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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003709 ID=TCONS_00003709|Name=TCONS_00003709|organism=Clytia hemisphaerica|type=transcript|length=2155bp
CCCGAACTAACAACCAACAGTTCAATGTAGCCAGTTCGAATGGCAAGACA
CATCATGGTATACCATGCCAAACCAAAAATAACAAGATGAACTTAGCCAG
TTCGAAAGGCAAGACACATCATTGTATACCATCCCGAACTAACAACCAAC
AGTTCAATGTAGCCAGTTCGAATGGCAAGACACATCATGGTATACCATGC
CAAACCAAAAATAACAAGATGAACTTAGCCAGTTCGAAAGGCAAGACACA
TCATTGTATACCATCCCGAACTAACAACCAACAGTTCAATGTAGCCAGTT
CGAATGGCAAGACACATCATGGTATACCATGCCAAACCAAAAATAACAAG
ATGAACTTAGCCAGTTCGAAAGGCAAGACACATCATTGTATACCATCCCG
AACTAACAACCAACAGTTCAATGTAGCCAGTTCGAATGGCAAGACACATC
ATGGTATACCATGCCAAACCAAAAATAACAAGATGAACTTAGCCAGTTCG
AAAGGCAAGACACATCATTGTATACCATCCCGAACTAACAACCAACAGTT
CAATGTAGCCAGTTCGAATGGCAAGACACATCATGGTATACCATGCCAAA
CCAAAAATAACAAGATGAACTTAGCCAGTTCGAAAGGCAAGACACATCAT
TGTATACCATCCCGAACTAACAACCAACAGTTCAATGTAGCCAGTTCGAA
TGGCAAGACACATCATGGTATACCATGCCAAACCAAAAATAACAAGATGA
ACTTAGCCAGTTCGAAAGGCAAGACACATCATTGTATACCATCCCGAACT
AACAACCAACAGTTCAATGTAGCCAGTTCGAATGGCAAGACACATCATGG
TATACCATGCCAAACCAAAAATAACAAGATGAACTTAGCCAGTTCGAAAG
GCAAGACACATCATTGTATACCATTCCGAACTAACAACCAACAGTTCAAT
GTAGCCAGTTCGAATGGCAAGACACATCATTGGAGACCATGCCAAACCAA
AAATAACAAGATGAACTCACACCATAGTCCGGTCTTCCTTCATAATGGCT
ACACTGAGACGTACAACACACAACACTAAACGAAAATACAATGTTCCAAC
CTTACACGATCTCTTCCCAAACTTCACATTCTGGCAGCAAAATCTTCACA
AGCAAAGACGTAACAAAGCTATCCTTAAGTAACATACAACAAACTACAAT
AACAACCTCCTACACAACCTTTCCAGCTGTTCATCAAGATGAAGGCCATG
TCCGTTAAAATAATCAGCCTCAAGTCGATGAAAATGTAGATGTTCGTAGA
GACAAGCGGTAGCCAGACAGAAACGGCATCGTCAAAATTAATCGCCACAT
CAAGCTGCAGTACGTAAAGGGCAATTTAATTTGAGATATCAACAAAATAG
ACCAGCAAAGCGAAAAATGAGCCAATAATAACAATAAATTTATTTGCTCT
AGTGTCCCCGCCCCAAAGAATGATGGCCATGAAAGTCCAAAACTAAGTTA
TGATGAACTGGTTCAAATGCTTCTCTAGAACAAAGagaatgaaaattcaa
aataataaaatgttaGTATTCTACTTGAGAAGATTTAGATTCAACACAGG
TTAAATCgcggtttaacttttatttgataagcgccACAGTATTGGAAAGG
CTGGGAAGCCGCCCTCTgccaactgagtctactttgctaataACCACGTG
CCGTCATGTTCATAATGTTTATCGCAACTCCCTGTTCAAATTGAcgctct
aactgaaagctgacgggatgaaatatttttgctgaATCTTCCAATATCTC
TTAGGGTTGGTTCACAACCATCATTTTTACCGAACGTAGAGATATTTTGA
GGATGGACATTCGTAGATACAAAAGTAGTTTGTGCAATGAAGCGTACAAT
TTTCATAGCATACGAACAAAATGAGACCATATTCAAGGAgtatttgtttt
aaaaaactttatgaaacGAACCATTAAGATTTTATCAAGTACATTAACAA
AATCTGCAACTAATGTGGCAAGTTGAGAATGATCCGGTTTTAGACAGAGG
CATATAGAAGGATCATGATCAGTACATAATAAACAATGGGCATTGATTAG
ATGGTTGTATAGCCTGTTAAGTGATAACAAGGCTGTAAAGTTATGAACGT
GTTGC Run BLAST on NCBI protein sequence of TCONS_00003709-protein >TCONS_00003709-protein ID=TCONS_00003709-protein|Name=TCONS_00003709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
