TCONS_00003489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003489
Unique NameTCONS_00003489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003489 ID=TCONS_00003489|Name=TCONS_00003489|organism=Clytia hemisphaerica|type=transcript|length=1482bp
CCCGCGTGCTTTCCACATGCAATTTCCGCGCCATCTTGTTTGTGTAGCAG
TACCGTCACCGGGAAATATTTTGGGGAAGAATTCGATCTCAGTTGGACTC
ACAACGCCACAATTAGATTATACTAAATATTCAGACTTTTCTAATTAAAG
TTTTATCGCCAACTCAAAAAATCCTAGAAAGTGAACCTTGAATCGTCGCC
TCTTGACTTTTTCTAAACACTGGCAAGGAGGAAAAGACAATATTCAGCAT
ATTACGATTCTCTGGAGttGAATTGGACTTTGCCAGAAAGACAAGATATC
TTCACCATATTCTGTTTTGGTTACAACACAAAGAAAGCTACAAAAATGTC
GAGTGAAAAGACCCCCATCACTGGCGACAACAAGTTGCAGCAAACACAAA
AGCAAGTTGACCAGGTTGTTGATATAATGCGACAAAACATGGACAAAGTT
TTGGAAAGAGATTCTAAATTATCAGAACTGGACAACCGTGCTGATGCTCT
ACAAGCAGGAGCTTCACAGTTCGAAACAAATGCTGGtaaattaaaaagga
aaatgtgGTGGCAGAATTGTAAAATGTGGATTATTCTCATTGTTGTAATT
CTGGTTATCATTGCAATTATAGTCATTTGGGTTGTATCTACCAATTAGAA
AATCATTATTGGAGTTGGAACACTGTACTTCTGTAGCACAACACTGATGA
CAAAATGTTAGCTTTGGCTGGTCACTGGGGATATGATGGTATATATTTAC
TTTGGCAGATGATATTCTTGAtgttgtgaaggaaaataaaatgTGGGGAG
AAGACACAATTATACAAATTGTTCTCATGGAGTATTTTGTACATAGctat
ttttttaatgtcgatATTGCAGTTTGTATAAGACCTTCTAAAAGATTGTT
AATTATTATGTACAAAGCACACTTTTTGTTAGAAAGTGTTTGTGCGACAA
Cctttttcttccatttcttttgtttttatgttctttttttttttcttttt
atgccAATCTGATGATTTACTTTTAGTTTATACTGTTTTTTActgtttat
ttaatttatttgaaattcaaaaacataatttgtAATCTTACACGTAGAAA
AAATGTTTCACTAATTAGTATTATCACAATTTAGCTAGAATTGGAGAAAA
TATACTTCTGAAAGAATTCTTTAATTAGAACAACTGTTTTTGCAGGGTGT
CGTCTGTGATTTTAAGTGCTTTGTGTGATGTATTTCTTTCTACTAGTATC
TGCTGAAAAAAAACTGCACAAATTATTTAACACATTGCTACGTTTATTAT
TTTGATTCTAGTTAAATTATAATAACATTAAATAATGGGTGCTTTGTGTA
TATTCTTTCATTACCAGAATTATATAATGAAATTAgaggaaatttaaaaa
ttgttatCCTGAATTTTgcaattatttttgatttttaagactTTCTTAAT
AATGACTGGAAGCTTCTTTATGTTTAAATGGG
Run BLAST on NCBI

protein sequence of TCONS_00003489-protein

>TCONS_00003489-protein ID=TCONS_00003489-protein|Name=TCONS_00003489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MSSEKTPITGDNKLQQTQKQVDQVVDIMRQNMDKVLERDSKLSELDNRAD
ALQAGASQFETNAGKLKRKMWWQNCKMWIILIVVILVIIAIIVIWVVSTN
Run BLAST on NCBI

transcript from alignment at sc0000028:472894..484080-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003489 ID=TCONS_00003489|Name=TCONS_00003489|organism=Clytia hemisphaerica|type=transcript|length=11187bp|location=Sequence derived from alignment at sc0000028:472894..484080- (Clytia hemisphaerica)
