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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003681 ID=TCONS_00003681|Name=TCONS_00003681|organism=Clytia hemisphaerica|type=transcript|length=1600bp
CCAAAATACAGTGACCAACCACCAATCCTGCTTAAAGCAAACAGAAGTTA
TAATTATACCTCATTTTGAAGACGGAGAAGGGACAACATTTTATTCTTAC
TTTCATTTGTTGACGTTGGTGAAACATTTGGTGAGAGATGTGTGTATAAA
AACATGGATTTACGCTCGTGAGGACAAACAATTTGTTgaagtaaacaaag
aaaatgtggATGATGTATTTGTAAATGGTGATATTGGAAGTGGAATTGAG
ATTGATATTCCTACAGTCTTGAATATGTTGACGGAtgcttttaaaaacat
tctagAGCCACAAACATCTGATAAATACCAGCGTTCAATACCAACACTTC
TGTATCTAGCTGGTCAAGGAAGGAATGGTGGGAATAAATTCATATCAAGG
AAATTAAAATCCCTAGAAGACAATGATCACTACCGCATCATTTTAATGTG
TTTATCGCCTTATGAAAAAGATTTATGTACGTTGAGTAAAACATGGCTTC
CAAGGAATAGGCTCGCTCAAATTTTCACATATGGAGGANTAGGAACGGCG
GGAATAAATTTATATCAAGGAAATTAAAATCCCTAGAAGACAATGATCAC
TATCGCATCATCTTAATGTGCTTATCGCCTTATGAAAAAGATTTATGTGT
GTTGAGTAAAACATGGCTTCCAAGAAATAGACTTGCTCAAATTTTTACAT
ATGGTGGGAGCAACTATTTAGTAAACATACTATTTAAAACAGACATTCAT
AAACTATTGTTGGGTTTAGTTAGAAATCATAATTGGGATCCATTCAATGC
TTTTAAAGAAGTTGAAGTATATACATGTGGAAAGAAGAAGAATATCAATC
TGTATCTATGGACGAACAATGCGATGGATAAGGGCGAATATTTTGGACAT
CAATTATTGTTAGAAATATATTCAAGAGTGTTTACAAAAGCTAATGTTTT
CCATGTCGATGATATCATGAATCTGGTAACTGAGATAGATAAAAAACTTT
ACAGTGAAGATCTTTGGGGAACACTTGAAACTCGAATGActgataaaaaa
atgaaagagtaCTTCAAACATCAACATGGAAACGGCAGTATTATTTTTCA
TATCAATTACCAAGGGATCGAAGTGATTATTGAAGGTGAAACACCATGGA
AAAGGAATAAGGATCTTCTTTCTGTTGGCAAAGTCATCGATGTTATTGTT
GTTGATAATGTGACAAAAACTCCTTTTCTTCAAAATGGGGATATCATAAC
TAACGAAGACGATTTGATGAGTTATGATTTCTTCAAATTACtgattgaaa
gaataaatttcgtTTTATGTCAAATGGAGTAAATTACAGAAAGGACAAAA
CATCTCTAGTGATAATATAACTCTCGAGGAAGATCTAAATCTAAATGTTT
GGGCTTGGAGTATGTTTCCGGGGACGCCATCATAATTTGACGGCTTTATT
CAAACATAGGcagcaatcaaaaatatgttccattcgggttctaaaacatc
ttcaaatccagtcggttggtcggtcggtGGTAAATTTTATCGGATTTTTA
AGATAGTTTataattaatagtttataaTAGTCTAATAGTTTATAATTCAG Run BLAST on NCBI protein sequence of TCONS_00003681-protein >TCONS_00003681-protein ID=TCONS_00003681-protein|Name=TCONS_00003681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MCLSPYEKDLCVLSKTWLPRNRLAQIFTYGGSNYLVNILFKTDIHKLLLG
LVRNHNWDPFNAFKEVEVYTCGKKKNINLYLWTNNAMDKGEYFGHQLLLE
IYSRVFTKANVFHVDDIMNLVTEIDKKLYSEDLWGTLETRMTDKKMKEYF
KHQHGNGSIIFHINYQGIEVIIEGETPWKRNKDLLSVGKVIDVIVVDNVT
KTPFLQNGDIITNEDDLMSYDFFKLLIERINFVLCQME Run BLAST on NCBI transcript from alignment at sc0000030:126391..127990 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003681 ID=TCONS_00003681|Name=TCONS_00003681|organism=Clytia hemisphaerica|type=transcript|length=1600bp|location=Sequence derived from alignment at sc0000030:126391..127990 (Clytia hemisphaerica)
CTGAATTATAAACTATTAGACTAttataaactattaattatAAACTATCT
TAAAAATCCGATAAAATTTACCaccgaccgaccaaccgactggatttgaa
gatgttttagaacccgaatggaacatatttttgattgctgCCTATGTTTG
AATAAAGCCGTCAAATTATGATGGCGTCCCCGGAAACATACTCCAAGCCC
AAACATTTAGATTTAGATCTTCCTCGAGAGTTATATTATCACTAGAGATG
TTTTGTCCTTTCTGTAATTTACTCCATTTGACATAAAacgaaatttattc
tttcaatcaGTAATTTGAAGAAATCATAACTCATCAAATCGTCTTCGTTA
