TCONS_00003523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003523
Unique NameTCONS_00003523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003523 ID=TCONS_00003523|Name=TCONS_00003523|organism=Clytia hemisphaerica|type=transcript|length=1708bp
agtttgtgttGGCTTTCCTAGTTTGAGACTtccttttttttggggggggg
gcattctcaaaaatgatcaaaaggAAGGGGAGGAGGAGAAGGTAAAAAGG
GGGAAATGACACAAGGGAGGGGGTAAGAAAATGAGGCCTCCTAATAGGTA
GGTAATGAAAAGGGGGGATAGTCAAATAGGGATATATAATGTCCTATGTT
TGAAATAATCAATAAAATAGAATTGGTTCAAGAAACTAATAATCTGCCTC
AGTGTTATTAACAATGATAAATTtagtatttgaaaaaaaaagttcaataa
aTAATCCAAAGCCAAAAACCATTTACATGCATCATCACTTTAACGTCTGA
GAATGacaatagcgagattatgtattggtgatattctacggctacagTTA
CAGGGCTACCCATGCaggtcgtcaccaaaggcgacatgttgttgtctact
ttgctctgtacaggaaaaacaccaaaacactgtataagcaaagtcgacat
aatgccgtacgtcaaatctcgagcttgctttcacccgccattacttgcct
tactcgcaaTTTTCCTCGCCCTGTCTCGCCACTTTAACCGCAGCCGTAgg
cgtagagaattccagatacataatctcgctaatgtGGGTCCTTTGGTGGT
TTAATAGTTAGTATGATTCTCTACCGAAACATTATTCTTTGATTCAGTAA
CCCATTGAATAAACATTAGCGCCATGACTGTGACAATCATATACCAGAAT
ATCTAAAGATAGTAATAATTTCCAATCTTCCTCGTTTCATTTCCATTCCT
ATGATTCATGATTCAATTCCGCGATCATCGAAGGTGTGCAAGGAATATAT
CTGTGGCTAATCTTGAATAGACATTCATAAGCAGCGTAAAAGCATCCAGC
ACCCATGGCAAAACCAAGAAGTTTCTGAGACAATGTATGGAAATATAAAC
AAGTGAAAAATAACATGATTTCCCATAACAACATCAATAAAATAAGCATC
ATACTAAGTCCTTCGATTAGATTCTCGAAGACCTCTTCACGTATGGGTAC
ACCGAGGACGTACCTGACACCTTTGCCACGTTGGGGATCGGCAGGTTGAG
TGACACCATTATGATTACACGTCACAATATTGGTAGAACAGTTTAATTCT
TCATTTATGATCATTATACAGAAAGTGAGTAGAAAACAGTGTCCGGAAAT
ATCAAATCCATTCCAGATGTAATCATTCCGATGGCAGATTTGTTTTGATG
ATAGCTCACTTCCACCAACACACGTACCAGTTAGATTCTCAATAATTTCA
AATCCCTTTGTAAAAACAAACCATAACACGGTACAGACTCCAAGCCTGGA
CAAATGTTTGTAAAATGTACGCCAGTTGTTGACTTTTTGTTTAATCAGTA
GACTTGTGATATAAGCAGAGAGCAAGATGACAGTCCAACCCCATCCTTTC
TTCacaaaataaacattgaaaaagtTCTTACTGTTGGAAAAGTAAGATGC
CGGTAGTGGGAAATAGTCATGCAAAAATGAACCAATGACAAAAGTTATCc
aaatcaaagtaaattttgtatttttacgcATAATCAACATGGTTTGTAAT
GACTGACGATTTGTTGCAACCCATTCGACAAAATCGTTGAATGAAAACAT
GGTGCTCAAAGTATTCTCTCCTAATTTAATTCACAATGTATGATAAATTT
AAAGTcct
Run BLAST on NCBI

protein sequence of TCONS_00003523-protein

>TCONS_00003523-protein ID=TCONS_00003523-protein|Name=TCONS_00003523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MFSFNDFVEWVATNRQSLQTMLIMRKNTKFTLIWITFVIGSFLHDYFPLP
ASYFSNSKNFFNVYFVKKGWGWTVILLSAYITSLLIKQKVNNWRTFYKHL
SRLGVCTVLWFVFTKGFEIIENLTGTCVGGSELSSKQICHRNDYIWNGFD
ISGHCFLLTFCIMIINEELNCSTNIVTCNHNGVTQPADPQRGKGVRYVLG
VPIREEVFENLIEGLSMMLILLMLLWEIMLFFTCLYFHTLSQKLLGFAMG
AGCFYAAYECLFKISHRYIPCTPSMIAELNHES
Run BLAST on NCBI

