TCONS_00003368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003368
Unique NameTCONS_00003368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003368 ID=TCONS_00003368|Name=TCONS_00003368|organism=Clytia hemisphaerica|type=transcript|length=358bp
GTCTTGTTCTAAGACTTTGACTAGTGTCTTGTGTGGACGACCTCTCTTCT
TTGTTAAGAATGTTGGCTGCCAAAGGAGAAGTTTAGATGCCGGCTCATTT
CCTCTGATGACGCGACCTGCTAACTGCAATCTTCTTTTCTGGATAAGACT
GCTCAATCGGTGCAGCTTGCCGTACAACACTTTGTTAGTAATGTGGACAT
TGGGCTGgatgttttttacttttctcaGCATTCTCGTATACGCTCCGTCT
AGTTTCTTTGTCAGAATAGACGTTAGTGACCATGATCCACAGGAGTATAG
GAGGATGGACTCGACAGTGGACCTGAAGAGTTGCACTTTTATACTGAGTG
AAGCTTCT
Run BLAST on NCBI

protein sequence of TCONS_00003368-protein

>TCONS_00003368-protein ID=TCONS_00003368-protein|Name=TCONS_00003368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
EASLSIKVQLFRSTVESILLYSCGSWSLTSILTKKLDGAYTRMLRKVKNI
QPNVHITNKVLYGKLHRLSSLIQKRRLQLAGRVIRGNEPASKLLLWQPTF
LTKKRGRPHKTLVKVLEQD
Run BLAST on NCBI

transcript from alignment at sc0000026:92403..92760

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003368 ID=TCONS_00003368|Name=TCONS_00003368|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at sc0000026:92403..92760 (Clytia hemisphaerica)
AGAAGCTTCACTCAGTATAAAAGTGCAACTCTTCAGGTCCACTGTCGAGT
CCATCCTCCTATACTCCTGTGGATCATGGTCACTAACGTCTATTCTGACA
AAGAAACTAGACGGAGCGTATACGAGAATGCtgagaaaagtaaaaaacat
cCAGCCCAATGTCCACATTACTAACAAAGTGTTGTACGGCAAGCTGCACC
GATTGAGCAGTCTTATCCAGAAAAGAAGATTGCAGTTAGCAGGTCGCGTC
ATCAGAGGAAATGAGCCGGCATCTAAACTTCTCCTTTGGCAGCCAACATT
CTTAACAAAGAAGAGAGGTCGTCCACACAAGACACTAGTCAAAGTCTTAG
AACAAGAC

Coding sequence (CDS) from alignment at sc0000026:92403..92760

>TCONS_00003368 ID=TCONS_00003368|Name=TCONS_00003368|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000026:92403..92760 (Clytia hemisphaerica)
GAAGCTTCACTCAGTATAAAAGTGCAACTCTTCAGGTCCACTGTCGAGTC
CATCCTCCTATACTCCTGTGGATCATGGTCACTAACGTCTATTCTGACAA
AGAAACTAGACGGAGCGTATACGAGAATGCtgagaaaagtaaaaaacatc
CAGCCCAATGTCCACATTACTAACAAAGTGTTGTACGGCAAGCTGCACCG
ATTGAGCAGTCTTATCCAGAAAAGAAGATTGCAGTTAGCAGGTCGCGTCA
TCAGAGGAAATGAGCCGGCATCTAAACTTCTCCTTTGGCAGCCAACATTC
TTAACAAAGAAGAGAGGTCGTCCACACAAGACACTAGTCAAAGTCTTAGA
ACAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001863XLOC_001863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003368-exon-sc0000026-1491911889:92403..92760TCONS_00003368-exon-sc0000026-1491911889:92403..92760Clytia hemisphaericaexon
TCONS_00003368-exon-sc0000026-1510915933:92403..92760TCONS_00003368-exon-sc0000026-1510915933:92403..92760Clytia hemisphaericaexon
TCONS_00003368-exon-sc0000026-1575043694:92403..92760TCONS_00003368-exon-sc0000026-1575043694:92403..92760Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003368-proteinTCONS_00003368-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:92403..92760 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23734	1.35387	0	0	2.45068	1.78808	2.23315	4.1187	1.06343	0.497067	0.964931	1.05279	0.364357	0.891942	1.41501	0.176396	0.459095	0.437672	0	0.517586	0.646544	0.825807	0	0	6.93827	3.9995	0	0.559727	1.05711	0.374016
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top