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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003657 ID=TCONS_00003657|Name=TCONS_00003657|organism=Clytia hemisphaerica|type=transcript|length=652bp
GTCAAGGCTAGTGAATCAGGATCAACTGATCTTGGGCTAAATATTTTGAA
CCACGATTTTAAAGAGATcactaaaaatgtttttcagaaGATTTCAGCTA
CCTTTGAAAATGATGGAAATAATTTCGAAGAACTTTTAAAGGAATTGATT
GCTGACTTACGTAAGAGTGACATTCTTGTGCTGATGGGACTGGGTCGAAC
AGAAGGTAGTTTGAACGTATTACCTCCAGATATGTACACCTTGAGGAGCT
CCTTTCAACAAATTCATCACCCGAAATCAAAAATGACCGTGGGTGCACGC
GCTCTTACAAAACACAGTCATCGGAGCAGTGAATTATTCTGGGGAGTTTG
TACAGGGAAAGAGGAAGCTAAAAATGCGCATGCGCTAGAAATATTGGTCA
AAATAATTAGCGATTGTTCATGGATTAATATTCACACGCTGCCGCATCAA
ACCTACGTTTTAGAGATGAGATCTAGTGTTGGATACGGGTTGCGATGGAA
ACATGATGGGACCATGTTTCGTGGATTCTTGGAACCTCAAATGGAGAATG
GGCACGAGGTTGGCTGGAGACATTAATGCATTGCGCGTTTGGTCTGATTT
GTTTGGAAGATCGAGGTTATCTGAGAAATGGTACATGCTTTTGGCTCGTG
CA Run BLAST on NCBI protein sequence of TCONS_00003657-protein >TCONS_00003657-protein ID=TCONS_00003657-protein|Name=TCONS_00003657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
VKASESGSTDLGLNILNHDFKEITKNVFQKISATFENDGNNFEELLKELI
ADLRKSDILVLMGLGRTEGSLNVLPPDMYTLRSSFQQIHHPKSKMTVGAR
ALTKHSHRSSELFWGVCTGKEEAKNAHALEILVKIISDCSWINIHTLPHQ
TYVLEMRSSVGYGLRWKHDGTMFRGFLEPQMENGHEVGWRH Run BLAST on NCBI transcript from alignment at sc0000030:585665..589744- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003657 ID=TCONS_00003657|Name=TCONS_00003657|organism=Clytia hemisphaerica|type=transcript|length=4080bp|location=Sequence derived from alignment at sc0000030:585665..589744- (Clytia hemisphaerica)
GTCAAGGCTAGTGAATCAGGATCAACTGATCTTGGGCTAAATATTTTGAA
CCACGATTTTAAAGAGATCACTAAAAATGTTTTTCAGAAGATTTCAGCTA
CCTTTGAAAATGATGGAAATAATTTCGAAGAACTTTTAAAGGAATTGATT
GCTGACTTACGTAAGAGTGACATTCTTGTGCTGATGGGACTGGGTCGAAC
AGAAGGTAGTTTGAACGTATTACCTCCAGATATGTACACCTTGAGGAGCT
CCTTTCAACAAATTCATCACCCGAAATCAAAAATGACCGTGGGTGCACGC
GCTCTTACAAAACACAGTCATCGGAGCAGTGAATTATTCTGGGGAGTTTG
TACAGGGAAAGAGGAAGCTAAAAATGCGCATGCGCTAGAAATATTGGTCA
AAATAATTAGCGATTGTTCATGGATTAATATTCACACGCTGCCGCATCAA
ACCTACGTTTTAGAGATGAGATCTAGTGTTGGATACGGGTTGCGATGGAA
ACATGATGGGACCATGTTTCGTGGATTCTTGGAACCTCAAATGGAGAATG
GGCACGAGGTTGGCTGGAGACATTAATGCATTGCGCGTTTGGTCTGATTT
GTTTGGAAGATCGAGGTTATCTGAGAAATGGTAAGTTTATATACTTTTCG
TTATTTTCTCAGGTTAAAAAATCTAGCGGGGATAGTTTTGGAGTGCAATT
TTTTCCATTGAATTTTATCAAAATCAATTTTCTAGTGGGGCTGAAATTTT
TAGATTATTTTTCCCGCACATTTTGGCCAAAATTTTCGTTCATCGTACTT
TTTTTTTGCATTGTTCTCAGGTCAAAAAATCTAACGGGGATGGTTTTGGA
GTGCAATTTTTTCCATTTTAAAAATCTAATCAAAATCAATTTTCCAGTGG
AGGTTATTTTACCTTTAATTATTCTAGTATCTTATGTATTGGTTTTCGTA