transcript from alignment at sc0000028:536054..537761

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003523 ID=TCONS_00003523|Name=TCONS_00003523|organism=Clytia hemisphaerica|type=transcript|length=1708bp|location=Sequence derived from alignment at sc0000028:536054..537761 (Clytia hemisphaerica)
aggACTTTAAATTTATCATACATTGTGAATTAAATTAGGAGAGAATACTT
TGAGCACCATGTTTTCATTCAACGATTTTGTCGAATGGGTTGCAACAAAT
CGTCAGTCATTACAAACCATGTTGATTATgcgtaaaaatacaaaatttac
tttgatttgGATAACTTTTGTCATTGGTTCATTTTTGCATGACTATTTCC
CACTACCGGCATCTTACTTTTCCAACAGTAAGAactttttcaatgtttat
tttgtGAAGAAAGGATGGGGTTGGACTGTCATCTTGCTCTCTGCTTATAT
CACAAGTCTACTGATTAAACAAAAAGTCAACAACTGGCGTACATTTTACA
AACATTTGTCCAGGCTTGGAGTCTGTACCGTGTTATGGTTTGTTTTTACA
AAGGGATTTGAAATTATTGAGAATCTAACTGGTACGTGTGTTGGTGGAAG
TGAGCTATCATCAAAACAAATCTGCCATCGGAATGATTACATCTGGAATG
GATTTGATATTTCCGGACACTGTTTTCTACTCACTTTCTGTATAATGATC
ATAAATGAAGAATTAAACTGTTCTACCAATATTGTGACGTGTAATCATAA
TGGTGTCACTCAACCTGCCGATCCCCAACGTGGCAAAGGTGTCAGGTACG
TCCTCGGTGTACCCATACGTGAAGAGGTCTTCGAGAATCTAATCGAAGGA
CTTAGTATGATGCTTATTTTATTGATGTTGTTATGGGAAATCATGTTATT
TTTCACTTGTTTATATTTCCATACATTGTCTCAGAAACTTCTTGGTTTTG
CCATGGGTGCTGGATGCTTTTACGCTGCTTATGAATGTCTATTCAAGATT
AGCCACAGATATATTCCTTGCACACCTTCGATGATCGCGGAATTGAATCA
TGAATCATAGGAATGGAAATGAAACGAGGAAGATTGGAAATTATTACTAT
CTTTAGATATTCTGGTATATGATTGTCACAGTCATGGCGCTAATGTTTAT
TCAATGGGTTACTGAATCAAAGAATAATGTTTCGGTAGAGAATCATACTA
ACTATTAAACCACCAAAGGACCCacattagcgagattatgtatctggaat
tctctacgccTACGGCTGCGGTTAAAGTGGCGAGACAGGGCGAGGAAAAt
tgcgagtaaggcaagtaatggcgggtgaaagcaagctcgagatttgacgt
acggcattatgtcgactttgcttatacagtgttttggtgtttttcctgta
cagagcaaagtagacaacaacatgtcgcctttggtgacgacctGCATGGG
TAGCCCTGTAActgtagccgtagaatatcaccaatacataatctcgctat
tgtCATTCTCAGACGTTAAAGTGATGATGCATGTAAATGGTTTTTGGCTT
TGGATTAtttattgaactttttttttcaaatactaAATTTATCATTGTTA
ATAACACTGAGGCAGATTATTAGTTTCTTGAACCAATTCTATTTTATTGA
TTATTTCAAACATAGGACATTATATATCCCTATTTGACTATCCCCCCTTT
TCATTACCTACCTATTAGGAGGCCTCATTTTCTTACCCCCTCCCTTGTGT
CATTTCCCCCTTTTTACCTTCTCCTCCTCCCCTTccttttgatcattttt
gagaatgccccccccccaaaaaaaaggaAGTCTCAAACTAGGAAAGCCaa
cacaaact

