TCONS_00003752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003752
Unique NameTCONS_00003752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003752 ID=TCONS_00003752|Name=TCONS_00003752|organism=Clytia hemisphaerica|type=transcript|length=1640bp
GGTGCACATGGGCAGGATAGTGGTTGATAAGTGTTACATTTATTATGTTA
CTTTTTTGTTTAGTGAACAATTAACAAAGTAAGAAAATTAAATAGAAACA
CACACAGAATTTGTAGATGGATAAAATCCGTACTAAAGCAACTGGATTGC
CAGATGGCTGGGTGAAAGAAGTCGTTGTCAGAAAGAATGGAGCATCTGCT
GGCAAATCTGATGTCTACTATTACAGTCCTGAAGGTCGAAAATGTCGTTC
CAAGCCACAGATGATGCAATATCTACCGGACAACTTTGATATCGATAATT
TCGATTTTCGAGGAAGCTCCAATACTGATCGACTCCTCAAGAAGCGTAAC
AAACGGAAGAATGGATTCAACTTCGGCAAAGAGTTCAACATTCCGGGAAG
TTCGAGCAAGCCGACCCGTCAGACGAAGAAATCCCGAGAGAACATCCCGA
TATCGGTATTGCACACCGTCAATGTTGAAAATGACCGACGGAAACGAGAA
GTTAAGCGCGTTCCACGAATGGAAATGGAGTCGAAGCGACGACGGGCTGA
AGCTCTTACACAACGCCATTCCAAACCCAAACAATTATTCTGGCAAAGTC
GTCTCCAACACTTGAACACCAGAAACAAATTAACAGAGAAACCAACTGAA
CCAGCAAAATTAGACAACGTGATGAAAAATCTCCTCCCAGGATCAAAtaa
ccaatctcttttgaatTCGTTATGGTATTCCCTGTTCCTCAATAACAAAG
TGAGTGGCCAGCATGCCTCATTGAACGCCCTTCGTAAACACCCGACCGCC
CTTGTTAACCCTGATCAACCGTTCGCCGCCCCTTTCAACGTTAATGAGGA
GTTATTGAGAGAGCAAGAACGAAGTGTGGAAATGGCGAGAAGGAAATTGT
GTGAAGCTCAAGAACTTTTGAAAGCTCTTCAAGATGAAGATATGGAGTTT
GATGATTTGGACGATCTTTGAATGCCATTTGAACATCTTCCATATTAAtg
ctttttttggaaatttgactTTATTCTTTAATTAGACGATGGATAAACTG
ATTAGTAAAATCTTTGGAATTTTTTGATTGGCTTTGTTTTAATATTAAGT
GAAGTAGGAGGAAAACTTTACAATGTATCAAACTTGCATCGTGGAAGACA
AAGCTCATATTCATAGACATCGATAAATTCCCTTCATCGAGAAAGAGCAA
ATAGTGTGTCCGAAATAAGTGGAACGAAACCGATACAAAAAAAGTCACTT
TttatgagcaaaaaaatcatttgtttgATTAGCTTGGTTAATCGAATATC
AATAAAACAAACATGCCATATGTTTCTATGCCATTGAGTTTTCAAGCTGG
ACGCAATCAATtggttttcaagattttgatgTATGTATATTTTGATCCGC
TTTTTTCTGAACACTCTGTATATAACTAGATGGCTAGATTGCGGACTATA
AATTGACAATGAATTGTTTCTAGCCAACAAACTGTTGGATGAAAATAATg
acttattcaaaaaataaagatttttgctATCACTGAATTGAATTCATCGA
AAAAAATTCttggtcaatttttttcatctttaccACTTTATTTTAATCGG
TAATCTTACTGACCAAAGTCGGGTCTCCATTTTACTTAAG
Run BLAST on NCBI

protein sequence of TCONS_00003752-protein

>TCONS_00003752-protein ID=TCONS_00003752-protein|Name=TCONS_00003752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MDKIRTKATGLPDGWVKEVVVRKNGASAGKSDVYYYSPEGRKCRSKPQMM
QYLPDNFDIDNFDFRGSSNTDRLLKKRNKRKNGFNFGKEFNIPGSSSKPT
RQTKKSRENIPISVLHTVNVENDRRKREVKRVPRMEMESKRRRAEALTQR
HSKPKQLFWQSRLQHLNTRNKLTEKPTEPAKLDNVMKNLLPGSNNQSLLN
