TCONS_00003468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003468
Unique NameTCONS_00003468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003468 ID=TCONS_00003468|Name=TCONS_00003468|organism=Clytia hemisphaerica|type=transcript|length=659bp
ctCATGTCGAGAAAAGGTAAACAAAATGACGGAACATATTCTTTCTGATA
AACCTTCATTTGATTTTCTTGATGAAGATATGGTTTGAAGATACAACACT
ATTTCTACAAAGACATGAAAATAGACGGTGGAGctACAGTTGATGATGTA
AACGTAAACATGCCAGATACCGAGTCAACAATTGCTAAAGAATTGGCACC
TGCCGTTGCTATGGCAACTCTCATCGTATCATTAGGCCCTTTACTCACTA
AAACGTATTTTTGGTGGTTTATTGGTTTGACAACGTTACTAATTATTGGA
CTTGAGATATACCAAAAGTGGAAGAAAAAACAAGATCCagttcaaaaaac
aatgaaaattatccgtCACAACCATCATCAATTTAAAACCATTGGTAGAG
TCGTACAAGCTCATTCTCCTCNaaaaaacaatgaaaattatccgtCACAA
CCATCATCAATTTAAAACCATTGGTAGAGTCGTACAAGCTCATTCTCCTC
aaccaaaaaagaaagaagacaTCAAAAAAGGAAGTTCAAGTCCCATCTTT
AGTCCCAAAATGTTGAAAAGGAAACTTGTAAAGTGGATGAACGTGAATAA
GATTTGACAGAATAATGTTTAGGGTTACAGTAttacaaccccttctcaca
gacccggtg
Run BLAST on NCBI

protein sequence of TCONS_00003468-protein

>TCONS_00003468-protein ID=TCONS_00003468-protein|Name=TCONS_00003468-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MKIDGGATVDDVNVNMPDTESTIAKELAPAVAMATLIVSLGPLLTKTYFW
WFIGLTTLLIIGLEIYQKWKKKQDPVQKTMKIIRHNHHQFKTIGRVVQAH
SPXKNNENYPSQPSSI
Run BLAST on NCBI

