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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003755 ID=TCONS_00003755|Name=TCONS_00003755|organism=Clytia hemisphaerica|type=transcript|length=5163bp
ACATAATAGCCTATTATTGTCTTTTTTCCACCGAATCAATATTTGATCAA
CATCTATTTTCTCTTAACCTAACATGAACAATAGCGTAATCAAATATTCA
GCATTTTAAATTCCGAGATAGAAACATAATTGATTAACCAATGAGCGTTG
AGGGATGAAATCACATGTCTATAGAGGCTTTCAAAAAAGCACTATAGATT
TGACTTAAAGATTGCATGACAACGAGAGTGTAGTTTTGATGTTAAGAAAC
TTCAGTAACATCATAAcacataaaaaaagaaaagtctcGTTTGAGTTgag
gattgtttttttttgtgttagAGAGAAAGAGACGCTTTTCTTGAAATGGT
GTATGAATTTGCGCACACCATAACACACTACAAATACTGCACACTCTCTT
ACAAACACTGAAAAGTACTGCACAAGAGAAGCTACACCTCTATCACACAG
AGAAATTTTATATGTTACAAAAGAGAAGTTGAAGGACAACAAACTTGAGC
ATTTTTCGTTAAcgtgaagaaaaaagaagagagaatattttaaaaataaa
agagctctattacacaaaaatataaaggaaaatttataGATGTATGTATA
AACTACTATTAGAACAGAGAAATTAAATATAAGAGATAGAGATACACATT
TATAAACAACAATGCTACACGCTGAAGAGTACTACGCACCCACCGATGTC
GGACTAAAGAAAGGCGAAGCCATGTATCAAATGGCTAACACAAACATTTT
GCAGGAAAACATGGGGCAACCTTTAAACGACAAAGTTGGTAACACAACAT
TATTAAACGAAATGGGTGAATTTAAACCTATGAATGGACAAAATGGATCA
AGTAATATGGACGAACAAAGAGCTCTTCAACTTGCTTTTGAACTTTCTAT
GTTGGGTTTGACAAGTGAGGAAGAGATGAGTTATAATGAGTTACGCATGA
AAAAATCGATGAACATGACGGAATGTGTTCCAGTCCCTAGTTCGGAGCAT
GTGGCTGAAATCGTTGGCCGTCAAgGCTGCAAAATCAAAGCTCTTCGCGC
CAAAACCAACACATACATCAAAACACCAGTTCGTGGAGAAGAACCTGTCT
TTGTCGTCACAGGTCGTAAGGAGGATGTCGGTATGGCTAAACGAGAGATC
CTGCAAGCAGCTGAACACTTCAGTCAAATCCGTGCTTCAAGACGAAACAG
TTCTTCATTATCACCACTTGGTTCCCCTGCACCAACAGCTCCTGGCCACA
TCACGAAACAAGTTCGAGTTCCTTACAGAGTTGTTGGTCTCGTTGTTGGA
CCTAAAGGCTCTACCATCAAACGCATCCAACAAGCTACCAACACTTATAT
TGTGACACCTTCACGTGATAAGGAGCCCATCTTTGAAGTCACAGGTCTTC
CTGATAATGTTGATCGAGCCAAACGTGAAGTTGAACAACACATTGCTCTC
CGAACAGGTGGCATCTTTGATCCAACTCATCCAGAGCTGACTGATCAACT
CTTGAACGGATTTGGCAACTCCAGCTTGTTCTCACCAACCGGCTCCTCCA
GCGGTGGTAGCTTCTCATCCCTCCTGGATAATCACTCGACCAATCCACTC
TGTCAACGCTCACATTCGGTGGATTCGTTCAGTTACCTTAGTGGACAATC
TAATGCTTCATCTAAATTCTCAGATCTCAGCTCAGCTGGAACCAGCCCAT
tcaacaataacaacaacaacgCTTTCTTCTGTGACACTGTCATCCCATCA
CCAACAGCTGACATTGAAAATGGTATGGGACAATTCGACCCAGCTCCTGG
TTCACCTGCACCAAGCTTATGGCCAGAAATGATGATTCCACGCTCAGCAG
CCATTGGACGACTGGGTGGCCCTCAAATGCAACCGATGCCACCAACCAGA
TCTCTCAGTGTCAGTACATTTACACCTGAGAATAGTGAGGTTCCTCAACT
CCGACGTTTGTTAAGCGAATCAGCTGCTGACCCATCTGCTGACTTACAGT
CCACCTACTCTCACTTTAACGGAACCACAGTCACCAGTACTGTTCAATCA
CCAATGATTCCTGAAGCTTCAATCATTGATATGACCAAGGTCAACACCAG
TGACGGAGAATCACAATCTTCAAGCCCCGATTGGATGGCCAACAAGCAGA
ATGGTTTACCAACCCAACAACCAGTACCTGGCAAGAATCAATGCTTCATT
TGTAATACTGGTAAAGTTGTGGCAGCTCTGGTACCTTGTGGTCATAACTT
GTTCTGTCTACCATGTGCTGAGCAGATGAAAGAGAACGAAGGAGATTGTC
CAGTTTgccaaaagaaagttgaagcCTTCCTAAGAATCATCTCTTAAATG
GAATGTGAGAAGGAACCCCCTCGAAAAACGAAAAAGCCttgtaagaaaga
aaattttgacttttattttttttggtctCGTTTTTGGAGACAACTTTTCT
TACTTCGACTTTTAGAACATTATAAAGGGTAGTGATTTGCCTCCTCTCAA
