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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003837 ID=TCONS_00003837|Name=TCONS_00003837|organism=Clytia hemisphaerica|type=transcript|length=1382bp
aatgtttatTTCGATCAACTGTACCTAAGCAAATAATCAATAGAATAAAA
TggataaaatacaaaaattgaaaattgtaatTTTCTCTAGGAAAGAGAAG
ACGAAAATACACCGATTTGTTCTAGacacaaagaaaataaacataGAACT
GAAGATGCGTATGTTTTTGTCCAACAAAACTAACCGTCGTCTGTTCCATA
ACAAAAACATGCATGTATTTTAGATATCAAATAATTTCGGCCCTTTCTAT
ACGGGATTTCACGTATTAAGTTAATAGCAATGAGAGATACTGAACCAATC
AGTAGTACCATTCCAATCACCACCAACAGTGTTGGGTATACGCGAGTCAT
TACAATGTCATAAAGATAGGCCCAAATAAATTCAGTGTTTCTTAATACCA
TAACAAGCCCAatatttaagcattttaaactgaCAACTTCTGTGATCAAG
GCAAAGAATAATATAAGACCACCAGTTAAAACGTAATATGTGAATCGCAC
AGGAACTTTCGTTAGCTCGAAATCCATTCCCGGGACAAATGAAGCTAATG
GGAGAATAATCACACCAACCAGGGTAGTGTAAAAGAtggattttctcagg
ctaacgGTACCAGAGACACGGCGTAGATTAACGTAGTAGAAACTGAAGGC
CAACAAAGCAAGGTAGCCGTAAATAAGTCCCATAACGTATTCATGCGGAT
ACGCTCGATGCTCCGTAAGTCGGTCCCATACTACTATTATAATTCCAGTG
TACGAGACAAGTCCGAGTAAACTTTCAGAAAGCGCCATTTTCTCGGACAG
CATGTAACGAGCGATTGTTATAGCAAATGTTGGCTGTGATGCTAAGATAA
CTGCATGAGTTCCAAGCTCAATACGTGCAAGAGACATATTCAGTAAAATT
ACACCAATAAGTCGAAACAATCCAGCTACAACCAAAAAAGCTGTGTTTTT
AAGTGAATCAAAAGGTGACAGACGCTCAGCTGCCATATTTGATGATATAA
TGACAAAACTGATGACGTAACGTATTAGCAGTGTTTCTATAGCATGCACT
GAACTATGGTTATAAGTATATTTGTAAAACATGTccccaacttgaaataa
aagGGCTTAGCCAAGTGAGCAACATATACCTAACACCAACTTTGCTTTCT
CCATATTGGTTTCGTCTTGTATACTTTTGTAATTTtgtcttgaaatttta
ttgataacaatgccttGAAATAACTCATAAAATAAAAGGTTTTTAATTAA
CCAGAAAAGGTTTTTGAACGTTTTTCTACGGAAGCCCGTTAGTGCCATTT
AGATtctagtttaatttttcaatgatGAAACTAAGAAAATGACAACGAAA
CCAAGAAATTGACGacgaaactgaaaataaat Run BLAST on NCBI protein sequence of TCONS_00003837-protein >TCONS_00003837-protein ID=TCONS_00003837-protein|Name=TCONS_00003837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MFYKYTYNHSSVHAIETLLIRYVISFVIISSNMAAERLSPFDSLKNTAFL
VVAGLFRLIGVILLNMSLARIELGTHAVILASQPTFAITIARYMLSEKMA
LSESLLGLVSYTGIIIVVWDRLTEHRAYPHEYVMGLIYGYLALLAFSFYY
VNLRRVSGTVSLRKSIFYTTLVGVIILPLASFVPGMDFELTKVPVRFTYY
VLTGGLILFFALITEVVSLKCLNIGLVMVLRNTEFIWAYLYDIVMTRVYP
TLLVVIGMVLLIGSVSLIAINLIREIPYRKGRNYLISKIHACFCYGTDDG Run BLAST on NCBI transcript from alignment at sc0000031:245155..246536 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003837 ID=TCONS_00003837|Name=TCONS_00003837|organism=Clytia hemisphaerica|type=transcript|length=1382bp|location=Sequence derived from alignment at sc0000031:245155..246536 (Clytia hemisphaerica)
atttattttcagtttcgtCGTCAATTTCTTGGTTTCGTTGTCATTTTCTT
AGTTTCatcattgaaaaattaaactagaATCTAAATGGCACTAACGGGCT
TCCGTAGAAAAACGTTCAAAAACCTTTTCTGGTTAATTAAAAACCTTTTA
TTTTATGAGTTATTTCaaggcattgttatcaataaaatttcaagacaAAA
TTACAAAAGTATACAAGACGAAACCAATATGGAGAAAGCAAAGTTGGTGT
TAGGTATATGTTGCTCACTTGGCTAAGCCcttttatttcaagttggggAC
ATGTTTTACAAATATACTTATAACCATAGTTCAGTGCATGCTATAGAAAC
ACTGCTAATACGTTACGTCATCAGTTTTGTCATTATATCATCAAATATGG
