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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003842 ID=TCONS_00003842|Name=TCONS_00003842|organism=Clytia hemisphaerica|type=transcript|length=2068bp
aaaaaaacaaaaaacatctaCAACGTGGCACAATGTCAACCAATAACAGC
TCAGAAGTGATTTTCCTTCTCAGCCCTGGAGAATTACAATTCTTTAATGT
ATCATTACCGATAATCTCAATTGTCGGATTATTTATCAACGTCGTCGTCA
TCTGGGTCATCGTGACGGATCGCGGAATGCGTCAAACGACGGCAAGTATT
TACATCGTTAATCTTGCCGTCGCCGACATTCTAGTACTAATCGTCGGTGT
ACCATTATGGATTTACCAGCTAGTCTCTAAGAACGCAGAAGACTGGTCGT
GCCAACTGACCTTTGGTTTATCATACGTCACTAGTGTAGTATCGGTCCTT
ACACTGGCTATAATCAGCTATGATCGATTCCATTGTGTTATGCAACCGTT
CAGTCAAGATAGTGGTAAACGGCTAGCCTATAAGGTAGTCTCTATCTCCT
GGCTAGTAGGTAGCTTCCTAGCTATCCCTTTCTTTGTTGGCTATAAAGCG
CAGCATCACGAGGTCACGTTCCAGATCTCAGCATTCTGTGTTTACACACG
GTTCTTCCGTCAAGAAGTTATGATAACTGACCTCATCATCATCGTCCTCC
TTATCATCATAAGCACCTATTTCTACTACAAACTATGCCGTGTAGCTAGA
GCCCAAGCAGCATTAATCAAGAAAGACTTAAACGTTATGAAGAGAGTCAA
TATGGATAAAATCAATACTCAAATTAAAGGACATAAAATCATGAAAGCTA
CGCGAACCTTAGGCTTCATTTTAGGAGCTATGGTTCTTTGTTGGATTCCT
TTCCTAATCATTTCCATCATCGATAGCTTTGATGTCAGATACTTCTCAGT
TTTCACACTCAAACTTTTAGGTACACTCACCTATTTGAACAGTATTTTTA
ACCCGATTATTTACACTTTCATGACCAGAGCTTTCAAGGAGAGTATTACC
AAACGTTTCTTCAGATTTAAGAGGAAATTGAGTCGAACAGCCATGCCGGA
TATCAAGAGGTGTACGAGTCACGTTTGAAGGACATGAACGTCATAACAAC
GTTCATCTGACATCCATTCAAGGTCCATTTGACGTCcctaacgttcatat
aacgttaaatgaacagTGAAATAACATTGTGTACCAGCTGGTCAGCAGTG
ATGATGAATAATACCAACAAGCTTTATTTAAACGTTCACAACGTTCACAA
CGTCACTAACGTTAATATAACGTTTTGTGAATGTTAAGACAAAATTGTGT
GCCGGCAGGGCAaagaatgaaaaacaaaatgcCCCATAAAAATTCACTAA
GCTAATGGATATTTATGGAGGGATTTTATTGGTAATAATAACTAATCGGA
GAAAACTTTGTCGCGGAAAAGTGACATAATTTGGCCAAGTGATGAATATT
TTCCCcagacaaaaattttccccagcaaAGTTTTCTCCGATAAGGTAATC
TATTCTTCTCTTAAATATTGTAAATAAATGAATGGAGTGCCTTTTCGGTT
CCGTTGATACTTTTATCTACTGACTTAGATTGTAATGTgtttcagtgaga
caggggtgtttatttaTTCTATTAAACTGATTAAAGTAGGTGGAGAAAAT
AGAGTAGAGTGTATCCGTAAAACAACTAAGATTTGTTACTCTTATACCAA
ATAAAGCCtcattaccgtaagttggtctaatgtcgaagGTCGAGAAGGGC
GACAAAATtggatgagggatgtcgacattagaccgaCTTACGGTAAGGCT
TCCTAAGTCAAAATTACTTCACAAGAAAAATTATATAgataaaaatttcc
taaaatatttGTCAAATGTTTTACTTTCTCCTGTAAGTTTAGCTATTTGG
cataaaaatttgcaaaatatgAAGTTTGAAACAATCGAGGAGACATCTCT
GGTGACTAATTTGGCAATCcagattttttctgtaaattttaaacatattt
attttacttagatattattattttttgtatattgtatattttattcattt
tctatttATCGATTTAAATCTGTATATTTTCAAGGTATTTTGGGTTCAGT