CAACGTGAAAAGGCTTTCTTTTTTATCCACAAAAAGGTTGGTGATATGAT
ATGTCTTCCCTTTTTGTTAAAGTTTTGTCTCGAGATAATAATCACTAACC
TTTATCCAACCCTCTCTTATCCTGCTGTATAGAAAAACTTCTTTTCGGGA
TTTTCGAATGCGTTGGTCTTCTTTTTTTACTGTACATATATAATCAGAAG
TTTCTGAAGAGAGGGGGGAAACGATACTTTCATGAGCGCACGCGCGACAA
TATGACACGATCCTAAAACGAGAGGGTGTATCAAAGAAAGTATCCAttca
gaatttaaaaatattaaaaaagaatttaataataaaaaagGGTTATTATa
gaaaaagattattttttaaacagataaaatttttttccagaacTAATAAT
TTGTATTGTATTTTGTCAAACAGTCAGTATTTTTGTTGCCCTGTTCATTA
TTATTTTAGTCCAAAGTGTTTTTTGTTAATCCATCTCTCTTTTCCTTTTC
CTTGATCTACTACTTCAGTGCTTTCTGCAGCATTTAGGTTCTACCTGAAC
TATTTTAAAACGTTTAGTGTTGTACAGGCTAGTTTCAATTTCTTAGACTT
TAGAGTCTAGATCTTTGTCTAATTCTGAACTGTGGAAAGCAGACTTTTGG
GTAATTTAAAAATGGTTACACTTTAGAAAAGGACTAAGAGAGGTCGATTG
ACAATATCCACTCTAAAGATAAAATTTAGCTAAATAATTTCATCGCTTTA
TTAATAATATATAGTTTAAGAGAGAATTTTACTTGAGGTTTTTTGTCACT
AAAAATTATTACGCTAGGAGAGAATAATAATGGTATTATTATAATTGAAA
CATTGTGAAaggtttatttttttatataaatattaCTACTAAAGAAAGAT
ATTATTgttttttttcactaaaaattaTTACGCTAGGAGAGAATAATAAT
GGTATTATTATAATTGAGACATTGTGAAaggtttatttttttatataaat
attaCTACTAAAGAAAGATATTATTGTTTTTGTCCTATCAGAGAAGCTAT
GACACACTTTACCTAacacaaaaacatcaaaaacaatacaaaaaaaacaa
tttttgataattttttatcaaggaattattttttttcgtttttgttgttT
ATAAAACGAACACTTTACTTAATATAGTTATTATTATGATCATagagaaa
gaaaattattaaatacATTTTGACCTATATCGAGAGACTGAGTGATGGTG
CATTTTTGAGTGtgcgagagaaaaaaaatactttcgaatatgataatttt
ttataaaatataaatagttgaaaaaggttggaaaatattattattattta
gaaAACACGCCTGAAAAATGTTCGTTTTTCAGTAATTCATTTTGCATTTT
AGAGTTTTTGTAGTATATATGCTTATAATTATAATTAGTGATATgggttt
atttttttcttctgttcAATTTTAACGGTTTATTTTTGTCTTTCTCACTC
AACaaattattttgcaattttaacctttccttttttttgtatattttttc
ataGCGGCAAAAATTATCTTCTCAAAGTTAAAGAGTCATTAATCTTAAAT
TGGTCTAGGTAATAGGTATGCTTTCCAAATCAATTAAGAGAAACATCAAG
AGTGCTTTCCTGTATATTGCAATTTTCCTGTCCCGAAGTAGTTATCTTAA
ATTGCCGAAAATCAATCTTTCTCATTATTTGTTATGGTGAAATTATAATC
AAAGACTTTGGGCTTGCTTAGCCAATTTTCTTGATGATGTGTTTATTCAT
TTCAATTGTCACAAACTTCCTGAATTTGTCTCGATTAGTTAAGTCCCagc
tttcttttttcaaattcataatggcggccTAATTATTTTGTTGGTTACAA
GGAAACAAAGTTGcggaaaacattttcaaattggtCAGCTTTTTAACGAC
TTCCTCTGATGGtcattttcatcttttcttttaattacgttgagaaaaac
attcaaaagaaGAGCGGAACCTTTCTTCATAAATTACCATGTGTTTGTGT
TTACTTTAGatgtttcgaatttttgaaTGTCTTTCCCATTGCATTCAGTG
AGGTATTTTGTGACATGATAATTAATGTTTTATTCACTACTCATCTGAAA
ATTAGCTTAGTTTTAGTAAcccattttaagaaaatttgcactccttaaaa
aatgcactttttacAGACAGCACCTACTTCGATTTATGAAACGACCAGAT
TATTTTGATGTGTTTGTTTGTGACAATTGTAAAAGAAAAAGTATATTTTG
CTGTGAAAAATGCTATAACATAAAAtgtttgataaaataattattagTAG
TAGATAACGataatgatattttttgctTTATATATATAATTAATACTACT
TTTTCTGTTAGAGATTTATACCTtatatacaataataaaaaatctACTTT
GCAATGACCTTACTACTTATGAGAGATGAGAAAACGAAATTATTGTATGT
AACGAAAACAACAATTTTATGATATATAATAATGACGATTTCGcctattt
tttaatatttaaaatgtatatgtattatcagacaatattctccaaaaaat
tattattactaTACAGTCGaatagaaaaatttttatctttcaaGTGAAAG