ATATCGAAATTTTGATTTTGCTATTTTTTGATTGGTTGATTTTTGCAAAA
AGTTGCACATATGTGGCCATATTTTGTTGCTCTCCACCGTTTGGATTATA
AGAAGTAAAGAAACCCGTTTTTGTCTGCGTTTTCTTAAATTACTTTGGGT
TTTTAGCTTCTCTAAACTACAGAATCGTACAGCATTCTCAAATTTTAGTA
TGATTAATACTTTAAATGATGATTCACAACCCTGAAAATTTCTATAACAA
AGATTTATGAAAAATTAAAAGTCGAAAGAAAAATCCATATCTCCCAGGTG
TCCTCGCAGGAACAAAACGCATTTGTTTACCCCCCCCCCCTACGCAATTT
AAGACACAACTATGGAGTGTGTCTTTTCTCGATATAATTTTGAGATTTTT
GAATTACATGAAAGGTGTATTGGGGAGGTGTTCCTTGGCTTCTAATAAAC
TGCTGCCCCGGCGAGCACTCCAGTTTAGAGAACTACAGGACTAAGCTTTT
GAACTAACTGAAGCATCATAGAATAAATACTGTGTAAAAATTCAGAAGCT
TCTCAATATTTTTGTCACTCTTTACTCGGTTTACTCGGAGTCCTCTATTC
AGTTAACCCAGTTAAGTTTGGTGTTTATGATTAAAAAATTGACTATCAAA
TAGATCATTTTAACAATTTTACAATTTATGTAGTTTATTTCCCTAAGCCT
GCTGTGCAAAAAGGAAAAATCGAGATCACGTTAATTTTTATTGATGGTAC
TTGCTTCCAAATCTATTGTAAACATCAGAATCTTAAAAACATGTACCCAG
TTCTTAGTAAGAAAAGACCCATGACATGAAAGATTTCTATCTGAAGAAGC
TAATCAAATTTCAGAAAACACTAAAACTTTTTCCCATATCATATGACAAC
AATCAAATGACCAATGAATTTATCGACTTTCTAACGCTTTAATAATTTAG
TCAAGAGGATTACTTTAATGGTGTTTCAGAAATGATTTTTTGCCTTTCTT
CTTCCTACAGGAATTATATTAACTGACTTACCCTATGGATATTGAAATGG
ATAACTTATTCCCAGGTGATTTTATTCTTTAAACCTGTATTTGATTCATT
ACATTTAGTCTAATGGAATCTAGAAATGTCGCATTTGACCTTCAGAATAT
ACAGTTTGTTTATACCCAACTGGCACACAACGTTATTTCAACGTCTATCT
AATGTTCATAACGTCCATAATAACATTTGATGAACGTTGAAACAACGTTG
TGTGTCAGCTGGGTAAGAAAAAGGGCTACTTAATCGGTATGTATCGTAGG
TCGGCTAGGTGCTTCCACAAAAAAAAATTAAATAGGTGGATTTATCAATT
TTAAAGCTACGAGGAACTTGGATATGTTTAGAAATCTGCTAGGTAGAGAT
TTTAGCGAGTTTTTGTTTTTTCACTTGTGAGGACGGTAGAGTGCTTGGAG
TGATTTGGAATAACCCGTAGAATTGAGGAGGGTGAAGAAGTGCTTCTTTA
CCGTCGTCCTCAGTCGATCAGGATCTAGACACATACACAAACTCGCTTTT
AATTATAGGGGTGGCTGAATTGAAGTGGTTGCCTGAAAATTGCACACATA
AACATTTTTTACGAAATGTCCAAAGTATGAGGTAATCTTTGTATGTCTCA
GCCAATCAGAGCTTTATTCGACGTGTGTTCGTGATTTTTTACATGAATCT
GCTGATAGGAAATTTGCGTATTCACCCTTTTTTTTTCAAATTCGGGATTT
ATTTTATGTTTTTATTAAAGACCATGGTCGCACGCCACGCTTCGCTCCGA
TACGAAACGGTTCCGAAACACTGTGTGAACGTTAAAATTTAAAACGTCAA
AAAAAAGACGTTACAAAGAAAAACAGATCGAAACGGTTATGCTCCACTGT
TCATCGGAACGGAACTGCTCCGTTTTCTTGCTCCAAAACGTTCTGAAATG
AGTATGAACACTTTCTATCCGTAATAAATACCACACTGGAGCGATACGAA
ACCGTAATTTCTGAATGTATGGTCATAATTTCATAAACTTTTATCGGGTT
TTAGAATAAAATTTATTTTGTTGTTGTTTTCATGTAATTTTTGAAAACGA
AAGTGAAAATGGCGATGTCCTCTAGTCTACTTCACTGGACTTATCGCCAT
CAAAATCAACAAAAAGCAAAGTTCATTCAGAAGTAGAATTCACTTTCGTT
TTCTAAATTTTCTTCCGACTTCGCCACTGCGTAGCGTCAACCCCCCTGAC
ATTTGGGGGGGGGGTTTACACCCAAAATATTGCAAACAAAAACTGGGAGC
TAAAATACAGCCAAATATTTGGGGGAACCTGATATTTTTTTTTGGGGGGG
GGCTGGAATTTCAATGGCAAGGCTGGGGGCTGACTATTTCTTTTATTATT
TTTCTTTATATCACCACATTTCTATCCAAAAACCTTTCATTTTACAGTTT
ATTGATTCTGTTTGTTTTCGAACGGTGCAATGTTGTGTTTCCTGAACGCA
