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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003647 ID=TCONS_00003647|Name=TCONS_00003647|organism=Clytia hemisphaerica|type=transcript|length=2674bp
ATCTTCACACGTATTCTGGCTGTTGCTACAAGTAATATGGCCATCGCAGA
ATTCCATCCTAAAGTTTATGCGTTGGGTTTGATTGTAATTTGGTTGCGTT
TCATGAGATCGTGTCGTGTGTTTCAAACGCTTGGTCCTTTCATTGCTATT
TTGGGCTCAGTCGTTGTGGACACAgccaaattttcatttttgttgttcGA
GTTTTTCATCCCTTACACCGTTGGATTCTGGATAATCTTTGGAGGACCTG
AAAATGCTTCCAAGATGATCAAAAACGACTGGGAGAATTTCAATGACCTG
ACCTTCAGTGTTTTTGGGATGACTCTAATGGATAACTATGATTTCAATGG
ATTGGTTGCAGTTGATCGTTTGATGGCTCAAATCTTATGTGGAAGTTATT
TAGCACTAGCCGGAGTGGTCTGCTTAAACATGTACATCGCCCTGCTATCA
GATACATTCGCTCGTGTTTACTCCCAGGCTAAAGCAACAGCTGTCATGCA
ACAGGCTAAGACAATAATTGCGCTGGAAGGAAAACTTAATAAATTTCACA
AATCGAAATATGCTCATTACATGCTTCGAGAGTGCTCGCCTCAGGAAGTA
TACACGCGTGATGAATCAAGCGAAGATGGCAGCTATGAAGGAGAGCAATT
TGATCGCATCGGGCGCCAAATTGCAAAACGAATCGACACCTTGGAGGAGA
ACATCATTCTGCGATACAACCGTAACAGCGGTAGAAAACAAAAAAGCAGt
gacaatcaaaacaacaaaacagaATCTGGTCAAAAGAAGAATTTCCCGAA
CCGCCTTTCTTATTCTTCTTTCATGGATGGCGACAACTCAAGTAATGACA
GCGATGGCGGACCGCCCCCTTTCGGAGAGGCGGTTGGTAGAGGTTCATCG
GGTTGTAAACAACAGATCAAAAAAGTAGCAGAATTCCAACGGGAACAATT
TAATGACCTACAAGATGAGATTGCCAATATCAGATCAATTTTATCGAATA
TTTCTTCGTTATTGTTAGCACAGCAAGGGGATAACCAAGCAGTGGTTGCT
TTACCAAAATTGAATGCAGCCCCTTCAGAATTTGCCTATCCACCGCCAGA
TGCTCCCTTTACCCCATCTGCTATTGGCTACCCACCACCAGAAGCCCCTT
TTACTCCATCTGCTATCGGCTACCCACCCCCTGCTACCTCCTTTTCGAAG
TCTCCTGCCCTCTATCCACCAACTGTTGACGATAACAACAACTCAATATT
TGAGTCACAGTCAACCCTGGTCGAATCGCCTACTCAAGCGGTGACCCCAC
CTCCAGAGATAGCTGACATTATCAATTCAGTAGGCTCCCTCATGAATGCT
GATCAAACAGAAACCAACCAGTTTACTCACAAGAAGACCCCTCCCTCCAG
TGACGGGACAGCCACTCCAGTCATGAAACCGAAAACAAATCCTCGTCCTG
TACCTACTCCTCGAGGCAGAACACAGAGCAATGGAACCCATCCACCACGA
CCTTCCCCAAGTCTTGCTCGATCCATCTCAACCAACAGCCCTCTCTACCC
ACCTTTGGTTGAAGACCAAGATTTCGGCTTCCCGCCACCTTCGATCAACG
TATCCACCCCTGTTATCAACAAGAAACGCTTCAACGAAAGCTTTGATGAA
GACCTTCGAAGCCAAACCCTACCTTTGATTGATCGCTCGAAAGGCCCCAA
TAGAAGTAAATCTGTATCCAACGTTGCTGTTATGGATTCTCCTCTCCTTG
ATGCTGATGATGCATCGGGATATCAATCTCTACCAAGATCATCAAGTGGA
CGAAGGCGGAGACGAAAGAAAACGCCTTCACCTCACCCAAATAAAAATGA
TTATCAATTGTTCTCAAATGGAAATGGATCAGTCATGTCAAAATCAACTG
AAATGCTTTGAAAATATAACGATAAAAAGACGATAACGATAAAAATTTGA
CGTTTAAACGACTTCGAGTTCGTTGTGTCGTGAAAAAGATAATTTAGTAT
GTTGTCCAAAATTTGACCAATAacccctcttctcacagacccggaaAGAT
TTTTCCAGCCAGTCGGGGTAAAAATTAATAGACTGAGAGTTGATGAGGAT
TGATAgtcccatgttttttatggtataggatttgaattccattttttcaa
gtcagagaatagaccttttcataaattacgtcacaaacatcaattGCCTC