AATTCcattgttg Run BLAST on NCBI protein sequence of TCONS_00003755-protein >TCONS_00003755-protein ID=TCONS_00003755-protein|Name=TCONS_00003755-protein|organism=Clytia hemisphaerica|type=polypeptide|length=561bp
MLHAEEYYAPTDVGLKKGEAMYQMANTNILQENMGQPLNDKVGNTTLLNE
MGEFKPMNGQNGSSNMDEQRALQLAFELSMLGLTSEEEMSYNELRMKKSM
NMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVT
GRKEDVGMAKREILQAAEHFSQIRASRRNSSSLSPLGSPAPTAPGHITKQ
VRVPYRVVGLVVGPKGSTIKRIQQATNTYIVTPSRDKEPIFEVTGLPDNV
DRAKREVEQHIALRTGGIFDPTHPELTDQLLNGFGNSSLFSPTGSSSGGS
FSSLLDNHSTNPLCQRSHSVDSFSYLSGQSNASSKFSDLSSAGTSPFNNN
NNNAFFCDTVIPSPTADIENGMGQFDPAPGSPAPSLWPEMMIPRSAAIGR
LGGPQMQPMPPTRSLSVSTFTPENSEVPQLRRLLSESAADPSADLQSTYS
HFNGTTVTSTVQSPMIPEASIIDMTKVNTSDGESQSSSPDWMANKQNGLP
TQQPVPGKNQCFICNTGKVVAALVPCGHNLFCLPCAEQMKENEGDCPVCQ
KKVEAFLRIIS Run BLAST on NCBI transcript from alignment at sc0000031:699143..709442+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003755 ID=TCONS_00003755|Name=TCONS_00003755|organism=Clytia hemisphaerica|type=transcript|length=10300bp|location=Sequence derived from alignment at sc0000031:699143..709442+ (Clytia hemisphaerica)
ACATAATAGCCTATTATTGTCTTTTTTCCACCGAATCAATATTTGATCAA
CATCTATTTTCTCTTAACCTAACATGAACAATAGCGTAATCAAATATTCA
GCATTTTAAATTCCGAGATAGAAACATAATTGATTAACCAATGAGCGTTG
AGGGATGAAATCACATGTCTATAGAGGCTTTCAAAAAAGCACTATAGATT
TGACTTAAAGATTGCATGACAACGAGAGTGTAGTTTTGATGTTAAGAAAC
TTCAGTAACATCATAAcacataaaaaaagaaaagtctcGTTTGAGTTgag
gattgtttttttttgtgttagAGAGAAAGAGACGCTTTTCTTGAAATGGT
GTATGAATTTGCGCACACCATAACACACTACAAATACTGCACACTCTCTT
ACAAACACTGAAAAGTACTGCACAAGAGAAGCTACACCTCTATCACACAG
AGAAATTTTATATGTTACAAAAGAGAAGTTGAAGGACAACAAACTTGAGC
ATTTTTCGTTAAcgtgaagaaaaaagaagagagaatattttaaaaataaa
agagctctattacacaaaaatataaaggaaaatttataGATGTATGTATA
AACTACTATTAGAACAGAGAAATTAAATATAAGAGATAGAGATACACATT
TATAAACAACAATGCTACACGCTGAAGAGTACTACGCACCCACCGATGTC
GGACTAAAGAAAGGCGAAGCCATGTATCAAATGGCTAACACAAACATTTT
GCAGGAAAACATGGGGCAACCTTTAAACGACAAAGTTGGTAACACAACAT
TATTAAACGAAATGGGTGAATTTAAACCTATGAATGGACAAAATGGATCA
AGTAATATGGACGAACAAAGAGCTCTTCAACTTGCTTTTGAACTTTCTAT
GTTGGGTTTGACAAGTGAGGAAGAGATGAGTTATAATGAGTTACGCATGA
AAAAATCGATGAACATGACGGAATGTGTTCCAGTCCCTAGTTCGGAGCAT
GTGGCTGAAATCGTTGGCCGTCAAggtatgttttcatttttatttcattt
aatttgGCTTTGTTTTGGATGACATTCTACGATTTTTCTTTTACTGAAAT
TAAGATTTTCATTCTTAAAcgtttcagattttttttatgaatcttAGCTT
TGTATACAGCAAGGCATGATTTTTGATAGATTTTCTTCTAAAAGTTTGAA
TGTTGCTATTTCTCAATGCGATTGCCACTCCCCGCTGTATAttcaattct
gttttgttttttgttgtgatttttttgCCGCGCTTCTTTCGTCGAAAacc
ttttgtttcaattttttaaacagaCATTTGTCCATGCTGAACATAAGCGC
GAGAAAGTTTTGACCTAGCGTACATAACTCTACTGCGAGCATTCATAAAC
AACATTACTTGCAGCTTTACTACTCAAAAAAGGCCATGTgcgtttttgtt
tattttttaaagttttcccgcgtacaatttttttctttgaaagtttttgt
ttacttttcacgAAGACGTAATAAACATTTTATACTTTTTCTCACACAAT
AATAGACGATCAATATTTGTTTAGAGTGAGAGAGTACTTCTTATAAAAGC
TGAGAAAAATAGTTCTtcacaaaaaatataatatcagTAATTTTTAGCAA
ACAAATCTCGACGAAAGGATAACTTAGATTAATCCTTCTCAATTAATTTA