RTNNQQFNVASSNGKTHHGIPCQTKNNKMNLASSKGKTHHCIPSRTNNQQ
FNVASSNGKTHHGIPCQTKNNKMNLASSKGKTHHCIPSRTNNQQFNVASS
NGKTHHGIPCQTKNNKMNLASSKGKTHHCIPSRTNNQQFNVASSNGKTHH
GIPCQTKNNKMNLASSKGKTHHCIPSRTNNQQFNVASSNGKTHHGIPCQT
KNNKMNLASSKGKTHHCIPSRTNNQQFNVASSNGKTHHGIPCQTKNNKMN
LASSKGKTHHCIPSRTNNQQFNVASSNGKTHHGIPCQTKNNKMNLASSKG
KTHHCIPFRTNNQQFNVASSNGKTHHWRPCQTKNNKMNSHHSPVFLHNGY
TETYNTQH Run BLAST on NCBI transcript from alignment at sc0000030:739652..741806 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003709 ID=TCONS_00003709|Name=TCONS_00003709|organism=Clytia hemisphaerica|type=transcript|length=2155bp|location=Sequence derived from alignment at sc0000030:739652..741806 (Clytia hemisphaerica)
GCAACACGTTCATAACTTTACAGCCTTGTTATCACTTAACAGGCTATACA
ACCATCTAATCAATGCCCATTGTTTATTATGTACTGATCATGATCCTTCT
ATATGCCTCTGTCTAAAACCGGATCATTCTCAACTTGCCACATTAGTTGC
AGATTTTGTTAATGTACTTGATAAAATCTTAATGGTTCgtttcataaagt
tttttaaaacaaatacTCCTTGAATATGGTCTCATTTTGTTCGTATGCTA
TGAAAATTGTACGCTTCATTGCACAAACTACTTTTGTATCTACGAATGTC
CATCCTCAAAATATCTCTACGTTCGGTAAAAATGATGGTTGTGAACCAAC
CCTAAGAGATATTGGAAGATtcagcaaaaatatttcatcccgtcagcttt
cagttagagcgTCAATTTGAACAGGGAGTTGCGATAAACATTATGAACAT
GACGGCACGTGGTtattagcaaagtagactcagttggcAGAGGGCGGCTT
CCCAGCCTTTCCAATACTGTggcgcttatcaaataaaagttaaaccgcGA
TTTAACCTGTGTTGAATCTAAATCTTCTCAAGTAGAATACtaacatttta
ttattttgaattttcattctCTTTGTTCTAGAGAAGCATTTGAACCAGTT
CATCATAACTTAGTTTTGGACTTTCATGGCCATCATTCTTTGGGGCGGGG
ACACTAGAGCAAATAAATTTATTGTTATTATTGGCTCATTTTTCGCTTTG
CTGGTCTATTTTGTTGATATCTCAAATTAAATTGCCCTTTACGTACTGCA
GCTTGATGTGGCGATTAATTTTGACGATGCCGTTTCTGTCTGGCTACCGC
TTGTCTCTACGAACATCTACATTTTCATCGACTTGAGGCTGATTATTTTA
ACGGACATGGCCTTCATCTTGATGAACAGCTGGAAAGGTTGTGTAGGAGG
TTGTTATTGTAGTTTGTTGTATGTTACTTAAGGATAGCTTTGTTACGTCT
TTGCTTGTGAAGATTTTGCTGCCAGAATGTGAAGTTTGGGAAGAGATCGT
GTAAGGTTGGAACATTGTATTTTCGTTTAGTGTTGTGTGTTGTACGTCTC
AGTGTAGCCATTATGAAGGAAGACCGGACTATGGTGTGAGTTCATCTTGT
TATTTTTGGTTTGGCATGGTCTCCAATGATGTGTCTTGCCATTCGAACTG
GCTACATTGAACTGTTGGTTGTTAGTTCGGAATGGTATACAATGATGTGT
CTTGCCTTTCGAACTGGCTAAGTTCATCTTGTTATTTTTGGTTTGGCATG
GTATACCATGATGTGTCTTGCCATTCGAACTGGCTACATTGAACTGTTGG
TTGTTAGTTCGGGATGGTATACAATGATGTGTCTTGCCTTTCGAACTGGC
TAAGTTCATCTTGTTATTTTTGGTTTGGCATGGTATACCATGATGTGTCT
TGCCATTCGAACTGGCTACATTGAACTGTTGGTTGTTAGTTCGGGATGGT
ATACAATGATGTGTCTTGCCTTTCGAACTGGCTAAGTTCATCTTGTTATT
TTTGGTTTGGCATGGTATACCATGATGTGTCTTGCCATTCGAACTGGCTA
CATTGAACTGTTGGTTGTTAGTTCGGGATGGTATACAATGATGTGTCTTG
CCTTTCGAACTGGCTAAGTTCATCTTGTTATTTTTGGTTTGGCATGGTAT