CAGCTGAGCGTCTGTCACCTTTTGATTCACTTAAAAACACAGCTTTTTTG
GTTGTAGCTGGATTGTTTCGACTTATTGGTGTAATTTTACTGAATATGTC
TCTTGCACGTATTGAGCTTGGAACTCATGCAGTTATCTTAGCATCACAGC
CAACATTTGCTATAACAATCGCTCGTTACATGCTGTCCGAGAAAATGGCG
CTTTCTGAAAGTTTACTCGGACTTGTCTCGTACACTGGAATTATAATAGT
AGTATGGGACCGACTTACGGAGCATCGAGCGTATCCGCATGAATACGTTA
TGGGACTTATTTACGGCTACCTTGCTTTGTTGGCCTTCAGTTTCTACTAC
GTTAATCTACGCCGTGTCTCTGGTACcgttagcctgagaaaatccaTCTT
TTACACTACCCTGGTTGGTGTGATTATTCTCCCATTAGCTTCATTTGTCC
CGGGAATGGATTTCGAGCTAACGAAAGTTCCTGTGCGATTCACATATTAC
GTTTTAACTGGTGGTCTTATATTATTCTTTGCCTTGATCACAGAAGTTGt
cagtttaaaatgcttaaatatTGGGCTTGTTATGGTATTAAGAAACACTG
AATTTATTTGGGCCTATCTTTATGACATTGTAATGACTCGCGTATACCCA
ACACTGTTGGTGGTGATTGGAATGGTACTACTGATTGGTTCAGTATCTCT
CATTGCTATTAACTTAATACGTGAAATCCCGTATAGAAAGGGCCGAAATT
ATTTGATATCTAAAATACATGCATGTTTTTGTTATGGAACAGACGACGGT
TAGTTTTGTTGGACAAAAACATACGCATCTTCAGTTCtatgtttattttc
tttgtgtCTAGAACAAATCGGTGTATTTTCGTCTTCTCTTTCCTAGAGAA
AattacaattttcaatttttgtattttatccATTTTATTCTATTGATTAT
TTGCTTAGGTACAGTTGATCGAAataaacatt Coding sequence (CDS) from alignment at sc0000031:245155..246536 >TCONS_00003837 ID=TCONS_00003837|Name=TCONS_00003837|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at sc0000031:245155..246536 (Clytia hemisphaerica)
ATGTTTTACAAATATACTTATAACCATAGTTCAGTGCATGCTATAGAAAC
ACTGCTAATACGTTACGTCATCAGTTTTGTCATTATATCATCAAATATGG
CAGCTGAGCGTCTGTCACCTTTTGATTCACTTAAAAACACAGCTTTTTTG
GTTGTAGCTGGATTGTTTCGACTTATTGGTGTAATTTTACTGAATATGTC
TCTTGCACGTATTGAGCTTGGAACTCATGCAGTTATCTTAGCATCACAGC
CAACATTTGCTATAACAATCGCTCGTTACATGCTGTCCGAGAAAATGGCG
CTTTCTGAAAGTTTACTCGGACTTGTCTCGTACACTGGAATTATAATAGT
AGTATGGGACCGACTTACGGAGCATCGAGCGTATCCGCATGAATACGTTA
TGGGACTTATTTACGGCTACCTTGCTTTGTTGGCCTTCAGTTTCTACTAC
GTTAATCTACGCCGTGTCTCTGGTACcgttagcctgagaaaatccaTCTT
TTACACTACCCTGGTTGGTGTGATTATTCTCCCATTAGCTTCATTTGTCC
CGGGAATGGATTTCGAGCTAACGAAAGTTCCTGTGCGATTCACATATTAC
GTTTTAACTGGTGGTCTTATATTATTCTTTGCCTTGATCACAGAAGTTGt
cagtttaaaatgcttaaatatTGGGCTTGTTATGGTATTAAGAAACACTG
AATTTATTTGGGCCTATCTTTATGACATTGTAATGACTCGCGTATACCCA
ACACTGTTGGTGGTGATTGGAATGGTACTACTGATTGGTTCAGTATCTCT
CATTGCTATTAACTTAATACGTGAAATCCCGTATAGAAAGGGCCGAAATT
ATTTGATATCTAAAATACATGCATGTTTTTGTTATGGAACAGACGACGGT
TAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003837-exon-sc0000031-1491911889:245155..246536 | TCONS_00003837-exon-sc0000031-1491911889:245155..246536 | Clytia hemisphaerica | exon |
| TCONS_00003837-exon-sc0000031-1510915933:245155..246536 | TCONS_00003837-exon-sc0000031-1510915933:245155..246536 | Clytia hemisphaerica | exon |
| TCONS_00003837-exon-sc0000031-1575043694:245155..246536 | TCONS_00003837-exon-sc0000031-1575043694:245155..246536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:245155..246536 . |
Blast
The following BLAST results are available for this feature:
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