ACACATACTTTCACACGTAACATAATTTTCTATGCTAAAACAATCTAATT
TTCTTATCTAAACATCAATCActagaaaattataaaaaacggAGAAAATT
CAACAATCTTTTTTCTCTTTGCTAATAATATTGTGTCTCCAGCCTCCTAG
AGAGTGTCTTGGGGAATCATAGCCTGATATTTtcagtattttgaaaaata
tttgcaCGAACGCGAGAAGTCTTTCAAGGGGTAGGaaagtttttaaattc
tcatGTTTAATAACCTCAGTTTTAAATCAATGAATACAGAATCAGAAGAT
TTTTTCTTGTGCACAAAATGATTTGGTTTTGATTGATTTCTCATTTGGTT
AGAAATAATTCACACACTCACTCACTTTCGATTGTTAGTAAAATCTCATG
AAAAGTTGATGAATAAAGCAAGTATTGAATCCCAATAGACGCTTCGTGCT
GCGAAATAATATTAATGAATTTTTAAGGTCCtcaatcaagattttgaata
tctttaatATTATGGTGAACATAGCAttatctttttctgaaaatctttgA
ATGACTTTTTACTTGAGTTActtatacatttttttcatttacttttcttc
ttttattatctctcatatatatttttttggtcAATCATCTTTTCCTGAAA
TATTAAAACCTATTTTTCGatcaactttttataaaaaaatccggtctcat
ttttgtttttatctgcaaaacgtgttttttttctttttctttattatttg
tAGTTTATCATATTTTCCTTGCAATAAAGCTTGTTCCTTTGATCTCATCG
AAAGTCATTTTAAATCAACTTATAAACTTTTTacctaaaaagttgaaaat
aaagcTCTCAAAAAGTCGTAATTAGGAAGCTTATTTTCTCGATGCTTTGC
AATCAAGCGTTTTCAATCCGAAAAAAAACGTCTTTAAAATGGAAGAAAAC
ATGTGTTGGAAAATATACACTAGTGAACACGAAGAAaggaataaatcttt
ttttttcattttaatttctttttacttcaaaaaacctttcccctttttta
ttttggtgacACGACCGCATACTCTTTAGATACGATATATAACGAGAAAA
AAACTCTTAGTTTCGAGACTGTTcagatttttgttttaaatacaGTATAG
TCCATCATAACATATGATAAAACAAATTTGCAACAATGTACAAAAAATTA
AGGggataaaacattttaaaactctTTTCTCTAAACGTTGCTCTCTCGTA
ATTCTTTTTAGTTTACAGCTGCCATCTTTCTCTGAAGCATTATCAAAAAT
GTGGCATAACTTTCGTCCCCCTTCTCTTTGTTAATCTATACTAATTACCT
TAGCAGGGTTTTAAACTCTATAGACGTGCCTGTTTTTCCCTTCAAAAAGT
ACCTTTAAATTCACACATTGATATGTTAAAGAATTTTCACATCCCTTTTC
TTCCCTCTTTTGTTTCTCATCTCCAGTCCACCCCAGTCTTCTTTTGGATT
AAAGTTGTGCATAGCAGCAATTTTCCTTTTAATACTGGAACACTTTTTTT
AAGTAAAGATAAAATCTCTCTGttttagttttcaaaaagattgaaagata
GACAGttatcttttttcaaataaaaactgttGAAACCGAAATATATTTTC
GCAATGATatctattccaaaaaaatatgCAATCTGTACTTTTTTTAACAT
TGCTCTTGAGGGATAAAAGAAACAATTATAGGTACATAATGCCTCTTCGG
TATtaagttcaaattttcaaaaagtacaccttcttttttataaaaacatc
ctaaattttcgaagccttaggatgtttttagttttttgagttttaagcct
aaaaatgttcttgacataatcttattttcaccaatttttgagtatttttg
tccattttcctaagaaattagtcgttttagagtctgcgaagccttaaaat
gttcttaacttgttcttaacattttggccatcgaagccttatgttcttat
ttagttTATTCTTATCCAGTAGATAAAATCTTTTTCACATTCAGTGTTaa
acaaaacttcaaaatgcctATCTTtcttgtttacatttgaaaactcGACC
TTGCTATAAGGTCAATCAACGTCATTAATCATTTACAgttgaagaaaaaa
tcttttgttctGTTTATTTACTTATATTGTTAAGTTTTGTATGCACACAA
GTGGAAGTTATATACATAAGCTTTTTGTTTACACATTTGTTCAAGATCAT
ACATAACCATACTTTCAATTATAACCACCTTTTGTAAACCTCTTTCCGTC
TTTTACACTCTCGGTGCTGGCACACAATCATATAAGATCAAACTTATGGT
TTCAGTCCTGTCTATCAAGAATTCAGAATGGAGAAAGAATTCTATCTAAT
CGGAATTCAGCATCGCAAGTTCTTCATTTTTGCTGACCAAACAATGTAGC
CTGCTGTCGGACCTTCTGTTTTCACATCATAGAAAAATTGTTATAGAAAA
TAAGGTTACATCTGATGATTGCTTAGAGCATGAAACTCCGAGTTATggat
ttataaatttttggttttgaaatatatttttgattagaAAATAAGCTCAT
AATCTCTCGGTTCTCTTTTTTTAGGCTGCAAAATCAAAGCTCTTCGCGCC
AAAACCAACACATACATCAAAACACCAGTTCGTGGAGAAGAACCTGTCTT
TGTCGTCACAGGTCGTAAGGAGGATGTCGGTATGGCTAAACGAGAGATCC