SLWYSLFLNNKVSGQHASLNALRKHPTALVNPDQPFAAPFNVNEELLREQ
ERSVEMARRKLCEAQELLKALQDEDMEFDDLDDL
Run BLAST on NCBI

transcript from alignment at sc0000031:570532..573075+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003752 ID=TCONS_00003752|Name=TCONS_00003752|organism=Clytia hemisphaerica|type=transcript|length=2544bp|location=Sequence derived from alignment at sc0000031:570532..573075+ (Clytia hemisphaerica)
GGTGCACATGGGCAGGATAGTGGTTGATAAGTGTTACATTTATTATGTTA
CTTTTTTGTTTAGTGAACAATTAACAAAGTAAGAAAATTAAATAGAAACA
CACACAGAATTTGTAGATGGATAAAATCCGTACTAAAGCAACTGGATTGC
CAGATGGCTGGGTGAAAGAAGTCGTTGTCAGAAAGAATGGAGCATCTGCT
GGCAAATCTGATGTCTACTATTACAGGTATACCAGTTGTAGTCGCTGATC
TCTAACTTcttgactggatcgggcttCCCATTTAAAAAGAAGCGTGTCCA
GTTTTAAAGCTCTGGTACTATTctgccatcttgttttcaattctggtcgA
CAAAAGCGCTATtcgaaattcgaacgttcgaaaatctaaggttaataaaa
tagaaaataactTGGCTAGTCGACTTTAAAACTAGAcacttttattgaaa
tttgttAGCAATTAACCCATCTAGTGTGTGAAGAAAATGTGATATCTgtg
gtggttgttgttgttgagcgGCTTTTTCAACAAAGTAAACAGAGgataga
aaatgaaaacaaataccATATTAAACCAAAactaaaaaacaattttaact
GGTTCTATCTATTATCTACCcgtgatttcaaaaaatgtgattAGTACaag
cgaaagtttatgctcgcgaaaagtCTTTTGTCTCAAAGTTGCAAAAGTAA
CTGTCGTAAATCTCACGATTTTCAATCTCCCGAAAGTTTCTGATGAAGTA
TACACTAAAGTATTCACTACTGGATCATTTATCTCTAACTTTTAGTCCTG
AAGGTCGAAAATGTCGTTCCAAGCCACAGATGATGCAATATCTACCGGAC
AACTTTGATATCGATAATTTCGATTTTCGAGGAAGCTCCAATACTGATCG
ACTCCTCAAGAAGCGTAACAAACGGAAGAATGGATTCAACTTCGGCAAAG
AGTTCAACATTCCGGGAAGTTCGAGCAAGCCGACCCGTCAGACGAAGAAA
TCCCGAGAGAACATCCCGATATCGGTATTGCACACCGTCAATGTTGAAAA
TGACCGACGGAAACGAGAAGTTAAGCGTATGTtgatttttcgtttttgtt
ttttcgttttattgTGAGTTGTAAAAAACAATGTATCCTAAGCAAACCgg
gaattcaatttggcggatggtcgaaaaagttttttcagagggaatttaat
tcgGCGGTcagcttgaaaaattaaatttggcggacgaaggacatttttgt
ccaaaaaacgccattaaaaaaggaaagacttgttttaaggcctgaaatgg
CACATATTTGGCGGAATAAATATAGAGCaacttaaatttggcgagaattc
aatttggcggatgatccaattttttggtaaatcCTTCTCTACACATTTCC
ATTTCATTTAGGCGTTCCACGAATGGAAATGGAGTCGAAGCGACGACGGG
CTGAAGCTCTTACACAACGCCATTCCAAACCCAAACAATTATTCTGGCAA
AGTCGTCTCCAACACTTGAACACCAGAAACAAATTAACAGAGAAACCAAC
TGAACCAGCAAAATTAGACAACGTGATGAAAAATCTCCTCCCAGGATCAA
AtaaccaatctcttttgaatTCGTTATGGTATTCCCTGTTCCTCAATAAC
AAAGTGAGTGGCCAGCATGCCTCATTGAACGCCCTTCGTAAACACCCGAC
CGCCCTTGTTAACCCTGATCAACCGTTCGCCGCCCCTTTCAACGTTAATG
AGGAGTTATTGAGAGAGCAAGAACGAAGTGTGGAAATGGCGAGAAGGAAA
TTGTGTGAAGCTCAAGAACTTTTGAAAGCTCTTCAAGATGAAGATATGGA