transcript from alignment at sc0000028:907694..912055+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003468 ID=TCONS_00003468|Name=TCONS_00003468|organism=Clytia hemisphaerica|type=transcript|length=4362bp|location=Sequence derived from alignment at sc0000028:907694..912055+ (Clytia hemisphaerica)
ctCATGTCGAGAAAAGGTAAACAAAATGACGGAACATATTCTTTCTGATA
AACCTTCATTTGATTTTCTTGATGAAGATATGGTTTGAAGATACAACACT
ATTTCTACAAAGACATGAAAATAGACGGTGGAGGTAAGGTGCATTGTTAC
TATAAAATATACGGCACAAAAGAATAATACGAATTAGTCTCCCTTTTGTC
ATGCTAGtcagaaaatctttaaaatcacATTCTTCCAGATCTTCCAATCT
TTTACCTGTTTAACTTTCAGAAAGTGTGTATAAAGTCATAGTCAAGACTT
TGATTCGAAAACTATTTAGATTAGCTGGAGTGAACTAAACCCATTGATAA
GTAAATAAAGCCACGTGTTACCCAATTAGACGCCACGTAATTCCATAAGT
GATGAAGTTTTGATAAAACAGGGTTCCCACAGCTTTCAAAATTCCAAATT
TAAGGAAAATTGAGGAGAATTAAGGaggattttttacttttttgaggaga
tttctgtaaaaatttgaggagtttttcatatatttttagaaaaattgagg
AGATTTTCTTGACAGTAAACTTGTCAAGTTAAAATGatgttttttgttgt
taaaaaagCAACACTGTACTAGGTAATGTTTTGCATCGACATCGGAGGAT
CGACACATGCAGGGGTGGCTCTTCCCGAAAGTGATCTTTAAAGATGCACA
AAAGATTGTCTCCTTTATTGTAAAAATGAGCTTTTTACGAACTAAACAAA
GGAAAGTCTCCTTCTTGGGGGAGCAGTGGCTCTAAGTGTAAAACTACAAA
GACCTGACAAGATACATAGCGGCAATAGTCTATGTTTGAAATAACGCTCT
TAATTTTCCAGAGTGGCACACCCCCCCCCAGAGTCAAATTTGAGATttac
taaataaaaaagaaactcaaagaattttttgtgtaatgcgagcgaagcga
gcgtaaaaaatgagattttatgttttaagggctctgaccatagttagaaa
attgattttagtatctgaacataaaagttatgttttagattttttaacac
ttttaataaagatttgcctttataaattgctttttaatcaaaccccttaa
gagtaattaagaacttaattgcaaaaatgacgttatgaactttaaaaaga
cgttaataatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcttcgccgaaacta
agctcttcaaagttgaaatactcttcctcgaaaaagtcttcattttcttc
ttcatcaaatttttccaatgcaatttttgaattttcggaTTCAGGAGTAG
TTTGTCtaacaaaaaatgtataacatgtcatagAAACAcatcaattatga
aaaattcactatggtcagagcccttaaataatATTGTCGTAAGCAAATTG
GTCTTGAGGCACAGTTAGGTTTTCAATCGATAAAGCTACAACATTTTTTT
GTCTTGTCtaggtaaaaatataaaatgttaGCAAGGTTTCAAAGAAATTA
CCAAACAACTACAATCATTTCCAAAtaacttggcacaaaagggaaattcc
ccacgaaattttacaaccacaaataatttgtaagtgctctaaattaggtt
ggaaagGTAGAGTTGTAACTCTAAGTTTATAACGctttaagacttaggac
cttaggatctgacgatccaaaagttcaaaaatagtccggtagggcttgaa
atatagcctagaaaccaataactCCCTCCGAGATCGAAATATtcgttgaa
atcaagttgaaggcccgaaacTGACATTCTCACtcgaactattttcaaaa
aaatggttaaatagccaaaatgttatggcactgattgtagattgcGAATG
AAGCGAGTAAGAAAAATTAGTAAGTAacttaaagttattttagtaaaatt
ggtcctgtgCGGCAATTAAGGGGaataaagtataatttttaagattgggg
cgtgCGTTTTAAAAACTTCCTTCAGTGCCCCTTGCTATTTAGCGCCCCCT
TAAAAAAGCTCTGTTGGTGGGTCGTGGCCCCTGCCTCTGCCAGAACGcta
ctgattttgacctattgaaaaacAATGAGAAAATGGAAACATGATATTAG
AGTAAAGAAATGTGCGAGAGAAGCGAGCAAAAGATTTTGCATGTTAttct
tgaaaatcaattttcgaaaCATCTTTCAAAGGCCAGCGATACTAccttga
atgtttttttatttttagtcttgaaaatttaattgaggagatttgaagaa
aatattggagaaattaGAGAAAAAGTAGGAGATTTGAGGAGAATTGAGGA
gacatttgaaatttaaggaGAATTGAGGAGATTTGAGGAGCTGTGGGAGC
CCTGTAAAAGAATTTCATGATCTACTGGTTCGAAAGccgttttaaaaata
aataaaacctaATTTCGTTGAACGATATTTCGGTCCTGACTTGTCTTTTT
GCCCTTAGGTTAGGTAACACAAATGATTTGGGATTTATAGTTGAGAGGAT
CAATTGTGCCATCACCCAAACAAGCAAGCAGGCCAGGGGGAGGCACTGAC
CTTTACGGCCAATAGGACGTACCGCTGAAGTTTGAAAAGTGAACCCTGTC
ACGAATGTTAAATTGTAAATTCGGGTCTATCAGAGAATGAAAAATCGAag
ttcccattttcaccctgaaaagtggcaaaaataaccaaaagtcgaccctg
cCAGAAACACATCTTGAAAGTTAGTAAATTTAGGATTCTGTCAGGTATTC
AGAGCCTCAAAAATGGGACCCTGACCAACGGCATGTCCCTGTACCCAACT
TTGCCTAAGTGACCTCCCCCCCAAGCAAGCAGAATATGTACTTAATGAAC
ATGAAGATTTTTCATATgtcttttgttcttttaaagctACAGTTGATGAT
GTAAACGTAAACATGCCAGATACCGAGTCAACAATTGCTAAAGAATTGGC
ACCTGCCGTTGCTATGGCAACTCTCATCGTATCATTAGGCCCTTTACTCA
CTAAAACGTATTTTTGGTGGTTTATTGGTTTGACAACGTTACTAATTATT
GGACTTGAGATATACCAAAAGTGGAAGAAAAAACAAGATCCagttcaaaa
aacaatgaaaattatccgtCACAACCATCATCAATTTAAAACCATTGGTA
GAGTCGTACAAGCTCATTCTCCTCNaaaaaacaatgaaaattatccgtCA
CAACCATCATCAATTTAAAACCATTGGTAGAGTCGTACAAGCTCATTCTC
CTCaaccaaaaaagaaagaagacaTCAAAAAAGGAAGTTCAAGTCCCATC
TTTAGTCCCAAAATGTTGAAAAGGAAACTTGTAAAGTGGATGAACGTGAA
TAAGATTTGACAGAATAATGTTTAGGGTTACAGTAttacaaccccttctc
acagacccggtg