CCCGCGTGCTTTCCACATGCAATTTCCGCGCCATCTTGTTTGTGTAGCAG
TACCGTCACCGGGAAATATTTTGGGGAAGAATTCGATCTCAGTTGGACTC
ACAACGCCACAATTAGATTATACTAAATATTCAGACTTTTCTAATTAAAG
TTTTATCGCCAACTCAAAAAATCCTAGAAAGTGAACCTTGAATCGTCGCC
TCTTGACTTTTTCTAAACACTGGCAAGGAGGAAAAGACAATATTCAGCAT
ATTACGATTCTCTGGAGGTATTTACCTACAATTTCACAAACAAACATTTT
GTGCGAGAAACTTCAATTCAAGCTTTTAAGTTAACTGCACCGTTGTTTTT
ATTTTTTATCAGGTATCTATGACACTGAAAATCAAATAGAAACTAAAAGC
AAATTTTTTCTTTAAAAAATATCTTGATAATATCTTTTATTTTTATTTTT
TTTCTTAGTTGAATTGGACTTTGCCAGAAAGACAAGATATCTTCACCATA
TTCTGTTTTGGTTACAACACAAAGAAAGCTACAAAAATGTAAGGGCTTCT
TAATTTCATTTTTATACCGTTATTATTCATACTTAAATTTTTGAANAAGC
TACAAAAATGTAAGGGCTTCTTAATTTCATTTTTATACCGTTATTATTCA
TATTTAAATTTTTGAATCTCTCTCACTCACACAACAATGGGTCATTCCAG
ATAAATTTTATTACCCCCGTCTAACGACGTACATTTTGAAATGTTTTCTA
GCTTCAAAAATAATTTTTTGTTCAGTGGTGGTCCGAAATTCCAATGAAAA
TCCATGTCTTTTTGCAAAATACGTTGGAAATTCAACTCTTATCTTTTTTG
CTGTTTTTATTTCAATTGCCTTGGAAATTCATGCATTTTCTTCTCTGGCC
TTGGAAATTTTAAATTTTTGGTGAACACCGTTGCCCTCTGAAATTTTGTG
TCGTCCGCCCCCTGTACGTGTTACAGACAAATTCTGGAATGGCCCAATAC
CGTAAGTTGGTCCAATTTTGACAACAACCCACGGCATGGCCCGAGCATAA
TGTTTGGGGCCTCTTGATTGATACTTTTTTTAAATGGCCCGCGCGTGGCG
CAGTTTCGTACCATGTTCAGGCCAGATTTTCGAAAACTTGCTACGCTCGC
GCGTGTAATTTCAGGACCCAATATTTTTATTTTAAATTCCTTATTTTAGC
AAAGAAATTTAAAAATCTTCATCTTTATTCAAATATATATTGTTCAAATA
TAAAAGTTAATCATCTATTTTCCAATTAAGTTAGGAAAATTATTAAAAAG
TTAATCATTTGAATCTTACATAATATGGTCTTCTTTTTATTCTTTATCCC
GTTCCCTTTTCTTGTGGTCTTCCCCTATTCGAAGCAGAATTTTTCTGGAT
CGTTTTTTTTACTGTTATACAACTTTGTGAATCAAACTGGTATTTGGAAC
TTTGAATTTGTTTAATGAAAATATTTAACAATGGATGATGATAAACCAGG
AAAGGTAAATAAAATTAAATTCAATTGTAAATGGCCCGAACATGGTCTGA
ACAGGCCCGAACATGTTCGGGCCATGCCGTGGGTCGTTGTTGACATCCCT
CTTCTAATTTCGATCACCCTTCTTTAAAGATAGGAATAATAGGAAGGTCA
GAATCACTGATGGACTAGATTTAGACAAAGTCAAAACCTAAAAGTCAGTG
CTCTGTGGTTGTGAAGTAGTTTACAAAATTGTTAAGATAAAAAAAATGAC
ATAGTACTTTTAAACAACTTTTTTCAAAATCATTTTTTTGAAGCTTCTTC
GTAGAAGAATGTGTCTTTCCATAAGGAATTTTGTAACACTTCATGGCAGA
TTAATAAGACAATCAGTTGGGTGTTTTAAAGATANATTTGTTTAATGAAA
ATATTTAACAATGGATGATGATAAACCAGGAAAGGTAAATAAAATTAAAT
TCAATTGTAAATGGCCCGAACATGGTCCGAACATGTTCGGGTCATGCCGT
GGGTCGTTGTTGACATCCCTCTTCTAATTTCGATCACCCTTCTTTAAAGA
TAGGAATAATAGGAAGGTCAGAATCACTGATGGACTAGATTTTTTTCTCT
CTCAGATCGATAAGCAAAGAAAATTAGTTCAATCAGGTTCAATGTGTCAG
TCAGTTAGTGAAAGTACCTCGATTTCAAGCATGGTCAAAGTTCACAGTAA
