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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003481 ID=TCONS_00003481|Name=TCONS_00003481|organism=Clytia hemisphaerica|type=transcript|length=1560bpRun BLAST on NCBI protein sequence of TCONS_00003481-protein >TCONS_00003481-protein ID=TCONS_00003481-protein|Name=TCONS_00003481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp NLYDVNDTKPCSEQCYMHLEKHPSSIPPAPPTLTIKEEEQPPTPVETPTERun BLAST on NCBI transcript from alignment at sc0000028:329809..344695- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003481 ID=TCONS_00003481|Name=TCONS_00003481|organism=Clytia hemisphaerica|type=transcript|length=14887bp|location=Sequence derived from alignment at sc0000028:329809..344695- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:329809..344695- >TCONS_00003481 ID=TCONS_00003481|Name=TCONS_00003481|organism=Clytia hemisphaerica|type=CDS|length=17121bp|location=Sequence derived from alignment at sc0000028:329809..344695- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003481 vs. Swiss-Prot (Human)
Match: EZH2 (Histone-lysine N-methyltransferase EZH2 OS=Homo sapiens GN=EZH2 PE=1 SV=2) HSP 1 Score: 417.157 bits (1071), Expect = 9.132e-137 Identity = 200/325 (61.54%), Postives = 253/325 (77.85%), Query Frame = 3
Query: 324 QEADWLPGDLSLFRVLRSSFGSNYCTITKLLENRYTCQEVYKHSQEE-------PDGEVDNLDSESTPPXXXXXXQTVRSWANHCKKVQMKKENASSYLYNFTPCDHPGQPCNESCICIATHNFCEKYCQCSMTCQNRFPGCRCKAQCLTKACPCHLAVRECDPDICKSCGADNFSVELQNSTCKNIGMQRGWRQHMLLAPSDVAGWGIFSKIAIPKNTFVSEYCGELISQDEAERRGKVYDKTMCSFLFNLNHEYVVDATRKGNKIRFANHSINPNCYAKVMMVNGDHRIGIFAKQNIAAGEELFFDYRYGPTDSLRYVGIEKD 1277
+ +W + S+FRVL ++ N+C I +L+ + TC++VY+ +E P +VD TPP+KKK+K R WA HC+K+Q+KK+ +S+++YN+ PCDHP QPC+ SC C+ NFCEK+CQCS CQNRFPGCRCKAQC TK CPC+LAVRECDPD+C +CGA + + +N +CKN +QRG ++H+LLAPSDVAGWGIF K + KN F+SEYCGE+ISQDEA+RRGKVYDK MCSFLFNLN+++VVDATRKGNKIRFANHS+NPNCYAKVMMVNGDHRIGIFAK+ I GEELFFDYRY D+L+YVGIE++
Sbjct: 428 ENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTK-TCRQVYEFRVKESSIIAPAPAEDVD------TPPRKKKRKH--RLWAAHCRKIQLKKDGSSNHVYNYQPCDHPRQPCDSSCPCVIAQNFCEKFCQCSSECQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCLTCGAADH-WDSKNVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVMMVNGDHRIGIFAKRAIQTGEELFFDYRYSQADALKYVGIERE 742 The following BLAST results are available for this feature:
BLAST of TCONS_00003481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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