TCONS_00003716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003716
Unique NameTCONS_00003716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003716 ID=TCONS_00003716|Name=TCONS_00003716|organism=Clytia hemisphaerica|type=transcript|length=623bp
ATGATGAAACTTGACGAAAATGAGATACGATTTTTTATTTGCTGTTGGGA
TGATTTTAAATAACCATGGTGAGATGTTCCTGGAGATCTCTTCCGTTGCA
agattttcgaagatttttgTTCTTCTGCTTCTGTTCGTGGTGTTGCTCCT
TTAAACATCTTCATGTGTTGTTTAATATTGAAACAATTTTCATCTTCCCA
AACATAAGAAAGATATCGTCTTCGAATCCGCTGTGAAAGTCTCTTATACG
TCTCGTCCAATTCACTTTTACTCTCAAATAATCGGTACAAAACCCATTTC
CGTAATTTGGTAATATTGGGTTCACCCTGCACCCAGAACAACCCGACTAT
ATAGTTCCGGTTATTTTCAGTTTCATGTAGAAATGGCACGTAGTACTAAA
AATGGTGCCaaactttttatatttgatcaagcttgtttcaaaaaacttga
aagTCCGGAAAAGACAGATCACCGGGCCAATCAAGAGAGCGGCAACAGGC
CAAACCAAATAAGCCAAGATGCATAAAATAGCATGAATGAGAACGGGCAA
TCCAGAATCAATGTATTTCAGATATAGCATCGAcatcttaaaatatttct
tggattaATATGCTACCTGAAAC
Run BLAST on NCBI

transcript from alignment at sc0000030:895154..895776

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003716 ID=TCONS_00003716|Name=TCONS_00003716|organism=Clytia hemisphaerica|type=transcript|length=623bp|location=Sequence derived from alignment at sc0000030:895154..895776 (Clytia hemisphaerica)
GTTTCAGGTAGCATATtaatccaagaaatattttaagatgTCGATGCTAT
ATCTGAAATACATTGATTCTGGATTGCCCGTTCTCATTCATGCTATTTTA
TGCATCTTGGCTTATTTGGTTTGGCCTGTTGCCGCTCTCTTGATTGGCCC
GGTGATCTGTCTTTTCCGGActttcaagttttttgaaacaagcttgatca
aatataaaaagtttGGCACCATTTTTAGTACTACGTGCCATTTCTACATG
AAACTGAAAATAACCGGAACTATATAGTCGGGTTGTTCTGGGTGCAGGGT
GAACCCAATATTACCAAATTACGGAAATGGGTTTTGTACCGATTATTTGA
GAGTAAAAGTGAATTGGACGAGACGTATAAGAGACTTTCACAGCGGATTC
GAAGACGATATCTTTCTTATGTTTGGGAAGATGAAAATTGTTTCAATATT
AAACAACACATGAAGATGTTTAAAGGAGCAACACCACGAACAGAAGCAGA
AGAAcaaaaatcttcgaaaatctTGCAACGGAAGAGATCTCCAGGAACAT
CTCACCATGGTTATTTAAAATCATCCCAACAGCAAATAAAAAATCGTATC
TCATTTTCGTCAAGTTTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002076XLOC_002076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003716-exon-sc0000030-1491911889:895154..895776TCONS_00003716-exon-sc0000030-1491911889:895154..895776Clytia hemisphaericaexon
TCONS_00003716-exon-sc0000030-1510915933:895154..895776TCONS_00003716-exon-sc0000030-1510915933:895154..895776Clytia hemisphaericaexon
TCONS_00003716-exon-sc0000030-1575043694:895154..895776TCONS_00003716-exon-sc0000030-1575043694:895154..895776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:895154..895776 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.085695	0	0	0	0	0	0	0	0.0722136	0.193812	0.178592	0.22829	0.988792	1.92661	6.14421	6.6907	1.27435	2.86485	5.89919	1.61039	4.15824	2.17105	0.38719	0.587179	0	0	6.45104	4.04637	0.117509	0.327304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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