GTTTGATGATTTGGACGATCTTTGAATGCCATTTGAACATCTTCCATATT
AAtgctttttttggaaatttgactTTATTCTTTAATTAGACGATGGATAA
ACTGATTAGTAAAATCTTTGGAATTTTTTGATTGGCTTTGTTTTAATATT
AAGTGAAGTAGGAGGAAAACTTTACAATGTATCAAACTTGCATCGTGGAA
GACAAAGCTCATATTCATAGACATCGATAAATTCCCTTCATCGAGAAAGA
GCAAATAGTGTGTCCGAAATAAGTGGAACGAAACCGATACAAAAAAAGTC
ACTTTttatgagcaaaaaaatcatttgtttgATTAGCTTGGTTAATCGAA
TATCAATAAAACAAACATGCCATATGTTTCTATGCCATTGAGTTTTCAAG
CTGGACGCAATCAATtggttttcaagattttgatgTATGTATATTTTGAT
CCGCTTTTTTCTGAACACTCTGTATATAACTAGATGGCTAGATTGCGGAC
TATAAATTGACAATGAATTGTTTCTAGCCAACAAACTGTTGGATGAAAAT
AATgacttattcaaaaaataaagatttttgctATCACTGAATTGAATTCA
TCGAAAAAAATTCttggtcaatttttttcatctttaccACTTTATTTTAA
TCGGTAATCTTACTGACCAAAGTCGGGTCTCCATTTTACTTAAG

Coding sequence (CDS) from alignment at sc0000031:570532..573075+

>TCONS_00003752 ID=TCONS_00003752|Name=TCONS_00003752|organism=Clytia hemisphaerica|type=CDS|length=2565bp|location=Sequence derived from alignment at sc0000031:570532..573075+ (Clytia hemisphaerica)
ATGGATAAAATCCGTACTAAAGCAACTGGATTGCCAGATGGCTGGGTGAA
AGAAGTCGTTGTCAGAAAGAATGGAGCATCTGCTGGCAAATCTGATGTCT
ACTATTACAGTCCTGAAGGTCGAAAATGTCGTTCCAAGCCACAGATGATG
CAATATCTACCGGACAACTTTGATATCGATAATTTCGATTTTCGAGGAAG
CTCCAATACTGATCGACTCCTCAAGAAGCGTAACAAACGGAAGAATGGAT
TCAACTTCGGCAAAGAGTTCAACATTCCGGGAAGTTCGAGCAAGCCGACC
CGTCAGACGAAGAAATCCCGAGAGAACATCCCGATATCGGTATTGCACAC
CGTCAATGTTGAAAATGACCGACGGAAACGAGAAGTTAAGCGCGTTCCAC
GAATGGAAATGGAGTCGAAGCGACGACGGGCTGAAGCTCTTACACAACGC
CATTCCAAACCCAAACAATTATTCTGGCAAAGTCGTCTCCAACACTTGAA
CACCAGAAACAAATTAACAGAGAAACCAACTGAACCAGCAAAATTAGACA
ACGTGATGAAAAATCTCCTCCCAGGATCAAAtaaccaatctcttttgaat
TCGTTATGGTATTCCCTGTTCCTCAATAACAAAGTGAGTGGCCAGCATGC
CTCATTGAACGCCCTTCGTAAACACCCGACCGCCCTTGTTAACCCTGATC
AACCGTTCGCCGCCCCTTTCAACGTTAATGAGGAGTTATTGAGAGAGCAA
GAACGAAGTGTGGAAATGGCGAGAAGGAAATTGTGTGAAGCTCAAGAACT
TTTGAAAGCTCTTCAAGATGAAGATATGGAGTTTGATGATTTGGACGATC
TTTGAATGGATAAAATCCGTACTAAAGCAACTGGATTGCCAGATGGCTGG
GTGAAAGAAGTCGTTGTCAGAAAGAATGGAGCATCTGCTGGCAAATCTGA
TGTCTACTATTACAGTCCTGAAGGTCGAAAATGTCGTTCCAAGCCACAGA
TGATGCAATATCTACCGGACAACTTTGATATCGATAATTTCGATTTTCGA
GGAAGCTCCAATACTGATCGACTCCTCAAGAAGCGTAACAAACGGAAGAA
TGGATTCAACTTCGGCAAAGAGTTCAACATTCCGGGAAGTTCGAGCAAGC
CGACCCGTCAGACGAAGAAATCCCGAGAGAACATCCCGATATCGGTATTG
CACACCGTCAATGTTGAAAATGACCGACGGAAACGAGAAGTTAAGCGCGT
TCCACGAATGGAAATGGAGTCGAAGCGACGACGGGCTGAAGCTCTTACAC
