAATCCATTACTAGAAATTCTTGCAATGTTCCCTTTAAAACACGGT
TGATGGATTACTTCGTAGAGGGCATTGTTTGCATTTTTCTGAATTGGTTT
ACTGAACCGAACAGAATTAAAGTTTGGTTGGTCGTATGCGCGGAAAAAGC
CAAGAATTTGAAGGTATTCAGAGCGTACTTTGAGAAAATCGGCACAATTC
AATGGCTGCTCATCCTGGTCCTTGACAGATATAGTAACTGTTCCTATTCC
AGGTGTTCTTCTCATAATTGTTGGGTCGcattttaaaaacaagttaCCAA
GAGTGTTATCCTTGAGCCATTCTGGGATTTCATCGTTAAAGTCAAACCCA
TTCGATAGTACAAAGATCATTACATCATTGCTTTCAGGGATCTCCATTAA
TGGAATAACTAAGTATCCCTCTTCAAATGTGCCGTGTGATCCATCCAGAA
ATTTCAAACCCATGTCGGCTGCTAGCTTCATCCACGGCGTAATTAAAGTC
ACATCTCCAGACGAATGGAATTTCAATATCGATTCTATCGGAAAATATTT
CTGAAGATCTGTTATAGAATTCACCATGAAATTACTGTTACGAGGAATGT
TTAATACTTTGGTTGCAGTTGTTGTAGTAGTAGCATCAGCATGCAGGTGG
TGGTGACGAGGAGTAGTGTCATCAGTATTTAAGAAGAAGAGTCGTTCGAA
AATCCAAATATGAACCTTTCCAATAACTACAACCCGATCATATGGGTTGG
CTGCGTTTGACTTAATGNGTGGTGACGAGTTCGAGGAGTAGTGTCATCAG
TATTTAAGAAGAAGAGTCGTTCGAAAATCCAACAAAATACAACCCGATCA
TATGGGTTGGCTGCGTTTGACTTAATGGTGTTATTGTCTCTCAACTTCTT
AGAGAGATTCTTCTTCGTGTTAGCATATACGTCCTTGAGAAATGCTTCCA
GCACAACTACTTTTTGTGAcgccatgtttgttttgattttcgaGCATGTA
CAGTTTTGTGCATAACAGAAACCTCACGGAAAACAAACTATGTACAGGTG
AAAAGGGATCAAGAAGAGGCGTAAGTCCgcgatgtattttacagaacgct
TTCACTTTTGCGCCATAGTTCCG Coding sequence (CDS) from alignment at sc0000026:76516..78438 >TCONS_00003366 ID=TCONS_00003366|Name=TCONS_00003366|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000026:76516..78438 (Clytia hemisphaerica)
CTAAACAGCAACTTCATGAGTTAGAAAACCAAGAAAATTAAAGCACGCAT
TTTTAAATTGAATGTTTAAGGTTCCAAATTTGTTCTCGTCAACTTTGTCA
AAATTGACTGTGACACTGTGGTGCACATTTAATCCATTACTAGAAATTCT
TGCAATGTTCCCTTTAAAACACGGTTGATGGATTACTTCGTAGAGGGCAT
TGTTTGCATTTTTCTGAATTGGTTTACTGAACCGAACAGAATTAAAGTTT
GGTTGGTCGTATGCGCGGAAAAAGCCAAGAATTTGAAGGTATTCAGAGCG
TACTTTGAGAAAATCGGCACAATTCAATGGCTGCTCATCCTGGTCCTTGA
CAGATATAGTAACTGTTCCTATTCCAGGTGTTCTTCTCATAATTGTTGGG
TCGcattttaaaaacaagttaCCAAGAGTGTTATCCTTGAGCCATTCTGG
GATTTCATCGTTAAAGTCAAACCCATTCGATAGTACAAAGATCATTACAT
CATTGCTTTCAGGGATCTCCATTAATGGAATAACTAAGTATCCCTCTTCA
AATGTGCCGTGTGATCCATCCAGAAATTTCAAACCCATGTCGGCTGCTAG
CTTCATCCACGGCGTAATTAAAGTCACATCTCCAGACGAATGGAATTTCA
ATATCGATTCTATCGGAAAATATTTCTGAAGATCTGTTATAGAATTCACC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003366-exon-sc0000026-1491911889:76516..78438 | TCONS_00003366-exon-sc0000026-1491911889:76516..78438 | Clytia hemisphaerica | exon |
| TCONS_00003366-exon-sc0000026-1510915933:76516..78438 | TCONS_00003366-exon-sc0000026-1510915933:76516..78438 | Clytia hemisphaerica | exon |
| TCONS_00003366-exon-sc0000026-1575043694:76516..78438 | TCONS_00003366-exon-sc0000026-1575043694:76516..78438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:76516..78438 . |
Blast
The following BLAST results are available for this feature:
|
