TCONS_00004004 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004004
Unique Name	TCONS_00004004
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1472

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000039:75761..80704+

transcript sequence

>TCONS_00004004 ID=TCONS_00004004|Name=TCONS_00004004|organism=Clytia hemisphaerica|type=transcript|length=1472bp
AACAAGTGCGAAAAGTCAAGAAGAAACCTGCTCGTTGTTTATCTCCTGAA
ACTGTCAAGAAGATCAAAGATCAAATCGACTCTGAGCGCAAAGCATTGCT
GGAACAGAAGAACCTTGCAGAAGACGAGAAAAGTAAAGTGGAAAGAGAAT
TACAAAAGAGAGAGAAAGAACTAAATAAAACACAGGACGAACAAAAGAAA
TTGCAACAAAAACTGAAATCTGTTGAATCGAAGCTGATTGTTGGTGGTGT
CAACCTGCTTGAGAAAGATGCGGAACAACAACGACTTCTTGATGAGTCAG
CAAAAGAGTTGGAAGCTCGACATCAACGAGAAGCCGAGTTGAAGAAGAAA
CTCGAAGAACAGGAGGCTGAGAAGATTGACATCGAAGAGAAGTATGCGAA
TTTGAAAGAAGAGGCTGCTGGCAAAACTAAAAAGTTGAAGAAAGTGTGGA
CTATGCTGATGTCAGCGAAATCTGAGatgGCAGACATTCAAGAAGAACAC
CagcgtgaaaatgaagatcTTCTTGAAAGTGTACGATCTGCTTCTAAAGA
AGATAAATTCTTGCAACTTGTCATGGATAATTACATACCAAAAGAATATC
AGGAGATGATTCAACAGGGTATGATATGGAACGAAGAAACCGGCGAATGG
CAATtgCGTTATGTGGCGTACACTGGTAACAACATGAGAAAGTTACCGCA
AAGTCCTGAGAAAGATAAAGAAGTGGTGGATGCATTGGACCTATCAAGCG
TCTTTTTAACGTACAATCCTGGTATACCGCAAGACGGTGGAAGCGGCAAG
AAGTCTCGTCCCAAAACTGCACGTGCTAAATCTGCTAGGCCGAAGACAGC
TAAAAAGAAAGCTGGCAAATCATCAAGTAGCACAGACGTTCATGATGAAG
ACCTTTTCCCGATGTCCAAGAGATCTCAAACTCCCTTGAAGTTATTCTGA
ATGACGCTATGGAAAGTGATTACCGTAATTTGAGGTTCTCTGGGAAGGGA
AACATCTTTTGTGACAAAATATAATTACGCTACTATACCAAAACTCTAGA
GAACTGAGGGAACCTCTTGGCAACTCACTGGCAAAAAATATAATGCCCTC
GAGGCTCTAAGGAAGACTGAAAGGTGGAGAAATATTTATGAGGTTATTCG
TTAAAAGAAAAACGACAAATATTTAGGAGTCAATGTAAATAAAGTGCTAG
ATTCATTTTTACTAGGTAGTTTTTAACCTATTattgtttcgtttttttct
aaattgatctttgtttattttaattgtaaatttgaaaatattaaagattG
TAAAATTTACACACACTGATTGGatttttagactattttattCGTTGCTG
AAATATATTTTGTTTGTACTCGTACACTCGACGAAGAAACCAAGTTTCTA
AATTTCTGTGACTTGAATTGAAGATTTTGTGAGTGCTTACAGAAGCAAAA
CGATGAATGCACAACATTAAGC

