TCONS_00003696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003696
Unique NameTCONS_00003696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003696 ID=TCONS_00003696|Name=TCONS_00003696|organism=Clytia hemisphaerica|type=transcript|length=1484bp
attactacaCCCTGGGCCAGTAAAAGAATGgtataaattcttttgtttct
agACTTCAGCTAATACATGTAGAAATATCTTGAAATCTGGATTTCCTTAT
TTGACACCATTGTTTGACTCTTTGTTATAGAAATCATAAAGTATTTTTTA
AGTGATGGGTACTTTAAAGGAAAAGGAGTGTCTCCAACGATCAAGAGCTG
CATGTTTAGAAAATATTCGAAATCTAAATGTATGGGGCAGTGGATTACAT
GACATTTCTATTGTGCAGCAGCTGGTTAACTTGGAAGTATTAAATTTAAG
TGTCAACAATGTTTACACACTTCAAAATTTATCTCATTGTCCAAGAATCA
AGGAAATTTATttgcgaaaaaataaaataagtgATTTAAAGGAGATCAAA
TTTcttagaaatttgccaaatctGCAAGTGTTATGGATTGCTGATAACCC
TTGTAGCGAGACAAATGAAACCTATAGATACactgttttaaaaaatttac
caaaTCTCATAAAACTCGATAGTTCTGTTGTAACCCAGGAAGATCGAGAA
CTTGCACAAGAAAGAGGCATACTTTATGAAAATGATATTGAGTTACCTTG
TTTTGATGGACTAGAACTTGATAAAACACTAACCACTGAAGCACTTCGCT
CATTTTTCAAGAATCAGAAGTCGGTGAATGAAGATATTCCTAACGAAGAA
TATGAAAAAGTTGAAGTTGCTGAAATTACACTACCTCCTGATGAGGAGCT
GCCCAAAGATAATAATCCTTCTGAAAACAACAATaatattgaaaacattt
caggACCACCTCTAGTTGAAGACAGCTTGAAAGAGGTCTTACCGGCTCAA
GAAGAAAAAGATCTTCAGAATACTTCAACCATTGAAAATGAAGCCTCCTC
TACCACTGAATCGTCTCTTCCAAGAAGCTTGTCTCGTAAATCGAATACAT
TGGCAGCAGTGTTATTGCTTATTAATGACTTGAATGAAGATGAGCTGGAA
GAAGTACAATCTGTAACTAAACAAATGCTTGACGCAAAATCATCTAAAGT
TACAGAGTCAATTTTGGTAGATTAATAATATATCACACAAGTATAACTGT
TGATTAAAATtaacttgaaaaaaatcaacCCACATTCTTCATATCATGGC
TGGTTTCAATTAGAGGGGGTATTCACCACAAAATTTTCTGTTCATGTTCA
TAATTCTGCTGGTCTAGCTgcatttgtgtaataaggtttATCCTACTAGT
GTTTTTCTAAAGTCTGTCTCTAAATAATATACAGCTGGGAATATTATCAA
TTAaaaatttggaagaaaaaagaaaaagaaaatgaaaaatgaagaagaaa
aaaatcaacttcttgtagaaatgtggtataattaccattttcacaggagc
aGCATTTTGTCTTGAAAAGATCTTTAATACCCTTTCTGCAGCTATTAAAA
CCTATAACTACCATATCTCATTCTATCAtcaaat
Run BLAST on NCBI

protein sequence of TCONS_00003696-protein

>TCONS_00003696-protein ID=TCONS_00003696-protein|Name=TCONS_00003696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MGTLKEKECLQRSRAACLENIRNLNVWGSGLHDISIVQQLVNLEVLNLSV
NNVYTLQNLSHCPRIKEIYLRKNKISDLKEIKFLRNLPNLQVLWIADNPC
SETNETYRYTVLKNLPNLIKLDSSVVTQEDRELAQERGILYENDIELPCF
DGLELDKTLTTEALRSFFKNQKSVNEDIPNEEYEKVEVAEITLPPDEELP
KDNNPSENNNNIENISGPPLVEDSLKEVLPAQEEKDLQNTSTIENEASST
TESSLPRSLSRKSNTLAAVLLLINDLNEDELEEVQSVTKQMLDAKSSKVT
ESILVD
Run BLAST on NCBI