TGCAAGCAGCTGAACACTTCAGTCAAATCCGTGCTTCAAGACGAAACAGT
TCTTCATTATCACCACTTGGTTCCCCTGCACCAACAGCTCCTGGCCACAT
CACGAAACAAGTTCGAGTTCCTTACAGAGTTGTTGGTCTCGTTGTTGGAC
CTAAAGGCTCTACCATCAAACGCATCCAACAAGCTACCAACACTTATATT
GTGACACCTTCACGTGATAAGGAGCCCATCTTTGAAGTCACAGGTCTTCC
TGATAATGTTGATCGAGCCAAACGTGAAGTTGAACAACACATTGCTCTCC
GAACAGGTGGCATCTTTGATCCAACTCATCCAGAGCTGACTGATCAACTC
TTGAACGGATTTGGCAACTCCAGCTTGTTCTCACCAACCGGCTCCTCCAG
CGGTGGTAGCTTCTCATCCCTCCTGGATAATCACTCGACCAATCCACTCT
GTCAACGCTCACATTCGGTGGATTCGTTCAGTTACCTTAGTGGACAATCT
AATGCTTCATCTAAATTCTCAGATCTCAGCTCAGCTGGAACCAGCCCATt
caacaataacaacaacaacgCTTTCTTCTGTGACACTGTCATCCCATCAC
CAACAGCTGACATTGAAAATGGTATGGGACAATTCGACCCAGCTCCTGGT
TCACCTGCACCAAGCTTATGGCCAGAAATGATGATTCCACGCTCAGCAGC
CATTGGACGACTGGGTGGCCCTCAAATGCAACCGATGCCACCAACCAGAT
CTCTCAGTGTCAGTACATTTACACCTGAGAATAGTGAGGTTCCTCAACTC
CGACGTTTGTTAAGCGAATCAGCTGCTGACCCATCTGCTGACTTACAGTC
CACCTACTCTCACTTTAACGGAACCACAGTCACCAGTACTGTTCAATCAC
CAATGATTCCTGAAGCTTCAATCATTGATATGACCAAGGTCAACACCAGT
GACGGAGAATCACAATCTTCAAGCCCCGATTGGATGGCCAACAAGCAGAA
TGGTTTACCAACCCAACAACCAGTACCTGGCAAGAATCAATGCTTCATTT
GTAATACTGGTAAAGTTGTGGCAGCTCTGGTACCTTGTGGTCATAACTTG
TTCTGTCTACCATGTGCTGAGCAGATGAAAGAGAACGAAGGAGATTGTCC
AGTTTgccaaaagaaagttgaagcCTTCCTAAGAATCATCTCTTAAATGG
AATGTGAGAAGGAACCCCCTCGAAAAACGAAAAAGCCttgtaagaaagaa
aattttgacttttattttttttggtctCGTTTTTGGAGACAACTTTTCTT
ACTTCGACTTTTAGAACATTATAAAGGGTAGTGATTTGCCTCCTCTCAAC
AACGTGAAAAGGCTTTCTTTTTTATCCACAAAAAGGTTGGTGATATGATA
TGTCTTCCCTTTTTGTTAAAGTTTTGTCTCGAGATAATAATCACTAACCT
TTATCCAACCCTCTCTTATCCTGCTGTATAGAAAAACTTCTTTTCGGGAT
TTTCGAATGCGTTGGTCTTCTTTTTTTACTGTACATATATAATCAGAAGT
TTCTGAAGAGAGGGGGGAAACGATACTTTCATGAGCGCACGCGCGACAAT
ATGACACGATCCTAAAACGAGAGGGTGTATCAAAGAAAGTATCCAttcag
aatttaaaaatattaaaaaagaatttaataataaaaaagGGTTATTATag
aaaaagattattttttaaacagataaaatttttttccagaacTAATAATT
TGTATTGTATTTTGTCAAACAGTCAGTATTTTTGTTGCCCTGTTCATTAT
TATTTTAGTCCAAAGTGTTTTTTGTTAATCCATCTCTCTTTTCCTTTTCC
TTGATCTACTACTTCAGTGCTTTCTGCAGCATTTAGGTTCTACCTGAACT
ATTTTAAAACGTTTAGTGTTGTACAGGCTAGTTTCAATTTCTTAGACTTT
AGAGTCTAGATCTTTGTCTAATTCTGAACTGTGGAAAGCAGACTTTTGGG
TAATTTAAAAATGGTTACACTTTAGAAAAGGACTAAGAGAGGTCGATTGA
CAATATCCACTCTAAAGATAAAATTTAGCTAAATAATTTCATCGCTTTAT
TAATAATATATAGTTTAAGAGAGAATTTTACTTGAGGTTTTTTGTCACTA
AAAATTATTACGCTAGGAGAGAATAATAATGGTATTATTATAATTGAAAC
ATTGTGAAaggtttatttttttatataaatattaCTACTAAAGAAAGATA
TTATTGTTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTCCCTTTTTGTTAAAGTTTTGTCTCGAGATAATAATCAC
TAACCTTTATCCAACCCTCTCTTATCCTGCTGTATAGAAAAACTTCTTTT
CGGGATTTTCGAATGCGTTGGTCTTCTTTTTTTACTGTACATATATAATC
AGAAGTTTCTGAAGAGAGGGGGGAAACGATACTTTCATGAGCGCACGCGC
GACAATATGACACGTTCCTAAAACGAGAGGGTGTATCAAAGAAAGTATCC
AttcagaatttaaaaatattaaaaaaagaatttaataataaaaaagGGTT
ATTATagaaaaagattattttttaaacagataaaatttttttccagaacT
AATAATTTGTATTGTATTTTGTCAAACAGTCAGTATTTTTGTTGCCCTGT