GAACGACTTTCTTTTTTATTACGGAAACCAAATGAGTGAGAACAAAGTCA
AAACCTAAAAGTCAGTGCTCTGTGGTTGTGAAGTAGTTTACAAAATTATT
AAGATAAAAAAAATGACATAGTACTTTTAAACAACTTTTTTCAAAATCAT
TTTTTGAAGCTTCTTCGTAGGAGAATGTGTCTTTCCATAAGGAATTTTGT
AACACTTCATGGCAGATTAATAAGACAATCAGTTGGGTGTTTAAGATAAA
AACGGCAATTATTGCTCTTTTCGGCAATTATTGCCGAAAACGGCAATTTT
TTCAACAATGAAATGCTGAATCAGCAAAATGTGTTGTCCTTTTAAGGGCA
AAGATGTCAGAGGTGTTTGAAAATAGTAAAATTGCTTTGAGAAAAAGGTT
TTTCAGGATTTTTAAAAGTGATTTTTTCATGGACAATAGGAAAACGAAAG
CTTCTTCGTTTTAATTTTCGCATTTATGGGGAAGAATAAAACTTTTAGAA
AATGTTTATTCAATATGAGGATTCCCATTTCCGTAAAATCGCAATTCCCC
ATGGCTGCAAAATGGTGTCTATGGGTAATTCTTTTGTTCCTTTGCTATTT
TCTTTTGTTCTATGTGACATAAAGAAGCTTCACAAACCGAAGTACTTCCA
CTAACTGTCAGTGATTCTGACCTTCCTATTATTTCTATATCTAAAAAAGG
GTGTCGAAATTAGAAGAGGGATGTCGCTAGTAGTAGACCAACTTATGGTA
CAACATACGATCAATAACTTTTTCCAATCAATGACCATTTGTTAACCAAT
CGATGGATTGGAAGCGAAAAGAAGCGGCGAAAGAAAAGGCGCTGTGGTAT
AGTGGTCATTGACCTTGGTTGCTGCACAGGCAACTGAGGTTCGATTCCCA
GTCGCAGCCTTTCACTTGGCAAGTAAATGAACCTTCACCCGGGTCAACCC
ATGCCATGTGAAGAGAATTGGGTACTCAGTGTAAGGTGCTGGCGGCGCTC
TTTGAAGCATCTATAGTTGCGAAACTCAACCAAATAGAATAGAAAAAAAA
GATGTCATTGACCACATTCCTGGAATTTTCAAATGAAGCAGCCTGAAAAT
GCTACGAAAAAATTATTTAATGGTGGAAGGAAAGTGAACAAATATCATAT
CAATATCATTCTTGCAGCTACAAGGTTTGAACATGAGAAATTGGCAAAAA
TCATTCCGTTTTTTCCATGTCTTTATAATAATTCCTTGGATTGAGATGTT
TTGTGATGTTTTACATGTTATTCAAGTAGGTTAAAACAAATTACACAACC
CCACCACCTCAATCACTATCTAACCAAACCGTATCCACTTTGTTAATCTG
GTTATCAAAATCTTTAAAAAGCATTCAAGCTCTATCAGAAAGATTTTCCC
CTGCAATGTCTCATATTGTATCACTTTTATATCAGCTGACTTTCACATGT
ATGCTCCATATCTGCAACTGGTGTGATTTCAATTTAACTTTCCTAGTTAA
CTTGATTCTTAGGCTGTTCCTTATAAAAATCCTTATGGGTGTCATAAAAC
AATTTTCAATTTCTTTTCAAAAGTGATTGATTCAAGGGTACATTTTAGAT
ATAGCACATGTTCACACTAGGTATTTAAAAAGATAATGTTTTATAAATAT
GAAGACTTTTAAGGGCTGAATGCTCAATGATTCCTTGGCCATGCTAATTA
AATCTGTTTACTGGTTATAATGGAATAGGTTATGTATCATGTTGAAATTT
AATTTTTTATGGTCTGATTCTTTATCTTTTAAGAAAAATCAAAAATCAAT
TTTACTTTAAAGTTAAACTTAAGATTTTTCAAACTCGAAATTATGCATCA
GGCTGACTTAAAACACTCTTTATCTAGTGACTCAGAAAGAAGAATGTTTT
TTGGAATAACCTTATTTTAATGATTTTGTACTACTGTAATACAGATTAAA
TATTGTATCAAATAATCTCTAACACTTTCAGGTCCTACGAATCAACACCA
ATCAGTAACTCTCCTTCACCGTATGGGTAACTAATTTACTAAACACTGAG
TTGAATCAGAACTAACAAAGTACATTTCAAGTTTACAATAAAGAACTTGC
TAATAATTAGATATAATTAACACTATAGATATGATTAACACTAAAGATAC
AATTAACACTATAGATACAATTAACACTATGATTATTGACATTTAAATAT
TAAAACGGAACTTTAAATAACCAACCAACCTCCCCTAATGGCATTACTAA
