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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003413 ID=TCONS_00003413|Name=TCONS_00003413|organism=Clytia hemisphaerica|type=transcript|length=4407bpRun BLAST on NCBI protein sequence of TCONS_00003413-protein >TCONS_00003413-protein ID=TCONS_00003413-protein|Name=TCONS_00003413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=836bp MLFMKLLLPLFALNLPIANGAEDFYNLLGVSKDATKAQIRRAFKKIAIEKRun BLAST on NCBI transcript from alignment at sc0000028:223032..254184+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003413 ID=TCONS_00003413|Name=TCONS_00003413|organism=Clytia hemisphaerica|type=transcript|length=31153bp|location=Sequence derived from alignment at sc0000028:223032..254184+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:223032..254184+ >TCONS_00003413 ID=TCONS_00003413|Name=TCONS_00003413|organism=Clytia hemisphaerica|type=CDS|length=52731bp|location=Sequence derived from alignment at sc0000028:223032..254184+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003413 vs. Swiss-Prot (Human)
Match: DJC10 (DnaJ homolog subfamily C member 10 OS=Homo sapiens GN=DNAJC10 PE=1 SV=2) HSP 1 Score: 586.645 bits (1511), Expect = 0.000e+0 Identity = 306/731 (41.86%), Postives = 441/731 (60.33%), Query Frame = 3
Query: 171 EDFYNLLGVSKDATKAQIRRAFKKIAIEKHPDKNPNDPGAHETFTKINRAYETLKDDDLRKKYDTYGEEGLKDDHFSNQYQSWNFYNEQFGIYDDDPEIITLSKADFEQSVSGTEDVWFINFYSPHCSHCHTLAPVWREVARELNGVIRMGAVNCHDDWMLCRMQGINGYPSLRIYPTXXXXXXX---XXXXXMISHIMSNLEVDVIDL-TLTMIKEVMPT--SERPWLIAFCDDETLIHCMEDGMLIKLSAMLENLVHVARANCLNDVKLCMAFDTSTSLRLVKIKDQKFQPAVLI--PATNAIDIXXXXXXXXXXXXTV-NDEMFQGIRRKVAEGE--EESWLLIF----REDFDDKDLELRKMAGLLPYQKIGQVNCKDEHDLCSRFYLSKFPTVLFYKSIG---YEVHHGRYNAHDITNFVRESDLSNVRVLHPENFPNLKEIKDNWFIDFFAPWCPPCMKLLPEWRKAGKQIGDSIAKFGTVDCTIHKDLCLKQNVRSYPTTIFFNKTEEAHIYSGYHSAEDIIAFAEDILKPPVIVLTPESFEKSINQKELGETWVVDFYAPWCGPCMELAPTYRQLAKRLYGEATLATIDCQKYSYFCNTQNINTYPTIRLYSYQSKDASHYARHQGW-RDLESLYTWVFQHFPSLVAEADYQTFYDEILNSNDAYLIDFYTSWCGHCHTFAPHYSKLAKRLEGRVKAVKINCETEYVVCRSVGVRSYPTVVFF 2306
