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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003569 ID=TCONS_00003569|Name=TCONS_00003569|organism=Clytia hemisphaerica|type=transcript|length=729bp
GCTCGAATAGAAATTCTTTAGATATCATAAATAAGAATTCTTTATCATGA
TTATTTGAGTATTTGCACAAAGAAAGAAATATAAAGTTTAGAACTGCTGT
TATATCCATGTTTTTATTAATCAGCTAACCTAGACATTAAATAATTTCAT
ATGTGAGTGAAAATCTTCACATCTAATTTTGTTTGTTATTCGATTTTTTG
GTTAATATGAGATTGAGTTTGTTATGGCAGAGAAGTTTCAGTTCATGTCG
TTGGATATGGATGTTTTTACTGGCTGTTTACATACAAGAGATCTTGGCGT
CGTCACCGAAAAATGGTACAACAGAAAGCTCGTCTGACCACGAAGATGAA
GATAACCATGGACGTGTTTCAATTACTTTCACCAACGATCAAATTTACAT
TGTGATTGGAATCGTCCTTACATTGTACCTAATTGGATATTTCCTTATTc
tTTTTGCAGCGGGTGGTTTCGATCTAATTGACGAAGATCAAGTCAAATTT
CGTGTGACCGCTCAGACAGCACGGAAACCAGGCGAACGACATGTCACCAA
ATTAAAAGAGAAAACTGTCAAGAAAAACAACTGAGCTGGGAAGGACGTTT
TAATATGAATGGTCGGACGTTCCCGGTTGAAAGAATCAAACTCCTCAAAA
TCCCCAATGACTACAGAACAGCAAAAGTATTTGGATTTTGGCAACTTTCG
AACATTGTGAAACAGACACAAAGACTTTT Run BLAST on NCBI protein sequence of TCONS_00003569-protein >TCONS_00003569-protein ID=TCONS_00003569-protein|Name=TCONS_00003569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MRLSLLWQRSFSSCRWIWMFLLAVYIQEILASSPKNGTTESSSDHEDEDN
HGRVSITFTNDQIYIVIGIVLTLYLIGYFLILFAAGGFDLIDEDQVKFRV
TAQTARKPGERHVTKLKEKTVKKNN Run BLAST on NCBI transcript from alignment at sc0000030:671266..672943+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003569 ID=TCONS_00003569|Name=TCONS_00003569|organism=Clytia hemisphaerica|type=transcript|length=1678bp|location=Sequence derived from alignment at sc0000030:671266..672943+ (Clytia hemisphaerica)
GCTCGAATAGAAATTCTTTAGATATCATAAATAAGAATTCTTTATCATGA
TTATTTGAGTATTTGCACAAAGAAAGAAATATAAAGTTTAGAACTGCTGT
TATATCCATGTTTTTATTAATCAGCTAACCTAGACATTAAATAATTTCAT
ATGTGAGTGAAAATCTTCACATCTAATTTTGTTTGTTATTCGATTTTTTG
GTTAATATGAGATTGAGTTTGTTATGGCAGAGAAGTTTCAGTTCATGTCG
TTGGATATGGATGTTTTTACTGGCTGTTTACATACAAGAGGTactgtttt
tcaaattttttaatcagACTTTATTCTGGCTAAACGTGGCAAAGTGGTAT
GGAAGATAAAAATGATTCATTTACTTTGAATAAAGGTTTACTACTTTTTA
ACCAACAAAATGCATAggttgaactttcaattttgccaaaaattgtCATA
TTTGATTTCATGTTTGATTGAGTCTGTGATTGAGTTCAATCGATGATATC
TTTGACACATTACAGTACCCAACAAGTGTACAATTCTATAAATTTTCCCA
TCTTTCATAACAACCTCTTCAAACAACAGATCTTGGCGTCGTCACCGAAA
AATGGTACAACAGAAAGCTCGTCTGACCACGAAGATGAAGATAACCATGG
ACGTGTTTCAATTACTTTCACCAACGATCAAATTTACATTGTGATTGGAA
TCGTCCTTACATTGTACCTAATTGGATATTTCCTTATTGTGAGTTGAACT
TTGCTATCTCATGATTTTTATTACACAAAAATaacatagtttctaccccc
cccccccccttttggggggggggggggcctttttttttcccccccccccc
ccacattTAGGAGGGGGGTCTTGCATTTTGATGACCCATACACCGAGGGA
GGGGTGCTGTTGAAAGTTTAAATTCCCTAAGGGGATTGCCAGTtaaggaa
aatgaaattatgtacaaagatttcaaaattttaagcaattttaaaggGAT
GGACTGAAATTTCTTTAGAATgtcctaagggggggggggtctgaattttc
aaatgtttttcctAAGGGGGTTACCACATAAGGGGGTTCTTCCTTCCAAA
GGaagtttttctctaaaaaaggaCTCGATCTAGCACTCAAACAAAGCTAA
AAATAGGAACACCCAGTCCATGTTCTCCTGGCTGTGAACCGATGTTCTAA
AGTTGGGTTTTCAAGTACACGACcttttatttcttaaattacaTTGTTAG
TGCTAAACGACTATCCTGAAATTCGCAGGAAATACGTTTTACTTTAGGAA
TCTAAGAATCAGAGTGCCATATTTTAAAAGCTTCCTTCAAGGTACACCTC
TATCTGCTCTTGATGGACGCCAActctttatttaatttttttttctagct
TTTTGCAGCGGGTGGTTTCGATCTAATTGACGAAGATCAAGTCAAATTTC
GTGTGACCGCTCAGACAGCACGGAAACCAGGCGAACGACATGTCACCAAA