TGTTTTAATAGCCGTAATGAACTCTTGATTTTCAGTTAAGCTCTAATCGT
ATGCTTTAAGATTCAGTGAAAAGTAAGAGATCTCTTAATCTTTATGTAAT
CCTAAGGCATCTTAATGCGTCTCAGATCAACGGGTTGAGCTTACACGGTA
TTAGAGAATTTTTAATAAGCTCTACTAAAGCAACTATTGGATCCCAACTT
CCGTTACAGATTAGTTTGTGTCTATAAATATTTAAGGTACATGCTTTTGG
CTCGTGCTTTATGTCATTTTTGACCTACTGTATATTTACGGGTAGTAAAA
GATATGTAAGTTAGAAATGGGCCAATACTTTGGTTAGATTAAAATATTTA
GTATCATGGGTATCAGAAGGGGAACTACGCCCACGCTCCTTTATTCGATG
AAAATCCAATTTCCCGTTGGAAATCGAATTAGAGAGCATCAACTGTAAAA
ACAAAGCATACCTTTTGACACAGACTTCAGAATCTTACTTTAGTCATTAT
AGGAGATCCTGGAATGCACTTAATTAAGACAAAGTACTAAAGTGGTACTA
GCCACCTATTGGATCCCAACTTCCGCTACAGATTAATTCGTGTCTATAAA
TATTTCAGGTACATGCTTTTGGCTCGTGCA Coding sequence (CDS) from alignment at sc0000030:585665..589744- >TCONS_00003657 ID=TCONS_00003657|Name=TCONS_00003657|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at sc0000030:585665..589744- (Clytia hemisphaerica)
GTCAAGGCTAGTGAATCAGGATCAACTGATCTTGGGCTAAATATTTTGAA
CCACGATTTTAAAGAGATCACTAAAAATGTTTTTCAGAAGATTTCAGCTA
CCTTTGAAAATGATGGAAATAATTTCGAAGAACTTTTAAAGGAATTGATT
GCTGACTTACGTAAGAGTGACATTCTTGTGCTGATGGGACTGGGTCGAAC
AGAAGGTAGTTTGAACGTATTACCTCCAGATATGTACACCTTGAGGAGCT
CCTTTCAACAAATTCATCACCCGAAATCAAAAATGACCGTGGGTGCACGC
GCTCTTACAAAACACAGTCATCGGAGCAGTGAATTATTCTGGGGAGTTTG
TACAGGGAAAGAGGAAGCTAAAAATGCGCATGCGCTAGAAATATTGGTCA
AAATAATTAGCGATTGTTCATGGATTAATATTCACACGCTGCCGCATCAA
ACCTACGTTTTAGAGATGAGATCTAGTGTTGGATACGGGTTGCGATGGAA
ACATGATGGGACCATGTTTCGTGGATTCTTGGAACCTCAAATGGAGAATG
GGCACGAGGTTGGCTGGAGACATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003657-exon-sc0000030-1575043694:589115..589744 | TCONS_00003657-exon-sc0000030-1575043694:589115..589744 | Clytia hemisphaerica | exon |
| TCONS_00003657-exon-sc0000030-1575043694:585665..585686 | TCONS_00003657-exon-sc0000030-1575043694:585665..585686 | Clytia hemisphaerica | exon |
| TCONS_00003657-exon-sc0000030-1510915933:589115..589744 | TCONS_00003657-exon-sc0000030-1510915933:589115..589744 | Clytia hemisphaerica | exon |
| TCONS_00003657-exon-sc0000030-1510915933:585665..585686 | TCONS_00003657-exon-sc0000030-1510915933:585665..585686 | Clytia hemisphaerica | exon |
| TCONS_00003657-exon-sc0000030-1491911889:589115..589744 | TCONS_00003657-exon-sc0000030-1491911889:589115..589744 | Clytia hemisphaerica | exon |
| TCONS_00003657-exon-sc0000030-1491911889:585665..585686 | TCONS_00003657-exon-sc0000030-1491911889:585665..585686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:585665..589744 - |
Blast
The following BLAST results are available for this feature:
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