GTTATGATATCCCCATTTTGAAGAAAAGGAGTTTTTGTCACATTATCAAC
AACAATAACATCGATGACTTTGCCAACAGAAAGAAGATCCTTATTCCTTT
TCCATGGTGTTTCACCTTCAATAATCACTTCGATCCCTTGGTAATTGATA
TGAAAAATAATACTGCCGTTTCCATGTTGATGTTTGAAGtactctttcat
ttttttatcagTCATTCGAGTTTCAAGTGTTCCCCAAAGATCTTCACTGT
AAAGTTTTTTATCTATCTCAGTTACCAGATTCATGATATCATCGACATGG
AAAACATTAGCTTTTGTAAACACTCTTGAATATATTTCTAACAATAATTG
ATGTCCAAAATATTCGCCCTTATCCATCGCATTGTTCGTCCATAGATACA
GATTGATATTCTTCTTCTTTCCACATGTATATACTTCAACTTCTTTAAAA
GCATTGAATGGATCCCAATTATGATTTCTAACTAAACCCAACAATAGTTT
ATGAATGTCTGTTTTAAATAGTATGTTTACTAAATAGTTGCTCCCACCAT
ATGTAAAAATTTGAGCAAGTCTATTTCTTGGAAGCCATGTTTTACTCAAC
ACACATAAATCTTTTTCATAAGGCGATAAGCACATTAAGATGATGCGATA
GTGATCATTGTCTTCTAGGGATTTTAATTTCCTTGATATAAATTTATTCC
CGCCGTTCCTANTCCTCCATATGTGAAAATTTGAGCGAGCCTATTCCTTG
GAAGCCATGTTTTACTCAACGTACATAAATCTTTTTCATAAGGCGATAAA
CACATTAAAATGATGCGGTAGTGATCATTGTCTTCTAGGGATTTTAATTT
CCTTGATATGAATTTATTCCCACCATTCCTTCCTTGACCAGCTAGATACA
GAAGTGTTGGTATTGAACGCTGGTATTTATCAGATGTTTGTGGCTctaga
atgtttttaaaagcaTCCGTCAACATATTCAAGACTGTAGGAATATCAAT
CTCAATTCCACTTCCAATATCACCATTTACAAATACATCATccacatttt
ctttgtttacttcAACAAATTGTTTGTCCTCACGAGCGTAAATCCATGTT
TTTATACACACATCTCTCACCAAATGTTTCACCAACGTCAACAAATGAAA
GTAAGAATAAAATGTTGTCCCTTCTCCGTCTTCAAAATGAGGTATAATTA
TAACTTCTGTTTGCTTTAAGCAGGATTGGTGGTTGGTCACTGTATTTTGG
Coding sequence (CDS) from alignment at sc0000030:126391..127990 >TCONS_00003681 ID=TCONS_00003681|Name=TCONS_00003681|organism=Clytia hemisphaerica|type=CDS|length=717bp|location=Sequence derived from alignment at sc0000030:126391..127990 (Clytia hemisphaerica)
TTACTCCATTTGACATAAAacgaaatttattctttcaatcaGTAATTTGA
AGAAATCATAACTCATCAAATCGTCTTCGTTAGTTATGATATCCCCATTT
TGAAGAAAAGGAGTTTTTGTCACATTATCAACAACAATAACATCGATGAC
TTTGCCAACAGAAAGAAGATCCTTATTCCTTTTCCATGGTGTTTCACCTT
CAATAATCACTTCGATCCCTTGGTAATTGATATGAAAAATAATACTGCCG
TTTCCATGTTGATGTTTGAAGtactctttcatttttttatcagTCATTCG
AGTTTCAAGTGTTCCCCAAAGATCTTCACTGTAAAGTTTTTTATCTATCT
CAGTTACCAGATTCATGATATCATCGACATGGAAAACATTAGCTTTTGTA
AACACTCTTGAATATATTTCTAACAATAATTGATGTCCAAAATATTCGCC
CTTATCCATCGCATTGTTCGTCCATAGATACAGATTGATATTCTTCTTCT
TTCCACATGTATATACTTCAACTTCTTTAAAAGCATTGAATGGATCCCAA
TTATGATTTCTAACTAAACCCAACAATAGTTTATGAATGTCTGTTTTAAA
TAGTATGTTTACTAAATAGTTGCTCCCACCATATGTAAAAATTTGAGCAA
GTCTATTTCTTGGAAGCCATGTTTTACTCAACACACATAAATCTTTTTCA
TAAGGCGATAAGCACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003681-exon-sc0000030-1491911889:126391..127990 | TCONS_00003681-exon-sc0000030-1491911889:126391..127990 | Clytia hemisphaerica | exon |
| TCONS_00003681-exon-sc0000030-1510915933:126391..127990 | TCONS_00003681-exon-sc0000030-1510915933:126391..127990 | Clytia hemisphaerica | exon |
| TCONS_00003681-exon-sc0000030-1575043694:126391..127990 | TCONS_00003681-exon-sc0000030-1575043694:126391..127990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:126391..127990 . |
Blast
The following BLAST results are available for this feature:
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