AATCTCAGACATATTTTAGGACTAAAATAATTGTCCTTGATTCATTGAAC
CATAACCCAATTTTAAAAATAGGTATGTTGATAAGTATGCAGGCCATTTT
TCATGCCCTTTAAGCGTCTGATTATCAGACGCTGCCCCTCTTGAAATTAC
TAGAATATTGGTAAAAGCAGCCTTTTTAATGGAAAAACACTGGAACAAGC
ACTCTTTTTGGCCACCAACGGACGCTGCCTTACCTTTCTAAAATATGGCC
TGGTATGTACACATGTTTTAGCCGATCTTGAACCTAATTTTGCTCTGATT
CTCTCAAAAAGGAAACTTGAATATAAAACCCTGCACAGGTATTAACAGTA
AGGGTTCTACTTTTTAAATCGAGGAATTGCATGTCTTCAAAAAGTTCTTT
AACCTTTCCGCCCCGAAAGACGTATCTGATACGTTCACCATACGTTCCGA
AAGACGTATCTGATACGTTTTTAAGGTAACCTTTATATTTGGTCGGATTA
CGCCCCAACCGTCAGAGGTACGGTAAAACCGATTAAAAAATCGGAATCAG
CGTGAAATTTCAGATAAGAAACAATCAGGGTTTGTTTTGCTATGACGCAA
CATTTTTCAAAAATAGAAATGGTAGACCAAGCTGTGTTGCGTGATTTTGT
GAAACTGGAGGAGGCAGAAAGTTAGCTATGAAAGTAAGGGTTTATAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
GTAAGTGTTTTTATCAATTTTTCAGTTCTCTATAATTTTTTGAAGTTTTG
CACCAAAAAATGACTTTTTCGCGACATTGTTTTTTCATATACCTTTTGTT
TGGCTTCATAATTTCTGTCCAAAACAGTTTGAAGTACTCAGTTAAACATA
TTTAGAAAGGGGAAAGGTAGGGCTTTCCAAAAATATAAGGGTTTTTTTCT
GAAGTTAATTTTTCAAAAAGTTATAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGTTAT
AACGGTTATCGTGAAAATTGCATTTTCATCAAAAAACGTTGCGCGCAGAC
GGGCTGAAGATATAAAAATGTTGCGCGCTGGAAAGGTTAAATGTGAAAGA
ATCTTGATTTGGTTGGAATAGTTACATAACATGGAAAAGATTGAAGACAG
TATATGACGAAAATTCTTAGTACATAAAGTTTTTAAACAATAATACTTTT
GAAAAATATGTTCTCTCTGAGATTTTAGTAATGGGGTAACCTTTAACATT
TACTCGGCTTAAACATACATTTTTTAACAGAACACAATATTTTGAAGATT
ATCATCAAGTCAGGGGGGGGTATCGAGTCAGTGTACTGGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTGTACTAAA
AAGGGTGGTGGTCTAATTTTTTGGAAAAAAATCCAAAAATCAAGTTAGTA
CCCTATGGTCCAGTACACTGACTTGGTACCCCCCCCTGATCAAGTCCTTG
TAGCAATAATGAACGGTGAAATTTTATTGTAATCAGGAAATTTTACATGA
TATTTATAATAATGGGTCTTTATAATTGACCTTTTATTTAATTTTACTGA
TAACCAAACCAATTAACTGACACAACTTCAACATAAAACACACATAGTTG
GACCCTTGACAAACCCTTTTCAACAATTTTCTTGCTTCTGTAGGTCGAGT
GAAAAGACCCCCATCACTGGCGACAACAAGTAAGACTTCTATTTTGATAT
TAGGCAAGACCAATTTGATTAGTTGTTTTATGGGCCGGACCCGCCCAGAA
ATTCCAAAAATAAAAATAAAAATCGACTGACCGACCCTCTTTTTTGGGTA
GCTTGGCCCGCAAAACAACAAATTAAATTGGCCTCGTCTTACAGCTACTT
TTTTGTTTAATTCCTAATCAGTGATAAATTTACCACTAGCATTTTTCTCA
TGTGGGCAGATCTCGTCTTGCAACTATTACTTCTTTATGACTGAACTTTA
TTTTCTGTTCAGGTTGCAGCAAACACAAAAGCAAGTTGACCAGGTTTGTT
TTACTAATTTGTTTTTCCGTTTTGATTGACTAGAAAGGCATAAGTTCATT
GAACAAATTTTTCTTAGTTATTTTCTGAATTGAAAAAACTTTTGATTTGA
ATGAAAAAGACTTTCATACAACAGTGCTTTTAATCTAGGACTACAAAGTC
TAGCCGAAAACCAATGATGTATGCTTTTATATTCTAGGTTGTTGATATAA