transcript from alignment at sc0000030:516479..517962

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003696 ID=TCONS_00003696|Name=TCONS_00003696|organism=Clytia hemisphaerica|type=transcript|length=1484bp|location=Sequence derived from alignment at sc0000030:516479..517962 (Clytia hemisphaerica)
atttgaTGATAGAATGAGATATGGTAGTTATAGGTTTTAATAGCTGCAGA
AAGGGTATTAAAGATCTTTTCAAGACAAAATGCtgctcctgtgaaaatgg
taattataccacatttctacaagaagttgatttttttcttcttcattttt
cattttctttttcttttttcttccaaattttTAATTGATAATATTCCCAG
CTGTATATTATTTAGAGACAGACTTTAGAAAAACACTAGTAGGATaaacc
ttattacacaaatgcAGCTAGACCAGCAGAATTATGAACATGAACAGAAA
ATTTTGTGGTGAATACCCCCTCTAATTGAAACCAGCCATGATATGAAGAA
TGTGGgttgatttttttcaagttaATTTTAATCAACAGTTATACTTGTGT
GATATATTATTAATCTACCAAAATTGACTCTGTAACTTTAGATGATTTTG
CGTCAAGCATTTGTTTAGTTACAGATTGTACTTCTTCCAGCTCATCTTCA
TTCAAGTCATTAATAAGCAATAACACTGCTGCCAATGTATTCGATTTACG
AGACAAGCTTCTTGGAAGAGACGATTCAGTGGTAGAGGAGGCTTCATTTT
CAATGGTTGAAGTATTCTGAAGATCTTTTTCTTCTTGAGCCGGTAAGACC
TCTTTCAAGCTGTCTTCAACTAGAGGTGGTcctgaaatgttttcaatatt
ATTGTTGTTTTCAGAAGGATTATTATCTTTGGGCAGCTCCTCATCAGGAG
GTAGTGTAATTTCAGCAACTTCAACTTTTTCATATTCTTCGTTAGGAATA
TCTTCATTCACCGACTTCTGATTCTTGAAAAATGAGCGAAGTGCTTCAGT
GGTTAGTGTTTTATCAAGTTCTAGTCCATCAAAACAAGGTAACTCAATAT
CATTTTCATAAAGTATGCCTCTTTCTTGTGCAAGTTCTCGATCTTCCTGG
GTTACAACAGAACTATCGAGTTTTATGAGAtttggtaaattttttaaaac
agtGTATCTATAGGTTTCATTTGTCTCGCTACAAGGGTTATCAGCAATCC
ATAACACTTGCagatttggcaaatttctaagAAATTTGATCTCCTTTAAA
TcacttattttattttttcgcaaATAAATTTCCTTGATTCTTGGACAATG
AGATAAATTTTGAAGTGTGTAAACATTGTTGACACTTAAATTTAATACTT
CCAAGTTAACCAGCTGCTGCACAATAGAAATGTCATGTAATCCACTGCCC
CATACATTTAGATTTCGAATATTTTCTAAACATGCAGCTCTTGATCGTTG
GAGACACTCCTTTTCCTTTAAAGTACCCATCACTTAAAAAATACTTTATG
ATTTCTATAACAAAGAGTCAAACAATGGTGTCAAATAAGGAAATCCAGAT
TTCAAGATATTTCTACATGTATTAGCTGAAGTctagaaacaaaagaattt
atacCATTCTTTTACTGGCCCAGGGtgtagtaat