TCTATATATAAACAATCA Run BLAST on NCBI protein sequence of TCONS_00003842-protein >TCONS_00003842-protein ID=TCONS_00003842-protein|Name=TCONS_00003842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
KNKKHLQRGTMSTNNSSEVIFLLSPGELQFFNVSLPIISIVGLFINVVVI
WVIVTDRGMRQTTASIYIVNLAVADILVLIVGVPLWIYQLVSKNAEDWSC
QLTFGLSYVTSVVSVLTLAIISYDRFHCVMQPFSQDSGKRLAYKVVSISW
LVGSFLAIPFFVGYKAQHHEVTFQISAFCVYTRFFRQEVMITDLIIIVLL
IIISTYFYYKLCRVARAQAALIKKDLNVMKRVNMDKINTQIKGHKIMKAT
RTLGFILGAMVLCWIPFLIISIIDSFDVRYFSVFTLKLLGTLTYLNSIFN
PIIYTFMTRAFKESITKRFFRFKRKLSRTAMPDIKRCTSHV Run BLAST on NCBI transcript from alignment at sc0000031:487696..489763 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003842 ID=TCONS_00003842|Name=TCONS_00003842|organism=Clytia hemisphaerica|type=transcript|length=2068bp|location=Sequence derived from alignment at sc0000031:487696..489763 (Clytia hemisphaerica)
TGATTGTTTATATATAGAACTGAACCCAAAATACCTTGAAAATATACAGA
TTTAAATCGATaaatagaaaatgaataaaatatacaatatacaaaaaata
ataatatctaagtaaaataaatatgtttaaaatttacagaaaaaatctgG
ATTGCCAAATTAGTCACCAGAGATGTCTCCTCGATTGTTTCAAACTTcat
attttgcaaatttttatgCCAAATAGCTAAACTTACAGGAGAAAGTAAAA
CATTTGACaaatattttaggaaatttttatcTATATAATTTTTCTTGTGA
AGTAATTTTGACTTAGGAAGCCTTACCGTAAGtcggtctaatgtcgacat
ccctcatccaATTTTGTCGCCCTTCTCGACcttcgacattagaccaactt
acggtaatgaGGCTTTATTTGGTATAAGAGTAACAAATCTTAGTTGTTTT
ACGGATACACTCTACTCTATTTTCTCCACCTACTTTAATCAGTTTAATAG
AAtaaataaacacccctgtctcactgaaacACATTACAATCTAAGTCAGT
AGATAAAAGTATCAACGGAACCGAAAAGGCACTCCATTCATTTATTTACA
ATATTTAAGAGAAGAATAGATTACCTTATCGGAGAAAACTttgctgggga
aaatttttgtctgGGGAAAATATTCATCACTTGGCCAAATTATGTCACTT
TTCCGCGACAAAGTTTTCTCCGATTAGTTATTATTACCAATAAAATCCCT
CCATAAATATCCATTAGCTTAGTGAATTTTTATGGGgcattttgtttttc
attcttTGCCCTGCCGGCACACAATTTTGTCTTAACATTCACAAAACGTT
ATATTAACGTTAGTGACGTTGTGAACGTTGTGAACGTTTAAATAAAGCTT
GTTGGTATTATTCATCATCACTGCTGACCAGCTGGTACACAATGTTATTT
CActgttcatttaacgttatatgaacgttaggGACGTCAAATGGACCTTG
AATGGATGTCAGATGAACGTTGTTATGACGTTCATGTCCTTCAAACGTGA
CTCGTACACCTCTTGATATCCGGCATGGCTGTTCGACTCAATTTCCTCTT
AAATCTGAAGAAACGTTTGGTAATACTCTCCTTGAAAGCTCTGGTCATGA
AAGTGTAAATAATCGGGTTAAAAATACTGTTCAAATAGGTGAGTGTACCT
AAAAGTTTGAGTGTGAAAACTGAGAAGTATCTGACATCAAAGCTATCGAT
GATGGAAATGATTAGGAAAGGAATCCAACAAAGAACCATAGCTCCTAAAA
TGAAGCCTAAGGTTCGCGTAGCTTTCATGATTTTATGTCCTTTAATTTGA
GTATTGATTTTATCCATATTGACTCTCTTCATAACGTTTAAGTCTTTCTT
GATTAATGCTGCTTGGGCTCTAGCTACACGGCATAGTTTGTAGTAGAAAT
AGGTGCTTATGATGATAAGGAGGACGATGATGATGAGGTCAGTTATCATA
ACTTCTTGACGGAAGAACCGTGTGTAAACACAGAATGCTGAGATCTGGAA
CGTGACCTCGTGATGCTGCGCTTTATAGCCAACAAAGAAAGGGATAGCTA