TGCGACAAAACATGGACAAAGTTTTGGAAAGAGATTCTAAATTATCAGAA
CTGGACAACCGTGCTGATGCTCTACAAGCAGGAGCTTCACAGTTCGAAAC
AAATGCTGGTAAATTAAAAAGGAAAATGTGGTGGCAGAATTGTAAAGTAT
GCTTGCTCTCTTTAAATATTCGTCCATTTGTACCTATATGCCACTTTTAT
GGTCTCAGTGNAAAGTATGCTCGCTCTCTTTAAATATTCGTCCATTTGTA
CCTATATGCCACTTGTTAACACTTTTATGGTCTCAGTGGTATCCTACACA
TTCTAAATCTAAAATCAAGTAAAAAGAACAATTCTTTTTCCAGAATTTCT
CAATCAAAGAAAAACTGCTATTTTTTTAAGACACCTGTTTGAAAAGACTT
GTTGTTATGTTCTAAGGCAAAATAAAGTACTAGAAAAAGTAATGAATAGA
ATCGCTCAATCATCATTTACTCTTTCTTTTAGATGTGGATTATTCTCATT
GTTGTAATTCTGGTTATCATTGCAATTATAGTCAGTAAGTAAATACTGTC
CTCAATGAAAGCTACATTTGCTTAGTGCATTCTTGTGCAATCAAATCAAT
ATAATTTTCCCAATATATTAGGTTTTCACCTTGAAAGTGAATGGATGAGA
TTTGCAGTACCTACTCTTTAAGCTATGAGTTCTAGAACTGCTCGAAAAGC
TTGCAAACGATTCAAGTGGTTTTGGACCCATTCATTTTATTATGATATAA
ATTTCCAGAGATATACCATACCAAGGGGGGATTGACCATGAAAAATGGAA
TGATATACCTAGAAAAATCTTCATGTAAATTATGAAAATGAAAAATTCAC
TGAAAATTCTAGATATAATTAACCAAATCTTTCCATTCACAACTTTCCTT
TAAAATCGTATAAACAAATTTCCGTCAGTCAAAATGGGTCCATTTTTTGA
GCCTCACCAATTAGAATATCCCTGTTCAGGCTTTTCCAGGAAGAAATAAG
TAGGTGAGCGACGAATCACTCACGTAACAAAGACAAAATTTTTACGAAAT
CACGCACATGAACCAATCTTAGCGTGTGCGATTTTGTACAAAATGCCCTT
AGATATTTTTCTATAGAATCAAAGTATAATTGATGTGCCCAATTTTTCGC
TCATCATACGAGATTGACAAGTGTTTTACTAAAAGCGAGCGCGATCGCGC
ATGTCTTATTGAAAAGCATGCCTGTTCAGCAATAATTTGAAATGGCCAAA
AATTCACCAAATTTACTGTTGGCATCATCAGCTGTACACCAAGATCTACA
TTTTGCCATTGAATCATTCTAATTGAAAATGGTACAATTTATTGAATTTC
AATATCTAAATTACAAAATTATTAAGTTTGGCACTTTACTGCCTCAGCTG
AAATATTGTGAAATATATGAAAAAAGTCCAATATATTTTAGATCGATTGT
GGGGTTTTTCTGGTGGTTCTTGGAACCATAACTTATTTTGGTCAAATTTC
ATATTATTTTCTTTACTTTTCTTTAGTTTGGGTTGTATCTACCAATTAGA
AAATCATTATTGGAGTTGGAACACTGTACTTCTGTAGCACAACACTGATG
ACAAAATGTTAGCTTTGGCTGGTCACTGGGGATATGATGGTATATATTTA
CTTTGGCAGATGATATTCTTGATGTTGTGAAGGAAAATAAAATGTGGGGA
GAAGACACAATTATACAAATTGTTCTCATGGAGTATTTTGTACATAGCTA
TTTTTTTAATGTCGATATTGCAGTTTGTATAAGACCTTCTAAAAGATTGT
TAATTATTATGTACAAAGCACACTTTTTGTTAGAAAGTGTTTGTGCGACA
ACCTTTTTCTTCCATTTCTTTTGTTTTTATGTTCNTTTGTACAAAATGCC
CTTAGATATTTTTCTATAGAATCAAAGTATAATTGATGTGCCCAATTTTT
CGCTCATCATACGAGATTGACAAGTGTTTTACTAAAAGCGAGCGCGATCG
CGCATGTCTTATTGAAAAGCATGCCTGTTCAGCAATAATTTGAAATGGCC
AAAAATTCACCAAATTTACTGTTGGCATCATCAGCTGTACACCAAGATCT
ACATTTTGCCATTGAATCATTCTAATTGAAAATGGTACAATTTATTGAAT
TTCAATGTCTAAATTACAAAATTATTAAGTTTGGCACTTTACTGCCTCAG
CTGAAATATTGTGAAATATATGAAAAAAAGTCCAATATATTTTAGATCGA