Coding sequence (CDS) from alignment at sc0000030:516479..517962

>TCONS_00003696 ID=TCONS_00003696|Name=TCONS_00003696|organism=Clytia hemisphaerica|type=CDS|length=921bp|location=Sequence derived from alignment at sc0000030:516479..517962 (Clytia hemisphaerica)
TTAATCTACCAAAATTGACTCTGTAACTTTAGATGATTTTGCGTCAAGCA
TTTGTTTAGTTACAGATTGTACTTCTTCCAGCTCATCTTCATTCAAGTCA
TTAATAAGCAATAACACTGCTGCCAATGTATTCGATTTACGAGACAAGCT
TCTTGGAAGAGACGATTCAGTGGTAGAGGAGGCTTCATTTTCAATGGTTG
AAGTATTCTGAAGATCTTTTTCTTCTTGAGCCGGTAAGACCTCTTTCAAG
CTGTCTTCAACTAGAGGTGGTcctgaaatgttttcaatattATTGTTGTT
TTCAGAAGGATTATTATCTTTGGGCAGCTCCTCATCAGGAGGTAGTGTAA
TTTCAGCAACTTCAACTTTTTCATATTCTTCGTTAGGAATATCTTCATTC
ACCGACTTCTGATTCTTGAAAAATGAGCGAAGTGCTTCAGTGGTTAGTGT
TTTATCAAGTTCTAGTCCATCAAAACAAGGTAACTCAATATCATTTTCAT
AAAGTATGCCTCTTTCTTGTGCAAGTTCTCGATCTTCCTGGGTTACAACA
GAACTATCGAGTTTTATGAGAtttggtaaattttttaaaacagtGTATCT
ATAGGTTTCATTTGTCTCGCTACAAGGGTTATCAGCAATCCATAACACTT
GCagatttggcaaatttctaagAAATTTGATCTCCTTTAAATcacttatt
ttattttttcgcaaATAAATTTCCTTGATTCTTGGACAATGAGATAAATT
TTGAAGTGTGTAAACATTGTTGACACTTAAATTTAATACTTCCAAGTTAA
CCAGCTGCTGCACAATAGAAATGTCATGTAATCCACTGCCCCATACATTT
AGATTTCGAATATTTTCTAAACATGCAGCTCTTGATCGTTGGAGACACTC
CTTTTCCTTTAAAGTACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002056XLOC_002056Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003696-proteinTCONS_00003696-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003696-exon-sc0000030-1491911889:516479..517962TCONS_00003696-exon-sc0000030-1491911889:516479..517962Clytia hemisphaericaexon
TCONS_00003696-exon-sc0000030-1510915933:516479..517962TCONS_00003696-exon-sc0000030-1510915933:516479..517962Clytia hemisphaericaexon
TCONS_00003696-exon-sc0000030-1575043694:516479..517962TCONS_00003696-exon-sc0000030-1575043694:516479..517962Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:516479..517962 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.8519	15.4361	23.0462	21.8281	13.4425	9.14969	8.60498	9.56215	5.91552	6.79639	7.29903	3.52298	3.77748	3.13747	5.71755	4.61213	6.46915	6.05866	3.88514	3.81332	6.53401	6.82806	13.5808	13.1012	8.79381	11.3858	5.8583	4.90162	10.6404	10.8061
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00003696 vs. Swiss-Prot (Human)
Match: CU002 (Protein C21orf2 OS=Homo sapiens GN=C21orf2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.610e-28
Identity = 64/128 (50.00%), Postives = 92/128 (71.88%), Query Frame = 2 
Query:  164 LKEKECLQRSRAACLENIRNLNVWGSGLHDISIVQQXXXXXXXXXXXXXXYTLQNLSHCPRIKEIYLRKNKISDLKEIKFLRNLPNLQVLWIADNPCSETN-ETYRYTVLKNLPNLIKLDSSVVTQED 544
            L  K  L R++A+ L ++R LN WGS L DISI Q++ +LEV+ LSVN++ TL+ +S C R+ E+YLR+N+I  L E+ +L+ LP L+VLW+A+NPC  T+   YR TVL+ LP L KLD+  VT+E+
Sbjct:    3 LTRKMVLTRAKASELHSVRKLNCWGSRLTDISICQEMPSLEVITLSVNSISTLEPVSRCQRLSELYLRRNRIPSLAELFYLKGLPRLRVLWLAENPCCGTSPHRYRMTVLRTLPRLQKLDNQAVTEEE 130
The following BLAST results are available for this feature:
BLAST of TCONS_00003696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CU0021.610e-2850.00Protein C21orf2 OS=Homo sapiens GN=C21orf2 PE=1 SV... [more]
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