TCONS_00003369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003369
Unique NameTCONS_00003369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003369 ID=TCONS_00003369|Name=TCONS_00003369|organism=Clytia hemisphaerica|type=transcript|length=481bp
ccataaaattatcattagTTTTGTTCTCAGCATGTAAGGCAAAGATAATT
ATTCTAATGTTACattaataaaatcaagcaaCCTGGATGTGTGAAATGGT
TTGGTTTAAGTGCAGCTTTGGTTTAGGGTCAGACTTTGAAATAGTATGTT
TTTGATATGTAAAATACAGTAAAGCTGTATggaaataatgtgtatttttg
ATACCGAAACATTACGTCATNCTTGAAGTGATAATCGTAATATCCATAAT
CAAAAGAACAAATGAATAAGGTGGACTAAAGTCACAGTTCAAACGACTCA
ATATCGATCATTGAAATTCCACCAGAATCTCTACGATAAAGAGGGATATT
ACGACTATCCAAAATTTTATCATACACAAAGAAACTGCTAAAACCAAACA
CACCCTATTAAAGAAATcccaaaaaataaagataaaacgaGACTTCACCG
ATGAAAATTGACGTATTTACAAAACTCCANN
Run BLAST on NCBI

transcript from alignment at sc0000026:115976..116456

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003369 ID=TCONS_00003369|Name=TCONS_00003369|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at sc0000026:115976..116456 (Clytia hemisphaerica)
NNTGGAGTTTTGTAAATACGTCAATTTTCATCGGTGAAGTCtcgttttat
ctttattttttgggATTTCTTTAATAGGGTGTGTTTGGTTTTAGCAGTTT
CTTTGTGTATGATAAAATTTTGGATAGTCGTAATATCCCTCTTTATCGTA
GAGATTCTGGTGGAATTTCAATGATCGATATTGAGTCGTTTGAACTGTGA
CTTTAGTCCACCTTATTCATTTGTTCTTTTGATTATGGATATTACGATTA
TCACTTCAAGNATGACGTAATGTTTCGGTATcaaaaatacacattatttc
cATACAGCTTTACTGTATTTTACATATCAAAAACATACTATTTCAAAGTC
TGACCCTAAACCAAAGCTGCACTTAAACCAAACCATTTCACACATCCAGG
ttgcttgattttattaatGTAACATTAGAATAATTATCTTTGCCTTACAT
GCTGAGAACAAAActaatgataattttatgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001864XLOC_001864Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003369-exon-sc0000026-1491911889:115976..116456TCONS_00003369-exon-sc0000026-1491911889:115976..116456Clytia hemisphaericaexon
TCONS_00003369-exon-sc0000026-1510915933:115976..116456TCONS_00003369-exon-sc0000026-1510915933:115976..116456Clytia hemisphaericaexon
TCONS_00003369-exon-sc0000026-1575043694:115976..116456TCONS_00003369-exon-sc0000026-1575043694:115976..116456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:115976..116456 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.27943	0	0	0	162.233	92.4924	76.1565	84.7668	17.63	11.5536	7.89359	8.32289	1.73759	0.979281	0.169481	0.476893	1.32462	1.32431	0.554612	0.435271	0.465322	0.722685	0.747759	0	0.826799	2.91631	0.258583	0.790689	1.28626	0.294996
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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