TCONS_00003845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003845
Unique NameTCONS_00003845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003845 ID=TCONS_00003845|Name=TCONS_00003845|organism=Clytia hemisphaerica|type=transcript|length=361bp
ttcttactttcaccattgtgtaagtatttttgtccatttttcttaagaaa
ttgggtgttaaAGCCTTCAAATGCTCTTGATATTTGTGCTATTGAAgctt
ctcataaaaaaacatgatGTTGATGTTGAAACTCAAGATCTCTTGATTTT
GGTCTGGATCACCCGAGTAGATCCCCGATCTCGGCACCGTAATCTTGTTg
caaatcaaaatggtagaggTAGAAGCGGTgaacgttttgttttttttaag
ttttatttattaCACTCTTGTACAGTTTATTGTTATCCAAAAAGTTATAA
ATTATAAATATGTAGCAGTAATGTATCATAAACTTATTTTGACTCCCCTT
TTTCTTATCTT
Run BLAST on NCBI

transcript from alignment at sc0000031:575061..575421

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003845 ID=TCONS_00003845|Name=TCONS_00003845|organism=Clytia hemisphaerica|type=transcript|length=361bp|location=Sequence derived from alignment at sc0000031:575061..575421 (Clytia hemisphaerica)
AAGATAAGAAAAAGGGGAGTCAAAATAAGTTTATGATACATTACTGCTAC
ATATTTATAATTTATAACTTTTTGGATAACAATAAACTGTACAAGAGTGt
aataaataaaacttaaaaaaaacaaaacgttcACCGCTTCTAcctctacc
attttgatttgcAACAAGATTACGGTGCCGAGATCGGGGATCTACTCGGG
TGATCCAGACCAAAATCAAGAGATCTTGAGTTTCAACATCAACatcatgt
ttttttatgagaagcTTCAATAGCACAAATATCAAGAGCATTTGAAGGCT
ttaacacccaatttcttaagaaaaatggacaaaaatacttacacaatggt
gaaagtaagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002154XLOC_002154Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003845-exon-sc0000031-1491911889:575061..575421TCONS_00003845-exon-sc0000031-1491911889:575061..575421Clytia hemisphaericaexon
TCONS_00003845-exon-sc0000031-1510915933:575061..575421TCONS_00003845-exon-sc0000031-1510915933:575061..575421Clytia hemisphaericaexon
TCONS_00003845-exon-sc0000031-1575043694:575061..575421TCONS_00003845-exon-sc0000031-1575043694:575061..575421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:575061..575421 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.258551	0	0.248729	0.30008	0.280932	0.786747	0.487257	0.472943	0.621789	4.9674	7.0932	0.397607	0.568925	5.0813	6.6449	12.4058	15.5781	5.19042	8.58578	4.81714	7.78574	6.76614	6.03862	1.60023	1.36625	0.518125	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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