TTGTGGGGTTTTTCTGGTGGTTCTTGGAACCATAACTTATTTTGGTCAAA
TTTCATATTATTTTCTTTACTTTTCTTTAGTTTGGGTTGTATCTACCAAT
TAGAAAATCATTATTGGAGTTGGAACACTGTACTTCTGTAGCACAACACT
GATGACAAAATGTTAGCTTTGGCTGGTCACTGGGGATATGATGGTATATA
TTTACTTTGGCAGATGATATTCTTGATGTTGTGAAGGAAAATAAAATGTG
GGGAGAAGACACAATTATACAAATTGTTCTCATGGAGTATTTTGTACATA
GCTATTTTTTTAATGTCGATATTGCAGTTTGTATAAGACCTTCTAAAAGA
TTGTTAATTATTATGTACAAAGCACACTTTTTGTTAGAAAGTGTTTGTGC
GACAACCTTTTTCTTCCATTTCTTTTGTTTTTATGTTCTTTTTTTTTTTC
TTTTTATGCCAATCTGATGATTTACTTTTAGTTTATACTGTTTTTTACTG
TTTATTTAATTTATTTGAAATTCAAAAACATAATTTGTAATCTTACACGT
AGAAAAAATGTTTCACTAATTAGTATTATCACAATTTAGCTAGAATTGGA
GAAAATATACTTCTGAAAGAATTCTTTAATTAGAACAACTGTTTTTGCAG
GGTGTCGTCTGTGATTTTAAGTGCTTTGTGTGATGTATTTCTTTCTACTA
GTATCTGCTGAAAAAAAACTGCACAAATTATTTAACACATTGCTACGTTT
ATTATTTTGATTCTAGTTAAATTATAATAACATTAAATAATGGGTGCTTT
GTGTATATTCTTTCATTACCAGAATTATATAATGAAATTAGAGGAAATTT
AAAAATTGTTATCCTGAATTTTGCAATTATTTTTGATTTTTAAGACTTTC
TTAATAATGACTGGAAGCTTCTTTATGTTTAAATGGG

Coding sequence (CDS) from alignment at sc0000028:472894..484080-

>TCONS_00003489 ID=TCONS_00003489|Name=TCONS_00003489|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at sc0000028:472894..484080- (Clytia hemisphaerica)
TTTGGGTTGTATCTACCAATTAGATGTGGATTATTCTCATTGTTGTAATT
CTGGTTATCATTGCAATTATAGTCAGTTGTTGATATAATGCGACAAAACA
TGGACAAAGTTTTGGAAAGAGATTCTAAATTATCAGAACTGGACAACCGT
GCTGATGCTCTACAAGCAGGAGCTTCACAGTTCGAAACAAATGCTGGTAA
ATTAAAAAGGAAAATGTGGTGGCAGAATTGTAAAGTTGCAGCAAACACAA
AAGCAAGTTGACCAGGTCGAGTGAAAAGACCCCCATCACTGGCGACAACA
AATTTTGGGTTGTATCTACCAATTAGATGTGGATTATTCTCATTGTTGTA
ATTCTGGTTATCATTGCAATTATAGTCAGTTGTTGATATAATGCGACAAA
ACATGGACAAAGTTTTGGAAAGAGATTCTAAATTATCAGAACTGGACAAC
CGTGCTGATGCTCTACAAGCAGGAGCTTCACAGTTCGAAACAAATGCTGG
TAAATTAAAAAGGAAAATGTGGTGGCAGAATTGTAAAGTTGCAGCAAACA
CAAAAGCAAGTTGACCAGGTCGAGTGAAAAGACCCCCATCACTGGCGACA
ACAAATTTTGGGTTGTATCTACCAATTAGATGTGGATTATTCTCATTGTT
GTAATTCTGGTTATCATTGCAATTATAGTCAGTTGTTGATATAATGCGAC
AAAACATGGACAAAGTTTTGGAAAGAGATTCTAAATTATCAGAACTGGAC
AACCGTGCTGATGCTCTACAAGCAGGAGCTTCACAGTTCGAAACAAATGC
TGGTAAATTAAAAAGGAAAATGTGGTGGCAGAATTGTAAAGTTGCAGCAA
ACACAAAAGCAAGTTGACCAGGTCGAGTGAAAAGACCCCCATCACTGGCG
ACAACAAATTTTGGGTTGTATCTACCAATTAGATGTGGATTATTCTCATT
GTTGTAATTCTGGTTATCATTGCAATTATAGTCAGTTGTTGATATAATGC
GACAAAACATGGACAAAGTTTTGGAAAGAGATTCTAAATTATCAGAACTG
GACAACCGTGCTGATGCTCTACAAGCAGGAGCTTCACAGTTCGAAACAAA