Coding sequence (CDS) from alignment at sc0000028:907694..912055+

>TCONS_00003468 ID=TCONS_00003468|Name=TCONS_00003468|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000028:907694..912055+ (Clytia hemisphaerica)
ATGAAAATAGACGGTGGAGctACAGTTGATGATGTAAACGTAAACATGCC
AGATACCGAGTCAACAATTGCTAAAGAATTGGCACCTGCCGTTGCTATGG
CAACTCTCATCGTATCATTAGGCCCTTTACTCACTAAAACGTATTTTTGG
TGGTTTATTGGTTTGACAACGTTACTAATTATTGGACTTGAGATATACCA
AAAGTGGAAGAAAAAACAAGATCCagttcaaaaaacaatgaaaattatcc
gtCACAACCATCATCAATTTAAAACCATTGGTAGAGTCGTACAAGCTCAT
TCTCCTCNaaaaaacaatgaaaattatccgtCACAACCATCATCAATTTA
AATGAAAATAGACGGTGGAGctACAGTTGATGATGTAAACGTAAACATGC
CAGATACCGAGTCAACAATTGCTAAAGAATTGGCACCTGCCGTTGCTATG
GCAACTCTCATCGTATCATTAGGCCCTTTACTCACTAAAACGTATTTTTG
GTGGTTTATTGGTTTGACAACGTTACTAATTATTGGACTTGAGATATACC
AAAAGTGGAAGAAAAAACAAGATCCagttcaaaaaacaatgaaaattatc
cgtCACAACCATCATCAATTTAAAACCATTGGTAGAGTCGTACAAGCTCA
TTCTCCTCNaaaaaacaatgaaaattatccgtCACAACCATCATCAATTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001927XLOC_001927Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003468-proteinTCONS_00003468-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003468-exon-sc0000028-1491911889:907694..907826TCONS_00003468-exon-sc0000028-1491911889:907694..907826Clytia hemisphaericaexon
TCONS_00003468-exon-sc0000028-1510915933:907694..907826TCONS_00003468-exon-sc0000028-1510915933:907694..907826Clytia hemisphaericaexon
TCONS_00003468-exon-sc0000028-1575043694:907694..907826TCONS_00003468-exon-sc0000028-1575043694:907694..907826Clytia hemisphaericaexon
TCONS_00003468-exon-sc0000028-1491911889:911530..912055TCONS_00003468-exon-sc0000028-1491911889:911530..912055Clytia hemisphaericaexon
TCONS_00003468-exon-sc0000028-1510915933:911530..912055TCONS_00003468-exon-sc0000028-1510915933:911530..912055Clytia hemisphaericaexon
TCONS_00003468-exon-sc0000028-1575043694:911530..912055TCONS_00003468-exon-sc0000028-1575043694:911530..912055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:907694..912055 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.230643	0.089266	0.0873329	0	0.084015	0.304082	0.0948925	1.66091	0.164585	1.19812	1.05013	0.262168	0.217811	0.805817	0.816723	0.236738	1.21324	0	0.789292	1.4483	0.66925	0.180791	0	0	0.15109	0.108105	0.115372	0	0.178309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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