Coding sequence (CDS) from alignment at sc0000028:536054..537761

>TCONS_00003523 ID=TCONS_00003523|Name=TCONS_00003523|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000028:536054..537761 (Clytia hemisphaerica)
ATGTTTTCATTCAACGATTTTGTCGAATGGGTTGCAACAAATCGTCAGTC
ATTACAAACCATGTTGATTATgcgtaaaaatacaaaatttactttgattt
gGATAACTTTTGTCATTGGTTCATTTTTGCATGACTATTTCCCACTACCG
GCATCTTACTTTTCCAACAGTAAGAactttttcaatgtttattttgtGAA
GAAAGGATGGGGTTGGACTGTCATCTTGCTCTCTGCTTATATCACAAGTC
TACTGATTAAACAAAAAGTCAACAACTGGCGTACATTTTACAAACATTTG
TCCAGGCTTGGAGTCTGTACCGTGTTATGGTTTGTTTTTACAAAGGGATT
TGAAATTATTGAGAATCTAACTGGTACGTGTGTTGGTGGAAGTGAGCTAT
CATCAAAACAAATCTGCCATCGGAATGATTACATCTGGAATGGATTTGAT
ATTTCCGGACACTGTTTTCTACTCACTTTCTGTATAATGATCATAAATGA
AGAATTAAACTGTTCTACCAATATTGTGACGTGTAATCATAATGGTGTCA
CTCAACCTGCCGATCCCCAACGTGGCAAAGGTGTCAGGTACGTCCTCGGT
GTACCCATACGTGAAGAGGTCTTCGAGAATCTAATCGAAGGACTTAGTAT
GATGCTTATTTTATTGATGTTGTTATGGGAAATCATGTTATTTTTCACTT
GTTTATATTTCCATACATTGTCTCAGAAACTTCTTGGTTTTGCCATGGGT
GCTGGATGCTTTTACGCTGCTTATGAATGTCTATTCAAGATTAGCCACAG
ATATATTCCTTGCACACCTTCGATGATCGCGGAATTGAATCATGAATCAT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001965XLOC_001965Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003523-proteinTCONS_00003523-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003523-exon-sc0000028-1491911889:536054..537761TCONS_00003523-exon-sc0000028-1491911889:536054..537761Clytia hemisphaericaexon
TCONS_00003523-exon-sc0000028-1510915933:536054..537761TCONS_00003523-exon-sc0000028-1510915933:536054..537761Clytia hemisphaericaexon
TCONS_00003523-exon-sc0000028-1575043694:536054..537761TCONS_00003523-exon-sc0000028-1575043694:536054..537761Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:536054..537761 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.2537	14.5531	11.3544	9.43535	28.0232	20.3594	14.1492	16.0469	6.14283	9.3105	8.77612	3.84605	4.951	4.74056	5.75642	6.58132	8.46543	6.15048	3.97515	10.3555	6.01828	5.89333	20.6698	17.6153	7.06415	9.43429	14.7249	14.3041	25.3498	23.3651
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019388FIT
Vocabulary: Cellular Component
TermDefinition
GO:0005789endoplasmic reticulum membrane
Vocabulary: Biological Process
TermDefinition
GO:0019915lipid storage
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019915 lipid storage
cellular_component GO:0005789 endoplasmic reticulum membrane
Blast
[Close]
BLAST of TCONS_00003523 vs. Swiss-Prot (Human)
Match: FITM2 (Fat storage-inducing transmembrane protein 2 OS=Homo sapiens GN=FITM2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.972e-27
Identity = 87/272 (31.99%), Postives = 119/272 (43.75%), Query Frame = -2 
Query:  811 IMRKNTKFTLIWI---TFVIGSFLHDYFPLPASYFSNSKNFFNVYFVKKGWGWTVILLSAYITSLLIKQKVNNWRTFYKHLSRLGVCTVLWFVFTKGFEIIENLTGTCVGGSELS-------SKQICHRNDYIWNGFDISGHCFLLTFCIMIINEELNCSTNIVT----CNHNGVTQPADPQRGKGVRYVLGVPIREEVFENXXXXXXXXXXXXXXXXXXXLFFTCLYFHTLSQKLLGFAMGAGCFYAAYECLFKISHRYIPCTPSMIAELN 1584
            ++R   +  L W    + + GS L +  PLP SY SN +N  NVYFVK  W WT  LL  +I +L             + LS L V T +W++ T  F  IE+ TG+C     L        SKQ CH+    W+GFDISGH FLLTFC ++I EE++    + T    C H  +T             V+ + I   ++                   +M   T +YFH LSQK+ G   G   +Y  Y   F     + P  P     LN
Sbjct:   15 LVRAAVRRYLPWALVASMLAGSLLKELSPLPESYLSNKRNVLNVYFVKVAWAWTFCLLLPFI-ALTNYHLTGKAGLVLRRLSTLLVGTAIWYICTSIFSNIEHYTGSCYQSPALEGVRKEHQSKQQCHQEGGFWHGFDISGHSFLLTFCALMIVEEMSVLHEVKTDRSHCLHTAITT-----------LVVALGILTFIW------------------VLMFLCTAVYFHNLSQKVFGTLFGLLSWYGTYG--FWYPKAFSPGLPPQSCSLN 254
The following BLAST results are available for this feature:
BLAST of TCONS_00003523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FITM21.972e-2731.99Fat storage-inducing transmembrane protein 2 OS=Ho... [more]
back to top