TGCTGGTAAATTAAAAAGGAAAATGTGGTGGCAGAATTGTAAAGTTGCAG
CAAACACAAAAGCAAGTTGACCAGGTCGAGTGAAAAGACCCCCATCACTG
GCGACAACAAATTTTGGGTTGTATCTACCAATTAGATGTGGATTATTCTC
ATTGTTGTAATTCTGGTTATCATTGCAATTATAGTCAGTTGTTGATATAA
TGCGACAAAACATGGACAAAGTTTTGGAAAGAGATTCTAAATTATCAGAA
CTGGACAACCGTGCTGATGCTCTACAAGCAGGAGCTTCACAGTTCGAAAC
AAATGCTGGTAAATTAAAAAGGAAAATGTGGTGGCAGAATTGTAAAGTTG
CAGCAAACACAAAAGCAAGTTGACCAGGTCGAGTGAAAAGACCCCCATCA
CTGGCGACAACAAATTTTGGGTTGTATCTACCAATTAGATGTGGATTATT
CTCATTGTTGTAATTCTGGTTATCATTGCAATTATAGTCAGTTGTTGATA
TAATGCGACAAAACATGGACAAAGTTTTGGAAAGAGATTCTAAATTATCA
GAACTGGACAACCGTGCTGATGCTCTACAAGCAGGAGCTTCACAGTTCGA
AACAAATGCTGGTAAATTAAAAAGGAAAATGTGGTGGCAGAATTGTAAAG
TTGCAGCAAACACAAAAGCAAGTTGACCAGGTCGAGTGAAAAGACCCCCA
TCACTGGCGACAACAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001940XLOC_001940Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003489-proteinTCONS_00003489-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003489-exon-sc0000028-1575043694:483814..484080TCONS_00003489-exon-sc0000028-1575043694:483814..484080Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1575043694:483543..483622TCONS_00003489-exon-sc0000028-1575043694:483543..483622Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1575043694:476602..476637TCONS_00003489-exon-sc0000028-1575043694:476602..476637Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1575043694:476288..476318TCONS_00003489-exon-sc0000028-1575043694:476288..476318Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1575043694:475935..476093TCONS_00003489-exon-sc0000028-1575043694:475935..476093Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1575043694:475547..475598TCONS_00003489-exon-sc0000028-1575043694:475547..475598Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1575043694:472894..473750TCONS_00003489-exon-sc0000028-1575043694:472894..473750Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1510915933:483814..484080TCONS_00003489-exon-sc0000028-1510915933:483814..484080Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1510915933:483543..483622TCONS_00003489-exon-sc0000028-1510915933:483543..483622Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1510915933:476602..476637TCONS_00003489-exon-sc0000028-1510915933:476602..476637Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1510915933:476288..476318TCONS