TCONS_00003857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003857
Unique NameTCONS_00003857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003857 ID=TCONS_00003857|Name=TCONS_00003857|organism=Clytia hemisphaerica|type=transcript|length=462bp
TCTGaagattttagtgaaaaatttcCTAAATCAAGAGCTATATTTGCATT
CTTTGTACCTGGAAATAACATCTGAAACTTCTCCGGATTTGCTACGAGGG
AATTATCTTCAAACCAGGATAGAATAATATGCATGTCTATATTCAAAGCT
TCAATGACTTCCTCCAAGCAGGAAGCACATTTATGGAGAGTATTATCATC
GGCAAAGTTACAGAGGTCATCTTCATTTACATAGTAAAACAAATCATTTA
TAATTAAACATTAAACAGAATTGGACCCAAAATGGATCCCTGAGGCACTC
CAAATAGCAAAGGTAGCCAGTTACTGTAAGATGATCCCACCCTGACCCTG
TGTTTCCTTTTTGAAAGATAGCTATGTATGAAGGCGAGACTTCTACAATC
CAATCCATATGCATGAAGTTTGGCGATCAGAAGATCATGGGGTAAGCAAT
CAAAGGCCTTTG
Run BLAST on NCBI

transcript from alignment at sc0000031:896302..896763

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003857 ID=TCONS_00003857|Name=TCONS_00003857|organism=Clytia hemisphaerica|type=transcript|length=462bp|location=Sequence derived from alignment at sc0000031:896302..896763 (Clytia hemisphaerica)
CAAAGGCCTTTGATTGCTTACCCCATGATCTTCTGATCGCCAAACTTCAT
GCATATGGATTGGATTGTAGAAGTCTCGCCTTCATACATAGCTATCTTTC
AAAAAGGAAACACAGGGTCAGGGTGGGATCATCTTACAGTAACTGGCTAC
CTTTGCTATTTGGAGTGCCTCAGGGATCCATTTTGGGTCCAATTCTGTTT
AATGTTTAATTATAAATGATTTGTTTTACTATGTAAATGAAGATGACCTC
TGTAACTTTGCCGATGATAATACTCTCCATAAATGTGCTTCCTGCTTGGA
GGAAGTCATTGAAGCTTTGAATATAGACATGCATATTATTCTATCCTGGT
TTGAAGATAATTCCCTCGTAGCAAATCCGGAGAAGTTTCAGATGTTATTT
CCAGGTACAAAGAATGCAAATATAGCTCTTGATTTAGgaaatttttcact
aaaatcttCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002166XLOC_002166Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003857-exon-sc0000031-1491911889:896302..896763TCONS_00003857-exon-sc0000031-1491911889:896302..896763Clytia hemisphaericaexon
TCONS_00003857-exon-sc0000031-1510915933:896302..896763TCONS_00003857-exon-sc0000031-1510915933:896302..896763Clytia hemisphaericaexon
TCONS_00003857-exon-sc0000031-1575043694:896302..896763TCONS_00003857-exon-sc0000031-1575043694:896302..896763Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:896302..896763 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12183	1.36745	2.06406	1.39802	0.189106	0.747169	0.721142	0.506343	0.709006	0.14637	1.56277	0.466956	0.559568	1.54965	0.318505	0.598158	0.84215	0.539486	0	0.46796	0.949064	0.595183	0.160783	0.438525	0.451671	0.940579	1.73053	1.43645	0.155642	0.31715
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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