GTTtcaaaattattgccatggtgattaactcccagcggattttattaaag
ctactttttatttatagaaaaatcatttaatgtctcaagggacatagtca
ccatggtaattgtttgaatacaaggcaagtgatgttcgtgacgtaattta
ttaaaaggcctattcagtggggatggaaataATGGCATAATATTTTACat
tgaggatttgcttatctgattattttcatcggggacaaaaattgaagtaT
AATTTCAGCTAGGGacgagaagggggtgtaatcaCGAGATATTGGCTTTC
TTGAATGCTGGATCATTGGTGGTAATGTTCGAGTTTGTGGGACTGTTACA
TATTTCGTTAACAACAATACGATATAAAGATGTGTTCCAAAATAGTCGCa
ctaaagcttttttcacatgtacgtaaaatctTACTTTAGACCTTACGAAA
AATCattcgtaaggctgtcttttg Run BLAST on NCBI transcript from alignment at sc0000030:537352..541800- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003647 ID=TCONS_00003647|Name=TCONS_00003647|organism=Clytia hemisphaerica|type=transcript|length=4449bp|location=Sequence derived from alignment at sc0000030:537352..541800- (Clytia hemisphaerica)
ATCTTCACACGTATTCTGGCTGTTGCTACAAGTAATATGGCCATCGCAGA
ATTCCATCCTAAAGTTTATGCGTTGGGTTTGATTGTAATTTGGTTGCGTT
TCATGAGATCGTGTCGTGTGTTTCAAACGCTTGGTCCTTTCATTGCTATT
TTGGGTAAGTTGTTATTTTTAAAGGTGGAGTTATTTCACAACAAAAGTCT
TAATGAAGCATTTCTACCTCAACATTCTCAATAGCTTGAACTGCTTTGAC
CACTGTATAGATATTCATTGCTATCCTTGGTAAGCTATATAGTTTAAAAG
TTTAGAATTTGCTTTAAGTAACTATTGCTTCTACTCTGTTGATTAGTAGA
AAGGATTCGATCACAGATTCGCACCTCACTGGACTGTGCTCGAATCCCAA
GCACTTCCAAAGAGTGTTAGGGAATCACTACTTTTAGCTATAACTTTTAT
GAAAACTAGCTTTCTTATCTTAAAAAAAGACCATCAGAATCCGCTGATTT
GTTGGAGATAATTATATCTCCGAAAATGATTCTCAAAAGAGTTTTTCTGA
TTGATGTTGTTCTTTGTACTAAAATATCTAGCCATTGTAATTCCTATACC
TTTTTATTCACCAGGCTCAGTCGTTGTGGACACAGCCAAATTTTCATTTT
TGTTGTTCGAGTTTTTCATCCCTTACACCGTTGGATTCTGGATAATCTTT
GGAGGACCTGAAAATGCTTCCAAGATGATCAAAAACGACTGGGAGAATTT
CAATGACCTGACCTTCAGTGTTTTTGGGGTGAGTTTGTGTTGTTAATTCT
TTGTTTGGATTTTTCTAGATGTGAGGTCACGTTGAAATTTGTAATTCGAT
TGCTAATGAAAGGACCTTTAAAATCCGGAGCTTGTTCAACTATTTATGCC
ATAAAATTTTTTTCTAAAGTTCGTCTCACTTTCTATACCCTATTCTCACA
GATCCAATGGGACCCCTTCCCACTGGAAAAATTGACCAAAACATCGTCCC
CGGTAGAAATTCATTCTCCAATTTTTGTCCCCACTGACAATTATCAAATA
AACCAATTCTCACTGCAAAGTATTATGCAATTTTTTCATCCCACTGAATT
TTCTGATTCGATAACAAAAGATAAGAAATCCCCAGTCATAAAAAATATAG
GAATGTCAATCCCCATCGAGTTTCAGTCCGTTATTTTTTTCCCCACTGGC
TGAAAAGATCCTACCGGTTCTGTGAGAAGAGGGTGTCTTTTTTAACAATT
TCTCAGCACCCATTTTAATTTATGGCATTTTAAAAAACTATTCACCGTTG
GAAAGATATTTAAAAGAAGAGTAATCTAAAAGATAAGAGATATTTGAGAT
GTTGAAAAAGAAGAAGAAACCAAACACAAATTGAACAAAATTTGAAATCA
GTAAGGTTAAAAGATTCTAAAGATTATCTATCTATCTATTAGATTATTCT
CCTTGGAAATATCTTTCCAACATGGTGTATAGCTTTTCAATATAGCATAA
ATTCGTGGTGTGAAATGGTTAAAAAAGTGTTCATATTTTGAAACAGACTT
CAGTACTTCAAAATATTCTTTCTTGATTTAGATGACTCTAATGGATAACT