_00003489-exon-sc0000028-1510915933:476288..476318Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1510915933:475935..476093TCONS_00003489-exon-sc0000028-1510915933:475935..476093Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1510915933:475547..475598TCONS_00003489-exon-sc0000028-1510915933:475547..475598Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1510915933:472894..473750TCONS_00003489-exon-sc0000028-1510915933:472894..473750Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1491911889:483814..484080TCONS_00003489-exon-sc0000028-1491911889:483814..484080Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1491911889:483543..483622TCONS_00003489-exon-sc0000028-1491911889:483543..483622Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1491911889:476602..476637TCONS_00003489-exon-sc0000028-1491911889:476602..476637Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1491911889:476288..476318TCONS_00003489-exon-sc0000028-1491911889:476288..476318Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1491911889:475935..476093TCONS_00003489-exon-sc0000028-1491911889:475935..476093Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1491911889:475547..475598TCONS_00003489-exon-sc0000028-1491911889:475547..475598Clytia hemisphaericaexon
TCONS_00003489-exon-sc0000028-1491911889:472894..473750TCONS_00003489-exon-sc0000028-1491911889:472894..473750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:472894..484080 -
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001388Synaptobrevin
IPR016444Synaptobrevin/VAMP
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00003489 vs. Swiss-Prot (Human)
Match: VAMP3 (Vesicle-associated membrane protein 3 OS=Homo sapiens GN=VAMP3 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.447e-23
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:  346 MSSEKTPITGDNK-LXXXXXXXXXXXXIMRQNMDKVLERDSKLSELDNRADALQAGASQFETNAGKLKRKMWWQNCKM 576
            MS+  T  TG N+ LQQTQ QVD+VVDIMR N+DKVLERD KLSELD+RADALQAGASQFET+A KLKRK WW+NCKM
Sbjct:    1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKM 78
The following BLAST results are available for this feature:
BLAST of TCONS_00003489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VAMP31.447e-2376.92Vesicle-associated membrane protein 3 OS=Homo sapi... [more]
back to top