+DFY+LLGVSK A+ +IR+AFKK+A++ HPDKNPN+P AH F KINRAYE LKD+DLRKKYD YGE+GL+D+ QY+SWN+Y FGIYDDDPEIITL + +F+ +V+ E +WF+NFYSP CSHCH LAP WR+ A+E++G++R+GAVNC DD MLCRM+G+N YPSL I+ +G KE ++S M ++ V +L T + + + WLI FC C+ ++LS ML+ LV+V +C LC + D +TS F P + N+I L + + N F+ + E WLL F E+ +D +L+ K + ++G+ +C D+CS Y+ + P++ +K G YE+HHG+ +DI F +ES S+V L P+NFP K+ W +DFFAPWCPPC LLPE R+A + + KFGT+DCT+H+ LC N+++YPTT+ FN++ H Y G+HSAE I+ F ED++ P V+ LTP +F + + Q++ E W+VDFY+PWC PC L P ++++A+ L G + +IDCQ+Y FC +N+ YP IR + +S A HY + GW RD SL W P + + QTF +++L + ++IDFY WCG C FAP + LA+ ++G+VKA K++C+ C+ G+R+YPTV F+
Sbjct: 34 QDFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQ-GGQYESWNYYRYDFGIYDDDPEIITLERREFDAAVNSGE-LWFVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAPVKYHGDRSKESLVSFAMQHVRSTVTELWTGNFVNSIQTAFAAGIGWLITFCSKGG--DCLTSQTRLRLSGMLDGLVNVGWMDCATQDNLCKSLDITTSTTAY------FPPGATLNNKEKNSILFLNSLDAKEIYLEVIHNLPDFELLSANTLEDRLAHHRWLLFFHFGKNENSNDPELKKLKTLLKNDHIQVGRFDCSSAPDICSNLYVFQ-PSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQNFP--ANDKEPWLVDFFAPWCPPCRALLPELRRASNLLYGQL-KFGTLDCTVHEGLCNMYNIQAYPTTVVFNQSN-IHEYEGHHSAEQILEFIEDLMNPSVVSLTPTTFNELVTQRKHNEVWMVDFYSPWCHPCQVLMPEWKRMARTLTGLINVGSIDCQQYHSFCAQENVQRYPEIRFFPPKSNKAYHYHSYNGWNRDAYSLRIWGLGFLPQVSTDLTPQTFSEKVLQGKNHWVIDFYAPWCGPCQNFAPEFELLARMIKGKVKAGKVDCQAYAQTCQKAGIRAYPTVKFY 749 HSP 2 Score: 169.474 bits (428), Expect = 7.782e-43 Identity = 87/297 (29.29%), Postives = 148/297 (49.83%), Query Frame = 3
Query: 1209 ELRKMAGLLPYQ-KIGQVNCKDEHDLCSRFYLSKFPTVLFYKSIGYEVHHGRYNAHDITNFVRESDLSNVRVLHPENFPNL---KEIKDNWFIDFFAPWCPPCMKLLPEWRKAGKQIGDSIAKFGTVDCTIHKDLCLKQNVRSYPTTIFF----NKTEEAHIYSGYH-SAEDIIAFAEDILKPPVIVLTPESFEKSINQKELGETWVVDFYAPWCGPCMELAPTYRQLAKRLYGEATLATIDCQKYSYFCNTQNINTYPTIRLYSYQSKDASHYARHQGWRDLESLYTWVFQHFPSL 2072
ELR+ + LL Q K G ++C LC+ + + +PT + + + G ++A I F+ + +V L P F L ++ + W +DF++PWC PC L+PEW++ + + + G++DC + C ++NV+ YP FF NK H Y+G++ A + + L LTP++F + + Q + WV+DFYAPWCGPC AP + LA+ + G+ +DCQ Y+ C I YPT++ Y Y+ + RD +++ + + +L
Sbjct: 489 ELRRASNLLYGQLKFGTLDCTVHEGLCNMYNIQAYPTTVVFNQSNIHEYEGHHSAEQILEFIEDLMNPSVVSLTPTTFNELVTQRKHNEVWMVDFYSPWCHPCQVLMPEWKRMARTL-TGLINVGSIDCQQYHSFCAQENVQRYPEIRFFPPKSNKAYHYHSYNGWNRDAYSLRIWGLGFLPQVSTDLTPQTFSEKVLQGK--NHWVIDFYAPWCGPCQNFAPEFELLARMIKGKVKAGKVDCQAYAQTCQKAGIRAYPTVKFYFYERAKRNFQEEQINTRDAKAIAALISEKLETL 782 HSP 3 Score: 137.887 bits (346), Expect = 8.448e-33 Identity = 108/403 (26.80%), Postives = 179/403 (44.42%), Query Frame = 3