TCATTATTATTTTAGTCCAAAGTGTTTTTTGTTAATCCATCTCTCTTTTC
CTTTTCCTTGATCTACTACTTCAGTGCTTTCTGCAGCATTTAGGTTCTAC
CTGAACTATTTTAAAACGTTTAGTGTTGTACAGGCTAGTTTCAATTTCTT
AGACTTTAGAGTCTAGATCTTTGTCTAATTCTGAACTGTGGAAAGCAGAC
TTTTGGGTAATTTTAAAATGGTTACACTTTAGAAAAGGACTAAGAGAGGT
CGATTGACAATATCCACTCTAAAGATAAAATTTAGCTAAATAATTTCATC
GCTTTATTAATAATATATAGTTTAAGAGAGAATTTTACTTGAGgtttttt
ttcactaaaaattaTTACGCTAGGAGAGAATAATAATGGTATTATTATAA
TTGAGACATTGTGAAaggtttatttttttatataaatattaCTACTAAAG
AAAGATATTATTGTTTTTGTCCTATCAGAGAAGCTATGACACACTTTACC
TAacacaaaaacatcaaaaacaatacaaaaaaaacaatttttgataattt
tttatcaaggaattattttttttcgtttttgttgttTATAAAACGAACAC
TTTACTTAATATAGTTATTATTATGATCATagagaaagaaaattattaaa
tacATTTTGACCTATATCGAGAGACTGAGTGATGGTGCATTTTTGAGTGt
gcgagagaaaaaaaatactttcgaatatgataattttttataaaatataa
atagttgaaaaaggttggaaaatattattattatttagaaAACACGCCTG
AAAAATGTTCGTTTTTCAGTAATTCATTTTGCATTTTAGAGTTTTTGTAG
TATATATGCTTATAATTATAATTAGTGATATgggtttatttttttcttct
gttcAATTTTAACGGTTTATTTTTGTCTTTCTCACTCAACaaattatttt
gcaattttaacctttccttttttttgtatattttttcataGCGGCAAAAA
TTATCTTCTCAAAGTTAAAGAGTCATTAATCTTAAATTGGTCTAGGTAAT
AGGTATGCTTTCCAAATCAATTAAGAGAAACATCAAGAGTGCTTTCCTGT
ATATTGCAATTTTCCTGTCCCGAAGTAGTTATCTTAAATTGCCGAAAATC
AATCTTTCTCATTATTTGTTATGGTGAAATTATAATCAAAGACTTTGGGC
TTGCTTAGCCAATTTTCTTGATGATGTGTTTATTCATTTCAATTGTCACA
AACTTCCTGAATTTGTCTCGATTAGTTAAGTCCCagctttcttttttcaa
attcataatggcggccTAATTATTTTGTTGGTTACAAGGAAACAAAGTTG
cggaaaacattttcaaattggtCAGCTTTTTAACGACTTCCTCTGATGGt
cattttcatcttttcttttaattacgttgagaaaaacattcaaaagaaGA
GCGGAACCTTTCTTCATAAATTACCATGTGTTTGTGTTTACTTTAGatgt
ttcgaatttttgaaTGTCTTTCCCATTGCATTCAGTGAGGTATTTTGTGA
CATGATAATTAATGTTTTATTCACTACTCATCTGAAAATTAGCTTAGTTT
TAGTAAcccattttaagaaaatttgcactccttaaaaaatgcacttttta
cAGACAGCACCTACTTCGATTTATGAAACGACCAGATTATTTTGATGTGT
TTGTTTGTGACAATTGTAAAAGAAAAAGTATATTTTGCTGTGAAAAATGC
TATAACATAAAAtgtttgataaaataattattagTAGTAGATAACGataa
tgatattttttgctTTATATATATAATTAATACTACTTTTTCTGTTAGAG
ATTTATACCTtatatacaataataaaaaatctACTTTGCAATGACCTTAC
TACTTATGAGAGATGAGAAAACGAAATTATTGTATGTAACGAAAACAACA
ATTTTATGATATATAATAATGACGATTTCGcctattttttaatatttaaa
atgtatatgtattatcagacaatattctccaaaaaattattattactaTA
CAGTCGaatagaaaaatttttatctttcaaGTGAAAGAATTCcattgttg
Coding sequence (CDS) from alignment at sc0000031:699143..709442+ >TCONS_00003755 ID=TCONS_00003755|Name=TCONS_00003755|organism=Clytia hemisphaerica|type=CDS|length=3372bp|location=Sequence derived from alignment at sc0000031:699143..709442+ (Clytia hemisphaerica)
ATGCTACACGCTGAAGAGTACTACGCACCCACCGATGTCGGACTAAAGAA
AGGCGAAGCCATGTATCAAATGGCTAACACAAACATTTTGCAGGAAAACA
TGGGGCAACCTTTAAACGACAAAGTTGGTAACACAACATTATTAAACGAA
ATGGGTGAATTTAAACCTATGAATGGACAAAATGGATCAAGTAATATGGA
CGAACAAAGAGCTCTTCAACTTGCTTTTGAACTTTCTATGTTGGGTTTGA
CAAGTGAGGAAGAGATGAGTTATAATGAGTTACGCATGAAAAAATCGATG
AACATGACGGAATGTGTTCCAGTCCCTAGTTCGGAGCATGTGGCTGAAAT
