TCONS_00003971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003971
Unique NameTCONS_00003971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003971 ID=TCONS_00003971|Name=TCONS_00003971|organism=Clytia hemisphaerica|type=transcript|length=609bp
TTTAACCAATCGTTGCTGACGCTCAACAAACCGTCGCACACAGACTCAAG
CTGACGTTCACGTCATCCAATCAATTTCACACACCCATATATCAAATCAA
TGAGAAGGAGTGATCGTTTGAAGACAAAAGACCAAATCAATTATAAGACC
TTTTGTAAAGTCGTGAAAGAACAACCTCCTACATCAGAAGTAGCTATCCC
ACACGCAATGGCTGCTGAAATTGCATCGTTAGCCATCGATTACAAGATCG
TTCACGCTGAGCTTGCAGACTTCAAAGACGAGCATCAAGTTGATCCACCA
GCAAGCATCAAATCCCTGGATAAGGATTTCACATCATTAGAGAAATTAAG
GAACACCCTTCGAGATTTATTCATTCGTCTAGAAGAGTTGTCCCCGATCA
AAGAAGAATTCCGAAATGATTTTCTTCAAATGAAGCAAGGTGCCAAACTT
CTACTAGCTGAAATCATCAAGACATTGAAagtaaaaagagagaaagaaaC
GAATCAAGACACTCGTTTGGTCAAAGACATCAGCTCAAGCATAACCTCCC
TCAAATCATCACTGGAGAATGAACTCTCAGACAAACTTCCAGAGCTAAGT
GACGCAGAC
Run BLAST on NCBI

protein sequence of TCONS_00003971-protein

>TCONS_00003971-protein ID=TCONS_00003971-protein|Name=TCONS_00003971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MRRSDRLKTKDQINYKTFCKVVKEQPPTSEVAIPHAMAAEIASLAIDYKI
VHAELADFKDEHQVDPPASIKSLDKDFTSLEKLRNTLRDLFIRLEELSPI
KEEFRNDFLQMKQGAKLLLAEIIKTLKVKREKETNQDTRLVKDISSSITS
LKSSLENELSDKLPELSDAD
Run BLAST on NCBI

transcript from alignment at sc0000038:80736..81344

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003971 ID=TCONS_00003971|Name=TCONS_00003971|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at sc0000038:80736..81344 (Clytia hemisphaerica)
GTCTGCGTCACTTAGCTCTGGAAGTTTGTCTGAGAGTTCATTCTCCAGTG
ATGATTTGAGGGAGGTTATGCTTGAGCTGATGTCTTTGACCAAACGAGTG
TCTTGATTCGtttctttctctctttttactTTCAATGTCTTGATGATTTC
AGCTAGTAGAAGTTTGGCACCTTGCTTCATTTGAAGAAAATCATTTCGGA
ATTCTTCTTTGATCGGGGACAACTCTTCTAGACGAATGAATAAATCTCGA
AGGGTGTTCCTTAATTTCTCTAATGATGTGAAATCCTTATCCAGGGATTT
GATGCTTGCTGGTGGATCAACTTGATGCTCGTCTTTGAAGTCTGCAAGCT
CAGCGTGAACGATCTTGTAATCGATGGCTAACGATGCAATTTCAGCAGCC
ATTGCGTGTGGGATAGCTACTTCTGATGTAGGAGGTTGTTCTTTCACGAC
TTTACAAAAGGTCTTATAATTGATTTGGTCTTTTGTCTTCAAACGATCAC
TCCTTCTCATTGATTTGATATATGGGTGTGTGAAATTGATTGGATGACGT
GAACGTCAGCTTGAGTCTGTGTGCGACGGTTTGTTGAGCGTCAGCAACGA
TTGGTTAAA

Coding sequence (CDS) from alignment at sc0000038:80736..81344

>TCONS_00003971 ID=TCONS_00003971|Name=TCONS_00003971|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at sc0000038:80736..81344 (Clytia hemisphaerica)
GTCTGCGTCACTTAGCTCTGGAAGTTTGTCTGAGAGTTCATTCTCCAGTG
ATGATTTGAGGGAGGTTATGCTTGAGCTGATGTCTTTGACCAAACGAGTG
TCTTGATTCGtttctttctctctttttactTTCAATGTCTTGATGATTTC
AGCTAGTAGAAGTTTGGCACCTTGCTTCATTTGAAGAAAATCATTTCGGA
ATTCTTCTTTGATCGGGGACAACTCTTCTAGACGAATGAATAAATCTCGA
AGGGTGTTCCTTAATTTCTCTAATGATGTGAAATCCTTATCCAGGGATTT
GATGCTTGCTGGTGGATCAACTTGATGCTCGTCTTTGAAGTCTGCAAGCT
CAGCGTGAACGATCTTGTAATCGATGGCTAACGATGCAATTTCAGCAGCC
ATTGCGTGTGGGATAGCTACTTCTGATGTAGGAGGTTGTTCTTTCACGAC
TTTACAAAAGGTCTTATAATTGATTTGGTCTTTTGTCTTCAAACGATCAC
TCCTTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002220XLOC_002220Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003971-exon-sc0000038-1491911889:80736..81344TCONS_00003971-exon-sc0000038-1491911889:80736..81344Clytia hemisphaericaexon
TCONS_00003971-exon-sc0000038-1510915933:80736..81344TCONS_00003971-exon-sc0000038-1510915933:80736..81344Clytia hemisphaericaexon
TCONS_00003971-exon-sc0000038-1575043694:80736..81344TCONS_00003971-exon-sc0000038-1575043694:80736..81344Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003971-proteinTCONS_00003971-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:80736..81344 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.47137	1.49413	0.346014	0.196499	0.259604	0.427876	0.122376	0.670952	0.0891766	0.312438	0	0.610455	0.635452	0.418993	0.100727	0.108096	0.133165	0.0682449	0.16036	0.572448	0.0857547	0.250969	0.237727	0.277367	0.980869	1.09251	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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