TCONS_00003692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003692
Unique NameTCONS_00003692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003692 ID=TCONS_00003692|Name=TCONS_00003692|organism=Clytia hemisphaerica|type=transcript|length=444bp
CCGCCCATCAAGACTTTTCCTAATGGGAGGAAAGGAGATTGCATCGCAAG
AAGGTACCACACAAGGTGACCCTACAGCAATGCCAGCATATGCAATTGGA
TTAATGCCACTGCTTGAGATCCTCCAAGAAGATTTGCTGACACAAGGAGT
TAAAAATGCTGCATATGCTGACGACCTCGCTGGTACTGGGAAGCTTCAAG
CCCTGAAGAAGTGGTGGGATGACGTCAATGACTTAGGACCTCTCCTAGGT
TACAACCCAAAAGCTTCCAAGTCGTATTTGATAGTGAAGGAGGATAAGCT
CGAAGAAGCAAAGGTGCTATTCAAAGACAGTGGAATCAACATCACGGTTG
ATGGACACAAATATCTTGGTGGTTTCATTGGTCAAGAGGGTGGCCAACAG
GAATATGTAaagaaattgatagaaaaatgGCAAGCTGAGCTCCA
Run BLAST on NCBI

protein sequence of TCONS_00003692-protein

>TCONS_00003692-protein ID=TCONS_00003692-protein|Name=TCONS_00003692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
RPSRLFLMGGKEIASQEGTTQGDPTAMPAYAIGLMPLLEILQEDLLTQGV
KNAAYADDLAGTGKLQALKKWWDDVNDLGPLLGYNPKASKSYLIVKEDKL
EEAKVLFKDSGINITVDGHKYLGGFIGQEGGQQEYVKKLIEKWQAEL
Run BLAST on NCBI

transcript from alignment at sc0000030:327466..327909

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003692 ID=TCONS_00003692|Name=TCONS_00003692|organism=Clytia hemisphaerica|type=transcript|length=444bp|location=Sequence derived from alignment at sc0000030:327466..327909 (Clytia hemisphaerica)
TGGAGCTCAGCTTGCcatttttctatcaatttcttTACATATTCCTGTTG
GCCACCCTCTTGACCAATGAAACCACCAAGATATTTGTGTCCATCAACCG
TGATGTTGATTCCACTGTCTTTGAATAGCACCTTTGCTTCTTCGAGCTTA
TCCTCCTTCACTATCAAATACGACTTGGAAGCTTTTGGGTTGTAACCTAG
GAGAGGTCCTAAGTCATTGACGTCATCCCACCACTTCTTCAGGGCTTGAA
GCTTCCCAGTACCAGCGAGGTCGTCAGCATATGCAGCATTTTTAACTCCT
TGTGTCAGCAAATCTTCTTGGAGGATCTCAAGCAGTGGCATTAATCCAAT
TGCATATGCTGGCATTGCTGTAGGGTCACCTTGTGTGGTACCTTCTTGCG
ATGCAATCTCCTTTCCTCCCATTAGGAAAAGTCTTGATGGGCGG

Coding sequence (CDS) from alignment at sc0000030:327466..327909

>TCONS_00003692 ID=TCONS_00003692|Name=TCONS_00003692|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at sc0000030:327466..327909 (Clytia hemisphaerica)
GAGCTCAGCTTGCcatttttctatcaatttcttTACATATTCCTGTTGGC
CACCCTCTTGACCAATGAAACCACCAAGATATTTGTGTCCATCAACCGTG
ATGTTGATTCCACTGTCTTTGAATAGCACCTTTGCTTCTTCGAGCTTATC
CTCCTTCACTATCAAATACGACTTGGAAGCTTTTGGGTTGTAACCTAGGA
GAGGTCCTAAGTCATTGACGTCATCCCACCACTTCTTCAGGGCTTGAAGC
TTCCCAGTACCAGCGAGGTCGTCAGCATATGCAGCATTTTTAACTCCTTG
TGTCAGCAAATCTTCTTGGAGGATCTCAAGCAGTGGCATTAATCCAATTG
CATATGCTGGCATTGCTGTAGGGTCACCTTGTGTGGTACCTTCTTGCGAT
GCAATCTCCTTTCCTCCCATTAGGAAAAGTCTTGATGGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002052XLOC_002052Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003692-proteinTCONS_00003692-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003692-exon-sc0000030-1491911889:327466..327909TCONS_00003692-exon-sc0000030-1491911889:327466..327909Clytia hemisphaericaexon
TCONS_00003692-exon-sc0000030-1510915933:327466..327909TCONS_00003692-exon-sc0000030-1510915933:327466..327909Clytia hemisphaericaexon
TCONS_00003692-exon-sc0000030-1575043694:327466..327909TCONS_00003692-exon-sc0000030-1575043694:327466..327909Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:327466..327909 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.277248	0.173824	1.78881	0.820764	0	0.361034	0	0.181709	0.344027	0.426133	0.612804	0.179154	0.642097	0.466265	0.663747	1.95067	0.973464	0.85862	1.0111	0.454131	0.871055	1.39395	0.451538	0.236616	1.54784	1.28656	0.83666	0.50718	0.742288	0.267189
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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