TCONS_00003524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003524
Unique NameTCONS_00003524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003524 ID=TCONS_00003524|Name=TCONS_00003524|organism=Clytia hemisphaerica|type=transcript|length=546bp
ATATTTACCAGCTATTCGTGCAAAAAAATATGTAAGAAAAAATCCGATAC
ATTTCCAGTattttcggctggaaaaaactttcatgaAAAATAGGACTCAC
ATTTTAAGGTATTGCTTAAATGCATCTTTGtgttacaaatttgaaaaaaa
ctaataaaccaATCCCGAGAAAACCTTGCATCAGACGGACGGACGAGCAA
ATGttaattttaagtaaaatacctccaggtaggtccaaaagggATCTTTG
ATCATATCAAATTTAATCTACTTTTTCCGAACACACTGTAAGAACAAAGA
AggcaattttgcaattttaggaTCGATATCAATAAATTGAAGGACAAATC
AGTTCCAGCCgtaataaaaaaacattgaataaaATGAATATACTTCAAat
gttgataaatttgtctGCAAAATCCTAATATTATAAAATCTTTCTCCTAG
AAATTCgttaaaatatgataaaaatgaaaatgctaggCTATAATTTGCAC
ACTATACTATTTTCTTCTACGAtgcataaaaaatcaaaccctATTA
Run BLAST on NCBI

transcript from alignment at sc0000028:537883..538428

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003524 ID=TCONS_00003524|Name=TCONS_00003524|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at sc0000028:537883..538428 (Clytia hemisphaerica)
TAATagggtttgattttttatgcaTCGTAGAAGAAAATAGTATAGTGTGC
AAATTATAGcctagcattttcatttttatcatattttaacGAATTTCTAG
GAGAAAGATTTTATAATATTAGGATTTTGCagacaaatttatcaacatTT
GAAGTATATTCATtttattcaatgtttttttattacGGCTGGAACTGATT
TGTCCTTCAATTTATTGATATCGAtcctaaaattgcaaaattgccTTCTT
TGTTCTTACAGTGTGTTCGGAAAAAGTAGATTAAATTTGATATGATCAAA
GATcccttttggacctacctggaggtattttacttaaaattaaCATTTGC
TCGTCCGTCCGTCTGATGCAAGGTTTTCTCGGGATtggtttattagtttt
tttcaaatttgtaacaCAAAGATGCATTTAAGCAATACCTTAAAATGTGA
GTCCTATTTTtcatgaaagttttttccagccgaaaatACTGGAAATGTAT
CGGATTTTTTCTTACATATTTTTTTGCACGAATAGCTGGTAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001966XLOC_001966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003524-exon-sc0000028-1491911889:537883..538428TCONS_00003524-exon-sc0000028-1491911889:537883..538428Clytia hemisphaericaexon
TCONS_00003524-exon-sc0000028-1510915933:537883..538428TCONS_00003524-exon-sc0000028-1510915933:537883..538428Clytia hemisphaericaexon
TCONS_00003524-exon-sc0000028-1575043694:537883..538428TCONS_00003524-exon-sc0000028-1575043694:537883..538428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:537883..538428 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.21055	0.10266	0.238396	0.34985	0.851817	0.673117	0.270696	0.380133	0.0887134	0	0.106658	0.350563	0.0700152	0.508981	0.0597787	0.256607	0.395148	0.0810029	0	0	0	0.297886	0.965652	0.438959	0.226059	0.403504	0.866119	0.61623	1.28532	1.42859
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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