CGTTGGCCGTCAAgGCTGCAAAATCAAAGCTCTTCGCGCCAAAACCAACA
CATACATCAAAACACCAGTTCGTGGAGAAGAACCTGTCTTTGTCGTCACA
GGTCGTAAGGAGGATGTCGGTATGGCTAAACGAGAGATCCTGCAAGCAGC
TGAACACTTCAGTCAAATCCGTGCTTCAAGACGAAACAGTTCTTCATTAT
CACCACTTGGTTCCCCTGCACCAACAGCTCCTGGCCACATCACGAAACAA
GTTCGAGTTCCTTACAGAGTTGTTGGTCTCGTTGTTGGACCTAAAGGCTC
TACCATCAAACGCATCCAACAAGCTACCAACACTTATATTGTGACACCTT
CACGTGATAAGGAGCCCATCTTTGAAGTCACAGGTCTTCCTGATAATGTT
GATCGAGCCAAACGTGAAGTTGAACAACACATTGCTCTCCGAACAGGTGG
CATCTTTGATCCAACTCATCCAGAGCTGACTGATCAACTCTTGAACGGAT
TTGGCAACTCCAGCTTGTTCTCACCAACCGGCTCCTCCAGCGGTGGTAGC
TTCTCATCCCTCCTGGATAATCACTCGACCAATCCACTCTGTCAACGCTC
ACATTCGGTGGATTCGTTCAGTTACCTTAGTGGACAATCTAATGCTTCAT
CTAAATTCTCAGATCTCAGCTCAGCTGGAACCAGCCCATtcaacaataac
aacaacaacgCTTTCTTCTGTGACACTGTCATCCCATCACCAACAGCTGA
CATTGAAAATGGTATGGGACAATTCGACCCAGCTCCTGGTTCACCTGCAC
CAAGCTTATGGCCAGAAATGATGATTCCACGCTCAGCAGCCATTGGACGA
CTGGGTGGCCCTCAAATGCAACCGATGCCACCAACCAGATCTCTCAGTGT
CAGTACATTTACACCTGAGAATAGTGAGGTTCCTCAACTCCGACGTTTGT
TAAGCGAATCAGCTGCTGACCCATCTGCTGACTTACAGTCCACCTACTCT
CACTTTAACGGAACCACAGTCACCAGTACTGTTCAATCACCAATGATTCC
TGAAGCTTCAATCATTGATATGACCAAGGTCAACACCAGTGACGGAGAAT
CACAATCTTCAAGCCCCGATTGGATGGCCAACAAGCAGAATGGTTTACCA
ACCCAACAACCAGTACCTGGCAAGAATCAATGCTTCATTTGTAATACTGG
TAAAGTTGTGGCAGCTCTGGTACCTTGTGGTCATAACTTGTTCTGTCTAC
CATGTGCTGAGCAGATGAAAGAGAACGAAGGAGATTGTCCAGTTTgccaa
aagaaagttgaagcCTTCCTAAGAATCATCTCTTAAATGCTACACGCTGA
AGAGTACTACGCACCCACCGATGTCGGACTAAAGAAAGGCGAAGCCATGT
ATCAAATGGCTAACACAAACATTTTGCAGGAAAACATGGGGCAACCTTTA
AACGACAAAGTTGGTAACACAACATTATTAAACGAAATGGGTGAATTTAA
ACCTATGAATGGACAAAATGGATCAAGTAATATGGACGAACAAAGAGCTC
TTCAACTTGCTTTTGAACTTTCTATGTTGGGTTTGACAAGTGAGGAAGAG
ATGAGTTATAATGAGTTACGCATGAAAAAATCGATGAACATGACGGAATG
TGTTCCAGTCCCTAGTTCGGAGCATGTGGCTGAAATCGTTGGCCGTCAAg
GCTGCAAAATCAAAGCTCTTCGCGCCAAAACCAACACATACATCAAAACA
CCAGTTCGTGGAGAAGAACCTGTCTTTGTCGTCACAGGTCGTAAGGAGGA
TGTCGGTATGGCTAAACGAGAGATCCTGCAAGCAGCTGAACACTTCAGTC
AAATCCGTGCTTCAAGACGAAACAGTTCTTCATTATCACCACTTGGTTCC
CCTGCACCAACAGCTCCTGGCCACATCACGAAACAAGTTCGAGTTCCTTA
CAGAGTTGTTGGTCTCGTTGTTGGACCTAAAGGCTCTACCATCAAACGCA
TCCAACAAGCTACCAACACTTATATTGTGACACCTTCACGTGATAAGGAG
CCCATCTTTGAAGTCACAGGTCTTCCTGATAATGTTGATCGAGCCAAACG
TGAAGTTGAACAACACATTGCTCTCCGAACAGGTGGCATCTTTGATCCAA
CTCATCCAGAGCTGACTGATCAACTCTTGAACGGATTTGGCAACTCCAGC
TTGTTCTCACCAACCGGCTCCTCCAGCGGTGGTAGCTTCTCATCCCTCCT
GGATAATCACTCGACCAATCCACTCTGTCAACGCTCACATTCGGTGGATT
CGTTCAGTTACCTTAGTGGACAATCTAATGCTTCATCTAAATTCTCAGAT
CTCAGCTCAGCTGGAACCAGCCCATtcaacaataacaacaacaacgCTTT
CTTCTGTGACACTGTCATCCCATCACCAACAGCTGACATTGAAAATGGTA
TGGGACAATTCGACCCAGCTCCTGGTTCACCTGCACCAAGCTTATGGCCA
GAAATGATGATTCCACGCTCAGCAGCCATTGGACGACTGGGTGGCCCTCA
AATGCAACCGATGCCACCAACCAGATCTCTCAGTGTCAGTACATTTACAC
CTGAGAATAGTGAGGTTCCTCAACTCCGACGTTTGTTAAGCGAATCAGCT
GCTGACCCATCTGCTGACTTACAGTCCACCTACTCTCACTTTAACGGAAC
CACAGTCACCAGTACTGTTCAATCACCAATGATTCCTGAAGCTTCAATCA