Query: 1164 SWLLIFREDFDD---KDLELRKMAGLLPYQKIGQVNCKDEHDLCSRFYLSKFPTVLFYKSIGYEVHHGRYNAHDITNFVRESDLSNVRVLHPENFPNLKEIKDNWFIDFFA--PWCPPCMKLL------------PEWRKAGKQIGDSIAKFGTVDCTIHKDLCLKQNVRSYPTTIFFNK-TEEAHIYSGYHSAEDIIAFAEDILKPPVIVLTPESFEKSINQKELGETWVVDFYAPWCGPCMELAPTYRQLAKRLYGEATLATIDCQKYSYFCNTQNINTYPTIRLYSYQSKDASHYARHQGWRDLESLYTWVFQHFPSLVAEADYQTFYDEILNS---NDAYLIDFYTSWCGHCHTFAPHYSKLAKRLEGRVKAVKINCETEYVVCRSVGVRSYPTVVFFP 2309
WL+ F D LR L +G ++C + +LC ++ T F G +++ N+ N + ++ + V+H N P+ + + N D A W LL PE +K + + + G DC+ D+C V +F + T+E I+ G DI+AFA++ + V L P++F N KE W+VDF+APWC PC L P R+ + LYG+ T+DC + CN NI YPT +++ QS + H + LE + + PS+V+ T ++E++ N+ +++DFY+ WC C P + ++A+ L G + I+C+ + C V+ YP + FFP
Sbjct: 258 GWLITFCSKGGDCLTSQTRLRLSGMLDGLVNVGWMDCATQDNLCKSLDITTSTTAYF--PPGATLNNKEKNSILFLNSLDAKEIY-LEVIH--NLPDFELLSANTLEDRLAHHRW------LLFFHFGKNENSNDPELKKLKTLLKNDHIQVGRFDCSSAPDICSNLYVFQPSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQNF--PANDKE---PWLVDFFAPWCPPCRALLPELRRASNLLYGQLKFGTLDCTVHEGLCNMYNIQAYPTTVVFN-QSNIHEYEGHHSAEQILEFIEDLMN---PSVVSLT--PTTFNELVTQRKHNEVWMVDFYSPWCHPCQVLMPEWKRMARTLTGLINVGSIDCQQYHSFCAQENVQRYPEIRFFP 638 HSP 4 Score: 98.9821 bits (245), Expect = 8.716e-21 Identity = 69/233 (29.61%), Postives = 113/233 (48.50%), Query Frame = 3
Query: 1728 PPVIVLTPESFEKSINQKELGETWVVDFYAPWCGPCMELAPTYRQLAKRLYGEATLATIDCQKYSYFCNTQNINTYPTIRLYSYQSKDASHYARHQGWRDLESLYTWVFQHFPSLVAEADYQTFYDEILNSNDA---YLIDFYTSWCGHCHTFAPHYSKLAKRLEGRVKAVKINCETEYVVCRSVGVRSYPTVVFFPGVLYKGMSQAVTGVHLNSLDTGYLHDTALHMLANHQ 2417
P +I L F+ ++N GE W V+FY+P C C +LAPT+R AK + G + ++C C + +N+YP+ L+ ++S A ++ G R ESL ++ QH S V E F + I + A +LI F S G C T +L+ L+G V ++C T+ +C+S+ + + T F PG + + LNSLD ++ +H L + +
Sbjct: 129 PEIITLERREFDAAVNS---GELWFVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPS--LFIFRSGMAP--VKYHGDRSKESLVSFAMQHVRSTVTELWTGNFVNSIQTAFAAGIGWLITF-CSKGGDCLTSQTRL-RLSGMLDGLVNVGWMDCATQDNLCKSLDITTSTTAYFPPGATLNNKEKNSI-LFLNSLDAKEIYLEVIHNLPDFE 351 The following BLAST results are available for this feature:
BLAST of TCONS_00003413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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