ACCATGATGTGTCTTGCCATTCGAACTGGCTACATTGAACTGTTGGTTGT
TAGTTCGGGATGGTATACAATGATGTGTCTTGCCTTTCGAACTGGCTAAG
TTCATCTTGTTATTTTTGGTTTGGCATGGTATACCATGATGTGTCTTGCC
ATTCGAACTGGCTACATTGAACTGTTGGTTGTTAGTTCGGGATGGTATAC
AATGATGTGTCTTGCCTTTCGAACTGGCTAAGTTCATCTTGTTATTTTTG
GTTTGGCATGGTATACCATGATGTGTCTTGCCATTCGAACTGGCTACATT
GAACTGTTGGTTGTTAGTTCGGGATGGTATACAATGATGTGTCTTGCCTT
TCGAACTGGCTAAGTTCATCTTGTTATTTTTGGTTTGGCATGGTATACCA
TGATGTGTCTTGCCATTCGAACTGGCTACATTGAACTGTTGGTTGTTAGT
TCGGG Coding sequence (CDS) from alignment at sc0000030:739652..741806 >TCONS_00003709 ID=TCONS_00003709|Name=TCONS_00003709|organism=Clytia hemisphaerica|type=CDS|length=1077bp|location=Sequence derived from alignment at sc0000030:739652..741806 (Clytia hemisphaerica)
TTAGTGTTGTGTGTTGTACGTCTCAGTGTAGCCATTATGAAGGAAGACCG
GACTATGGTGTGAGTTCATCTTGTTATTTTTGGTTTGGCATGGTCTCCAA
TGATGTGTCTTGCCATTCGAACTGGCTACATTGAACTGTTGGTTGTTAGT
TCGGAATGGTATACAATGATGTGTCTTGCCTTTCGAACTGGCTAAGTTCA
TCTTGTTATTTTTGGTTTGGCATGGTATACCATGATGTGTCTTGCCATTC
GAACTGGCTACATTGAACTGTTGGTTGTTAGTTCGGGATGGTATACAATG
ATGTGTCTTGCCTTTCGAACTGGCTAAGTTCATCTTGTTATTTTTGGTTT
GGCATGGTATACCATGATGTGTCTTGCCATTCGAACTGGCTACATTGAAC
TGTTGGTTGTTAGTTCGGGATGGTATACAATGATGTGTCTTGCCTTTCGA
ACTGGCTAAGTTCATCTTGTTATTTTTGGTTTGGCATGGTATACCATGAT
GTGTCTTGCCATTCGAACTGGCTACATTGAACTGTTGGTTGTTAGTTCGG
GATGGTATACAATGATGTGTCTTGCCTTTCGAACTGGCTAAGTTCATCTT
GTTATTTTTGGTTTGGCATGGTATACCATGATGTGTCTTGCCATTCGAAC
TGGCTACATTGAACTGTTGGTTGTTAGTTCGGGATGGTATACAATGATGT
GTCTTGCCTTTCGAACTGGCTAAGTTCATCTTGTTATTTTTGGTTTGGCA
TGGTATACCATGATGTGTCTTGCCATTCGAACTGGCTACATTGAACTGTT
GGTTGTTAGTTCGGGATGGTATACAATGATGTGTCTTGCCTTTCGAACTG
GCTAAGTTCATCTTGTTATTTTTGGTTTGGCATGGTATACCATGATGTGT
CTTGCCATTCGAACTGGCTACATTGAACTGTTGGTTGTTAGTTCGGGATG
GTATACAATGATGTGTCTTGCCTTTCGAACTGGCTAAGTTCATCTTGTTA
TTTTTGGTTTGGCATGGTATACCATGATGTGTCTTGCCATTCGAACTGGC
TACATTGAACTGTTGGTTGTTAGTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003709-exon-sc0000030-1491911889:739652..741806 | TCONS_00003709-exon-sc0000030-1491911889:739652..741806 | Clytia hemisphaerica | exon |
| TCONS_00003709-exon-sc0000030-1510915933:739652..741806 | TCONS_00003709-exon-sc0000030-1510915933:739652..741806 | Clytia hemisphaerica | exon |
| TCONS_00003709-exon-sc0000030-1575043694:739652..741806 | TCONS_00003709-exon-sc0000030-1575043694:739652..741806 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000030 | supercontig | sc0000030:739652..741806 . |
Blast
The following BLAST results are available for this feature:
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