GGAAGCTACCTACTAGCCAGGAGATAGAGACTACCTTATAGGCTAGCCGT
TTACCACTATCTTGACTGAACGGTTGCATAACACAATGGAATCGATCATA
GCTGATTATAGCCAGTGTAAGGACCGATACTACACTAGTGACGTATGATA
AACCAAAGGTCAGTTGGCACGACCAGTCTTCTGCGTTCTTAGAGACTAGC
TGGTAAATCCATAATGGTACACCGACGATTAGTACTAGAATGTCGGCGAC
GGCAAGATTAACGATGTAAATACTTGCCGTCGTTTGACGCATTCCGCGAT
CCGTCACGATGACCCAGATGACGACGACGTTGATAAATAATCCGACAATT
GAGATTATCGGTAATGATACATTAAAGAATTGTAATTCTCCAGGGCTGAG
AAGGAAAATCACTTCTGAGCTGTTATTGGTTGACATTGTGCCACGTTGta
gatgttttttgttttttt Coding sequence (CDS) from alignment at sc0000031:487696..489763 >TCONS_00003842 ID=TCONS_00003842|Name=TCONS_00003842|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000031:487696..489763 (Clytia hemisphaerica)
TCAAACGTGACTCGTACACCTCTTGATATCCGGCATGGCTGTTCGACTCA
ATTTCCTCTTAAATCTGAAGAAACGTTTGGTAATACTCTCCTTGAAAGCT
CTGGTCATGAAAGTGTAAATAATCGGGTTAAAAATACTGTTCAAATAGGT
GAGTGTACCTAAAAGTTTGAGTGTGAAAACTGAGAAGTATCTGACATCAA
AGCTATCGATGATGGAAATGATTAGGAAAGGAATCCAACAAAGAACCATA
GCTCCTAAAATGAAGCCTAAGGTTCGCGTAGCTTTCATGATTTTATGTCC
TTTAATTTGAGTATTGATTTTATCCATATTGACTCTCTTCATAACGTTTA
AGTCTTTCTTGATTAATGCTGCTTGGGCTCTAGCTACACGGCATAGTTTG
TAGTAGAAATAGGTGCTTATGATGATAAGGAGGACGATGATGATGAGGTC
AGTTATCATAACTTCTTGACGGAAGAACCGTGTGTAAACACAGAATGCTG
AGATCTGGAACGTGACCTCGTGATGCTGCGCTTTATAGCCAACAAAGAAA
GGGATAGCTAGGAAGCTACCTACTAGCCAGGAGATAGAGACTACCTTATA
GGCTAGCCGTTTACCACTATCTTGACTGAACGGTTGCATAACACAATGGA
ATCGATCATAGCTGATTATAGCCAGTGTAAGGACCGATACTACACTAGTG
ACGTATGATAAACCAAAGGTCAGTTGGCACGACCAGTCTTCTGCGTTCTT
AGAGACTAGCTGGTAAATCCATAATGGTACACCGACGATTAGTACTAGAA
TGTCGGCGACGGCAAGATTAACGATGTAAATACTTGCCGTCGTTTGACGC
ATTCCGCGATCCGTCACGATGACCCAGATGACGACGACGTTGATAAATAA
TCCGACAATTGAGATTATCGGTAATGATACATTAAAGAATTGTAATTCTC
CAGGGCTGAGAAGGAAAATCACTTCTGAGCTGTTATTGGTTGACATTGTG
CCACGTTGtagatgttttttgttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003842-exon-sc0000031-1491911889:487696..489763 | TCONS_00003842-exon-sc0000031-1491911889:487696..489763 | Clytia hemisphaerica | exon |
| TCONS_00003842-exon-sc0000031-1510915933:487696..489763 | TCONS_00003842-exon-sc0000031-1510915933:487696..489763 | Clytia hemisphaerica | exon |
| TCONS_00003842-exon-sc0000031-1575043694:487696..489763 | TCONS_00003842-exon-sc0000031-1575043694:487696..489763 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:487696..489763 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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