TTAAAAGAGAAAACTGTCAAGAAAAACAACTGAGCTGGGAAGGACGTTTT
AATATGAATGGTCGGACGTTCCCGGTTGAAAGAATCAAACTCCTCAAAAT
CCCCAATGACTACAGAACAGCAAAAGTATTTGGATTTTGGCAACTTTCGA
ACATTGTGAAACAGACACAAAGACTTTT Coding sequence (CDS) from alignment at sc0000030:671266..672943+ >TCONS_00003569 ID=TCONS_00003569|Name=TCONS_00003569|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000030:671266..672943+ (Clytia hemisphaerica)
ATGAGATTGAGTTTGTTATGGCAGAGAAGTTTCAGTTCATGTCGTTGGAT
ATGGATGTTTTTACTGGCTGTTTACATACAAGAGATCTTGGCGTCGTCAC
CGAAAAATGGTACAACAGAAAGCTCGTCTGACCACGAAGATGAAGATAAC
CATGGACGTGTTTCAATTACTTTCACCAACGATCAAATTTACATTGTGAT
TGGAATCGTCCTTACATTGTACCTAATTGGATATTTCCTTATTctTTTTG
CAGCGGGTGGTTTCGATCTAATTGACGAAGATCAAGTCAAATTTCGTGTG
ACCGCTCAGACAGCACGGAAACCAGGCGAACGACATGTCACCAAATTAAA
AGAGAAAACTGTCAAGAAAAACAACTGAATGAGATTGAGTTTGTTATGGC
AGAGAAGTTTCAGTTCATGTCGTTGGATATGGATGTTTTTACTGGCTGTT
TACATACAAGAGATCTTGGCGTCGTCACCGAAAAATGGTACAACAGAAAG
CTCGTCTGACCACGAAGATGAAGATAACCATGGACGTGTTTCAATTACTT
TCACCAACGATCAAATTTACATTGTGATTGGAATCGTCCTTACATTGTAC
CTAATTGGATATTTCCTTATTctTTTTGCAGCGGGTGGTTTCGATCTAAT
TGACGAAGATCAAGTCAAATTTCGTGTGACCGCTCAGACAGCACGGAAAC
CAGGCGAACGACATGTCACCAAATTAAAAGAGAAAACTGTCAAGAAAAAC
AACTGAATGAGATTGAGTTTGTTATGGCAGAGAAGTTTCAGTTCATGTCG
TTGGATATGGATGTTTTTACTGGCTGTTTACATACAAGAGATCTTGGCGT
CGTCACCGAAAAATGGTACAACAGAAAGCTCGTCTGACCACGAAGATGAA
GATAACCATGGACGTGTTTCAATTACTTTCACCAACGATCAAATTTACAT
TGTGATTGGAATCGTCCTTACATTGTACCTAATTGGATATTTCCTTATTc
tTTTTGCAGCGGGTGGTTTCGATCTAATTGACGAAGATCAAGTCAAATTT
CGTGTGACCGCTCAGACAGCACGGAAACCAGGCGAACGACATGTCACCAA
ATTAAAAGAGAAAACTGTCAAGAAAAACAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003569-exon-sc0000030-1491911889:671266..671555 | TCONS_00003569-exon-sc0000030-1491911889:671266..671555 | Clytia hemisphaerica | exon |
| TCONS_00003569-exon-sc0000030-1510915933:671266..671555 | TCONS_00003569-exon-sc0000030-1510915933:671266..671555 | Clytia hemisphaerica | exon |
| TCONS_00003569-exon-sc0000030-1575043694:671266..671555 | TCONS_00003569-exon-sc0000030-1575043694:671266..671555 | Clytia hemisphaerica | exon |
| TCONS_00003569-exon-sc0000030-1491911889:671845..672003 | TCONS_00003569-exon-sc0000030-1491911889:671845..672003 | Clytia hemisphaerica | exon |
| TCONS_00003569-exon-sc0000030-1510915933:671845..672003 | TCONS_00003569-exon-sc0000030-1510915933:671845..672003 | Clytia hemisphaerica | exon |
| TCONS_00003569-exon-sc0000030-1575043694:671845..672003 | TCONS_00003569-exon-sc0000030-1575043694:671845..672003 | Clytia hemisphaerica | exon |
| TCONS_00003569-exon-sc0000030-1491911889:672664..672943 | TCONS_00003569-exon-sc0000030-1491911889:672664..672943 | Clytia hemisphaerica | exon |
| TCONS_00003569-exon-sc0000030-1510915933:672664..672943 | TCONS_00003569-exon-sc0000030-1510915933:672664..672943 | Clytia hemisphaerica | exon |
| TCONS_00003569-exon-sc0000030-1575043694:672664..672943 | TCONS_00003569-exon-sc0000030-1575043694:672664..672943 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:671266..672943 + |
Blast
The following BLAST results are available for this feature:
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