TTGATATGACCAAGGTCAACACCAGTGACGGAGAATCACAATCTTCAAGC
CCCGATTGGATGGCCAACAAGCAGAATGGTTTACCAACCCAACAACCAGT
ACCTGGCAAGAATCAATGCTTCATTTGTAATACTGGTAAAGTTGTGGCAG
CTCTGGTACCTTGTGGTCATAACTTGTTCTGTCTACCATGTGCTGAGCAG
ATGAAAGAGAACGAAGGAGATTGTCCAGTTTgccaaaagaaagttgaagc
CTTCCTAAGAATCATCTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003755-exon-sc0000031-1491911889:699143..700167 | TCONS_00003755-exon-sc0000031-1491911889:699143..700167 | Clytia hemisphaerica | exon |
| TCONS_00003755-exon-sc0000031-1510915933:699143..700167 | TCONS_00003755-exon-sc0000031-1510915933:699143..700167 | Clytia hemisphaerica | exon |
| TCONS_00003755-exon-sc0000031-1575043694:699143..700167 | TCONS_00003755-exon-sc0000031-1575043694:699143..700167 | Clytia hemisphaerica | exon |
| TCONS_00003755-exon-sc0000031-1491911889:703467..705847 | TCONS_00003755-exon-sc0000031-1491911889:703467..705847 | Clytia hemisphaerica | exon |
| TCONS_00003755-exon-sc0000031-1510915933:703467..705847 | TCONS_00003755-exon-sc0000031-1510915933:703467..705847 | Clytia hemisphaerica | exon |
| TCONS_00003755-exon-sc0000031-1575043694:703467..705847 | TCONS_00003755-exon-sc0000031-1575043694:703467..705847 | Clytia hemisphaerica | exon |
| TCONS_00003755-exon-sc0000031-1491911889:707686..709442 | TCONS_00003755-exon-sc0000031-1491911889:707686..709442 | Clytia hemisphaerica | exon |
| TCONS_00003755-exon-sc0000031-1510915933:707686..709442 | TCONS_00003755-exon-sc0000031-1510915933:707686..709442 | Clytia hemisphaerica | exon |
| TCONS_00003755-exon-sc0000031-1575043694:707686..709442 | TCONS_00003755-exon-sc0000031-1575043694:707686..709442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:699143..709442 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003723 |
RNA binding |
Blast
BLAST of TCONS_00003755 vs. Swiss-Prot (Human)
Match: MEX3B (RNA-binding protein MEX3B OS=Homo sapiens GN=MEX3B PE=1 SV=1) HSP 1 Score: 269.626 bits (688), Expect = 6.715e-77 Identity = 160/216 (74.07%), Postives = 181/216 (83.80%), Query Frame = 2
Query: 857 MDEQRALQLAFE-LSMLGLTSEEEMS-YNELRMKKSMNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVGMAKREILQAAEHFSQIRASRRNXXXXXXXXXXXXXXXXHITKQXXXXXXXXXXXXXXKGSTIKRIQQATNTYIVTPSRDKEPIFEVTGLPDNVDRAKREVEQHIALRTGGIFDPTHPELTDQ 1498
+D+QRALQLA + LS+LGL S+E S Y+ KKS+NMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDV MA+REI+ AAEHFS IRASR +++L+ P PG T QVRVPYRVVGLVVGPKG+TIKRIQQ T+TYIVTPSRDKEP+FEVTG+P+NVDRA+ E+E HIALRTGGI ELTD+
Sbjct: 28 LDDQRALQLALDQLSLLGLDSDEGASLYDSEPRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNKNTALNGAVPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEIEAHIALRTGGII-----ELTDE 238
The following BLAST results are available for this feature:
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