ATGATTTCAATGGATTGGTTGCAGTTGATCGTTTGATGGCTCAAATCTTA
TGTGGAAGTTATTTAGCACTAGCCGGAGTGGTCTGCTTAAACATGTACAT
CGCCCTGCTATCAGATACATTCGCTCGTGTTTACTCCCAGGCTAAAGCAA
CAGCTGTCATGCAACAGGCTAAGACAATAATTGCGCTGGAAGGAAAACTT
AATAAATTTCACAAATCGAAATATGCTCATTACATGCTTCGAGAGTGCTC
GCCTCAGGTTAGTTTAACACTTAATCCGGAAAGATTTCGCTACAACTGGG
GAGGGGGTACTGGATTTGCGAGGTAACAGATATGTCCGACCCAAAGTTCA
AAAATCGACTCTTTGAGAGAACGAATTTGGACGGTTTTGTGATCCTTTGA
GAGGTTTTTTTTCCTCCAATTTTTAGCCCAAAATTACAAGATTCCATGAC
CCTTTGAGGGTAGATTTTTCGATATTTCGTAATTTTGGGATCCTTTTAGA
GATTTTATTGATAATCTATCGTTTTTGTACCCCTTTGAGAGACTTTCGTG
GGCTTACAAAAGGAAACCTTATGGCTCGCTAAACTCACGTTTTCTGTATC
TGTATCAAATGATGATTGAAAAAAAAGGTTTGCATATAAAAGTTGTTATC
GATTACCCAGATGAAAATGAGCGAATAATACGAAGACGGGTTAAAAAAAG
TGGATCTAACTGTTAGAATCCTTATATTATTCTATTCTAAGTAAAGCTCT
GGATCTTCTTTTTACACAGGAAGTATACACGCGTGATGAATCAAGCGAAG
ATGGCAGCTATGAAGGAGAGCAATTTGATCGCATCGGGCGCCAAATTGCA
AAACGAATCGACACCTTGGAGGAGAACATCATTCTGCGATACAACCGTAA
CAGCGGTAGAAAACAAAAAAGCAGTGACAATCAAAACAACAAAACAGAAT
CTGGTCAAAAGAAGAATTTCCCGAACCGCCTTTCTTATTCTTCTTTCATG
GATGGCGACAACTCAAGTAATGACAGCGATGGCGGACCGCCCCCTTTCGG
AGAGGCGGTTGGTAGAGGTTCATCGGGTTGTAAACAACAGATCAAAAAAG
TAGCAGAATTCCAACGGGAACAATTTAATGACCTACAAGATGAGATTGCC
AATATCAGATCAATTTTATCGAATATTTCTTCGTTATTGTTAGCACAGCA
AGGGGATAACCAAGCAGTGGTTGCTTTACCAAAATTGAATGCAGCCCCTT
CAGAATTTGCCTATCCACCGCCAGATGCTCCCTTTACCCCATCTGCTATT
GGCTACCCACCACCAGAAGCCCCTTTTACTCCATCTGCTATCGGCTACCC
ACCCCCTGCTACCTCCTTTTCGAAGTCTCCTGCCCTCTATCCACCAACTG
TTGACGATAACAACAACTCAATATTTGAGTCACAGTCAACCCTGGTCGAA
TCGCCTACTCAAGCGGTGACCCCACCTCCAGAGATAGCTGACATTATCAA
TTCAGTAGGCTCCCTCATGAATGCTGATCAAACAGAAACCAACCAGTTTA
CTCACAAGAAGACCCCTCCCTCCAGTGACGGGACAGCCACTCCAGTCATG
AAACCGAAAACAAATCCTCGTCCTGTACCTACTCCTCGAGGCAGAACACA
GAGCAATGGAACCCATCCACCACGACCTTCCCCAAGTCTTGCTCGATCCA
TCTCAACCAACAGCCCTCTCTACCCACCTTTGGTTGAAGACCAAGATTTC
GGCTTCCCGCCACCTTCGATCAACGTATCCACCCCTGTTATCAACAAGAA
ACGCTTCAACGAAAGCTTTGATGAAGACCTTCGAAGCCAAACCCTACCTT
TGATTGATCGCTCGAAAGGCCCCAATAGAAGTAAATCTGTATCCAACGTT
GCTGTTATGGATTCTCCTCTCCTTGATGCTGATGATGCATCGGGATATCA
ATCTCTACCAAGATCATCAAGTGGACGAAGGCGGAGACGAAAGAAAACGC
CTTCACCTCACCCAAATAAAAATGATTATCAATTGTTCTCAAATGGAAAT
GGATCAGTCATGTCAAAATCAACTGAAATGCTTTGAAAATATAACGATAA
AAAGACGATAACGATAAAAATTTGACGTTTAAACGACTTCGAGTTCGTTG
TGTCGTGAAAAAGATAATTTAGTATGTTGTCCAAAATTTGACCAATAACC
CCTCTTCTCACAGACCCGGAAAGATTTTTCCAGCCAGTCGGGGTAAAAAT
TAATAGACTGAGAGTTGATGAGGATTGATAGTCCCATGTTTTTTATGGTA
TAGGATTTGAATTCCATTTTTTCAAGTCAGAGAATAGACCTTTTCATAAA
TTACGTCACAAACATCAATTGCCTCGTTTCAAAATTATTGCCATGGTGAT