AACGCCATTCCAAACCCAAACAATTATTCTGGCAAAGTCGTCTCCAACAC
TTGAACACCAGAAACAAATTAACAGAGAAACCAACTGAACCAGCAAAATT
AGACAACGTGATGAAAAATCTCCTCCCAGGATCAAAtaaccaatctcttt
tgaatTCGTTATGGTATTCCCTGTTCCTCAATAACAAAGTGAGTGGCCAG
CATGCCTCATTGAACGCCCTTCGTAAACACCCGACCGCCCTTGTTAACCC
TGATCAACCGTTCGCCGCCCCTTTCAACGTTAATGAGGAGTTATTGAGAG
AGCAAGAACGAAGTGTGGAAATGGCGAGAAGGAAATTGTGTGAAGCTCAA
GAACTTTTGAAAGCTCTTCAAGATGAAGATATGGAGTTTGATGATTTGGA
CGATCTTTGAATGGATAAAATCCGTACTAAAGCAACTGGATTGCCAGATG
GCTGGGTGAAAGAAGTCGTTGTCAGAAAGAATGGAGCATCTGCTGGCAAA
TCTGATGTCTACTATTACAGTCCTGAAGGTCGAAAATGTCGTTCCAAGCC
ACAGATGATGCAATATCTACCGGACAACTTTGATATCGATAATTTCGATT
TTCGAGGAAGCTCCAATACTGATCGACTCCTCAAGAAGCGTAACAAACGG
AAGAATGGATTCAACTTCGGCAAAGAGTTCAACATTCCGGGAAGTTCGAG
CAAGCCGACCCGTCAGACGAAGAAATCCCGAGAGAACATCCCGATATCGG
TATTGCACACCGTCAATGTTGAAAATGACCGACGGAAACGAGAAGTTAAG
CGCGTTCCACGAATGGAAATGGAGTCGAAGCGACGACGGGCTGAAGCTCT
TACACAACGCCATTCCAAACCCAAACAATTATTCTGGCAAAGTCGTCTCC
AACACTTGAACACCAGAAACAAATTAACAGAGAAACCAACTGAACCAGCA
AAATTAGACAACGTGATGAAAAATCTCCTCCCAGGATCAAAtaaccaatc
tcttttgaatTCGTTATGGTATTCCCTGTTCCTCAATAACAAAGTGAGTG
GCCAGCATGCCTCATTGAACGCCCTTCGTAAACACCCGACCGCCCTTGTT
AACCCTGATCAACCGTTCGCCGCCCCTTTCAACGTTAATGAGGAGTTATT
GAGAGAGCAAGAACGAAGTGTGGAAATGGCGAGAAGGAAATTGTGTGAAG
CTCAAGAACTTTTGAAAGCTCTTCAAGATGAAGATATGGAGTTTGATGAT
TTGGACGATCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002091XLOC_002091Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003752-proteinTCONS_00003752-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003752-exon-sc0000031-1491911889:570532..570757TCONS_00003752-exon-sc0000031-1491911889:570532..570757Clytia hemisphaericaexon
TCONS_00003752-exon-sc0000031-1510915933:570532..570757TCONS_00003752-exon-sc0000031-1510915933:570532..570757Clytia hemisphaericaexon
TCONS_00003752-exon-sc0000031-1575043694:570532..570757TCONS_00003752-exon-sc0000031-1575043694:570532..570757Clytia hemisphaericaexon
TCONS_00003752-exon-sc0000031-1491911889:571327..571607TCONS_00003752-exon-sc0000031-1491911889:571327..571607Clytia hemisphaericaexon
TCONS_00003752-exon-sc0000031-1510915933:571327..571607TCONS_00003752-exon-sc0000031-1510915933:571327..571607Clytia hemisphaericaexon
TCONS_00003752-exon-sc0000031-1575043694:571327..571607TCONS_00003752-exon-sc0000031-1575043694:571327..571607Clytia hemisphaericaexon