TAACTCCCAGCGGATTTTATTAAAGCTACTTTTTATTTATAGAAAAATCA
TTTAATGTCTCAAGGGACATAGTCACCATGGTAATTGTTTGAATACAAGG
CAAGTGATGTTCGTGACGTAATTTATTAAAAGGCCTATTCAGTGGGGATG
GAAATAATGGCATAATATTTTACATTGAGGATTTGCTTATCTGATTATTT
TCATCGGGGACAAAAATTGAAGTATAATTTCAGCTAGGGACGAGAAGGGG
GTGTAATCACGAGATATTGGCTTTCTTGAATGCTGGATCATTGGTGGTAA
TGTTCGAGTTTGTGGGACTGTTACATATTTCGTTAACAACAATACGATAT
AAAGATGTGTTCCAAAATAGTCGCACTAAAGCTTTTTTCACATGTACGTA
AAATCTTACTTTAGACCTTACGAAAAATCATTCGTAAGGCTGTCTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003647-exon-sc0000030-1575043694:541647..541800 | TCONS_00003647-exon-sc0000030-1575043694:541647..541800 | Clytia hemisphaerica | exon |
| TCONS_00003647-exon-sc0000030-1575043694:541023..541186 | TCONS_00003647-exon-sc0000030-1575043694:541023..541186 | Clytia hemisphaerica | exon |
| TCONS_00003647-exon-sc0000030-1575043694:539944..540219 | TCONS_00003647-exon-sc0000030-1575043694:539944..540219 | Clytia hemisphaerica | exon |
| TCONS_00003647-exon-sc0000030-1575043694:537352..539431 | TCONS_00003647-exon-sc0000030-1575043694:537352..539431 | Clytia hemisphaerica | exon |
| TCONS_00003647-exon-sc0000030-1510915933:541647..541800 | TCONS_00003647-exon-sc0000030-1510915933:541647..541800 | Clytia hemisphaerica | exon |
| TCONS_00003647-exon-sc0000030-1510915933:541023..541186 | TCONS_00003647-exon-sc0000030-1510915933:541023..541186 | Clytia hemisphaerica | exon |
| TCONS_00003647-exon-sc0000030-1510915933:539944..540219 | TCONS_00003647-exon-sc0000030-1510915933:539944..540219 | Clytia hemisphaerica | exon |
| TCONS_00003647-exon-sc0000030-1510915933:537352..539431 | TCONS_00003647-exon-sc0000030-1510915933:537352..539431 | Clytia hemisphaerica | exon |
| TCONS_00003647-exon-sc0000030-1491911889:541647..541800 | TCONS_00003647-exon-sc0000030-1491911889:541647..541800 | Clytia hemisphaerica | exon |
| TCONS_00003647-exon-sc0000030-1491911889:541023..541186 | TCONS_00003647-exon-sc0000030-1491911889:541023..541186 | Clytia hemisphaerica | exon |
| TCONS_00003647-exon-sc0000030-1491911889:539944..540219 | TCONS_00003647-exon-sc0000030-1491911889:539944..540219 | Clytia hemisphaerica | exon |
| TCONS_00003647-exon-sc0000030-1491911889:537352..539431 | TCONS_00003647-exon-sc0000030-1491911889:537352..539431 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:537352..541800 - |
Blast
The following BLAST results are available for this feature:
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