TCONS_00003752-exon-sc0000031-1491911889:571943..573075TCONS_00003752-exon-sc0000031-1491911889:571943..573075Clytia hemisphaericaexon
TCONS_00003752-exon-sc0000031-1510915933:571943..573075TCONS_00003752-exon-sc0000031-1510915933:571943..573075Clytia hemisphaericaexon
TCONS_00003752-exon-sc0000031-1575043694:571943..573075TCONS_00003752-exon-sc0000031-1575043694:571943..573075Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:570532..573075 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.3378	21.9521	11.0881	10.3536	60.5486	49.2994	58.9995	63.7988	34.0957	37.8596	27.1273	22.6538	18.3847	17.6886	19.2867	19.1113	31.23	25.5239	11.7542	17.071	16.1801	17.3276	16.2599	17.0051	27.3371	27.9136	23.4566	16.5802	19.0421	16.6534
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001739Methyl_CpG_DNA-bd
IPR025884MeCpG-bd_2/3_C_dom
IPR016177DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Blast
[Close]
BLAST of TCONS_00003752 vs. Swiss-Prot (Human)
Match: MBD2 (Methyl-CpG-binding domain protein 2 OS=Homo sapiens GN=MBD2 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.661e-31
Identity = 87/262 (33.21%), Postives = 143/262 (54.58%), Query Frame = 3 
Query:  129 RTKATGLPDGWVKEVVVRKNGASAGKSDVYYYSPEGRKCRSKPQMMQYLPDNFDIDNFDFRGSSNTDXXXXXXXXXXXXXXXXXEFNIPG-SSSKPTRQTKKSRENIPISVLHTVNVENDRRKREVKRVPRMEMESKRRRAEALTQRHSKPKQLFWQSRLQHLNTRNKLTEKPTEPAKLDNVMKNLLPGSNNQSLLNSLWYSLFLNNK-VSGQHASLNALRKHPTALVNPDQPFAAPFNVNEELLREQERSVEMARRKLCEA 908
            R     LP GW KE V+RK+G SAGKSDVYY+SP G+K RSKPQ+ +YL +  D+ +FDFR        L+K  +R       +    P  +++ P RQT    +     V    N  +++ K + +R+                  + +P+QLFW+ RLQ L+  + +TE+  +  +L   ++ + PGSN+++LL+++  +L  ++  ++GQ ++  A+ K+P   +N  QP    F V +E +R+QE  V+  R+KL EA
Sbjct:  149 RMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQKNKQRLRNDPLNQNKGKPDLNTTLPIRQTASIFKQ---PVTKVTNHPSNKVKSDPQRM------------------NEQPRQLFWEKRLQGLSASD-VTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHTSSAPITGQVSA--AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEA 386
The following BLAST results are available for this feature:
BLAST of TCONS_00003752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MBD21.661e-3133.21Methyl-CpG-binding domain protein 2 OS=Homo sapien... [more]
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