Run BLAST on NCBI

transcript from alignment at sc0000039:75761..80704+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004004 ID=TCONS_00004004|Name=TCONS_00004004|organism=Clytia hemisphaerica|type=transcript|length=4944bp|location=Sequence derived from alignment at sc0000039:75761..80704+ (Clytia hemisphaerica)
AACAAGTGCGAAAAGTCAAGAAGAAACGTAAGTCATCTTTACATATTGTG
CCAATCATGAACCTTGAAGGGCAAACCTGTTTATTTTCGTGCTGATGGTT
AGTGCAGAATTAAAACTGTACCCTTACCGTGTGTTGCTCCAAAAATAACA
TCCTTACTAAACGGTTCATTcttctcaaaatttttacaattgTACCCAAC
GCGACCCCTTTTCGGATAGTTCTGGATTCCTTGGTATAGGAAACCTCTAC
CTTTACTGCACTGTATTTCTTTGTGCTACCTTGACTAATAAATTCCGATT
AGTCGGTTCTTTTTATCTGGCTTCTTCCCTTTCAGGCCAAAAAGTTTATG
TTCGCTTTATTAATCTAATTTGTTTATCCCATCCTTTTTTCTTGGGAGaa
ctaaaactttttttttggagtGGGGGTATTTAAGGCATGTCTTTTTTCTA
GagactaccttattacacgaatattgaGAGACGTGCAATTAACACGAATG
TAAAATTTTCATGTTAATAAAAACCACGTTTATTTTTGAAGGCTCGCTCT
AAAGTTTACACCTTCTCATTCGTGTTAATTCGATGTCGTGTTGATTTCAA
GGGCGTTGAATACTTCCATACttatattcatgtaataaggtagttGTCGA
TATTGATAGAGACCACCGATATAACTTCTTACTTACCGTGGATTAATgaa
tgattgattttttttctgtttcagCTGCTCGTTGTTTATCTCCTGAAACT
GTCAAGAAGATCAAAGATCAAATCGACTCTGAGCGCAAAGCATTGCTGGA
ACAGAAGAACCTTGCAGAAGACGAGAAAAGTAAAGTGGAAAGAGAATTAC
AAAAGAGAGAGAAAGAACTAAATAAAACACAGTGAGTCTTCCTTTTTATT
ACATTATTTATCGGACTCTTTTATCACTTTTGTAACCCGAATATTGCCAG
TATCCTACAATGTGAttgtatttgatatttttctatagGGACGAACAAAA
GAAATTGCAACAAAAACTGAAATCTGTTGAATCGAAGCTGATTGTTGGTG
GTGTCAACCTGGTAAGCTTCGAGAATCTCTTGACTATTTTTGTGTTACAG
TGATTGaatgtttatttgttttgattacAACGTCATGCAATCCTTTTGGG
ATACAAGTGAAAGATTTCCTAAAAAACTTTGACgtgtatttacatttttt
tagtctcacaactgtaaattttttcttttgtgtctATTAGCTTGAGAAAG
ATGCGGAACAACAACGACTTCTTGATGAGTCAGCAAAAGAGTTGGAAGCT
CGACATCAACGAGAAGCCGAGTTGAAGAAGAAACTCGAAGAACAGGAGGT
AATTGAACTATGCTATTATAGATTAGTGAAATGATTTCTTCTGTCTAAAA
ATTTCTGCTTTTCTGTGACAGTAGCCGCGTACCGTCGACTGTCCTAGCTC
ATGTTCTTCCTAATTGGGGAATTTCCTACGTTCGTTTACATAATTTATCG
ACATGGAATGGTATGAATTATAACAAGAGGTATTTCGTGATTGTAATCGC
AAATTTCGCGTATAGTAGATAACACTACACTACACGATTTGTTAATAGGA
ATTTTATACTTTCTTCTCCTCCAGGCTGAGAAGATTGACATCGAAGAGAA
GTATGCGAATTTGAAAGAAGAGGCTGCTGGCAAAACTAAAAAGTTGAAGA
AAGTGTGGACTATGCTGATGTCAGCGAAATCTGAGGTTTGAAATTTATAT
TGTAAATTTGTGAAATTATGTTCATACAACGTTTGTTACAAGTTATGCAT
GCCTTAAAGGTAAATATTTCGAGATCCAAATTCCAAATTCCAAATTCCAA
AttccttttaaaataaaaaaaaatgtagatgATGGGGGGTAAAGTAtact
attttattttcagatgGCAGACATTCAAGAAGAACACCagcgtgaaaatg
aagatcTTCTTGAAAGTGTACGATCTGCTTCTAAAGAAGATAAATTCTTG
CAACTTGTCATGGATAATTACATACCAAAAGAATATCAGGTACCCACCCA
ATACAACTCTCCTGCTCCGTCTCGTGGATAACATGAGTTTATGATTTGTC
ACAATTTAAGAAATCTTTCGACTGCCATTTTTAAGAATGACCCAAGTGTA
CCTCTCCCCTGTTCTTTTAAAGAAATGGAAGAAGCTTCTGTATTAGGGGA
ATAGCACCTAGTCtaattggacctaccccggtggggtggggtggaggtcc
tataaattaacctgtgttcgtccgtccgttcgtccgttcgtctgttacta
ACTTTTCtgaggattgaatcataggaatttttcgatttttggtacaaagg
tgcaaaataatagtggccaaaatgtgacggagcccgattttcgaaaaaaa
aaatttgggggcaaatgTAGGCCAAAAAGCagctaaaaacaggttttttg
gactttgtgaaaaattggttcattaattttttctgattttttgcatgaaa
gtagggtaacatcataggtaaaagatggctcaagcagatttttgcaaaaa
aattttgttgcctcaaaaaacgcatgtttatctataagaatcacttttaa
taagcatacatcaatgttcttagccatattattatttttattagtttttt
taagatgaaaatgtcacggtggaggtcaatggtttgagttttctagaaac
acttattattattttggctgaaaaacgaatctttatctgtaagaatcact
atttataagcatagatcaatgttcttagcaaaatcattattttattatta
ttttttctaaacaaagaaaatgtcactttagagcgcgatggtttgagttt
tctggaaacttTATTTATtgagctgtgcatttttctgatagtgggttgtt
tttataaagaaaagcgtttaatagcttttttatttctttttcgaaaatct
ttttcaatagtgttcaTAGTTTCTCTCATTAGATatgctttctttatttt
ttttgtattttgaccagttatcgtcttatgtgtttcattgtttcaatgtt
cactgattagtttgataaccaggtaggtccataaaagtatcacttgtttc
attatttttcacaaCGAATTTGTTATCATGTTTCTTTCAGGAGATGATTC
AACAGGGTATGATATGGAACGAAGAAACCGGCGAATGGCAATtggtaaaa
tttagttttttctatccccattgaaattCAACTTACCGTATGTCAATCAA
TGTTTATCTTTGGGGTCTTTCTATCAAAACCAGCATATCCCAGAGTTCAt
caaaacaaatagaaattcaaaatctAAAAGCACCCTAGCTTATAACGCGG
TGGCATAAGGTAGTGCCAAAGCACCAAACGGGGCACCAAATTTACTGATA
ATTTTATTGATACCGGTTAttaaaagatttgtaaaaagcACTTTTGATTT
TGTCTTTGGCAAATGAGTATTCTTTATTCTTTACTTcaatgtaaactttt
ttttatttctgtatTTTTGATACCCATTATTATCCCTTTTGTAGCGTTAT
GTGGCGTACACTGGTAACAACATGAGAAAGTTACCGCAAAGTCCTGAGAA
AGATAAAGAAGTGGTATGTTTTTCTTCACTCTTTGGTAGAAGCTAGATAA
TCATTTAGACAATCTTTCGATGGTTTTTATGAAATCTGTAGGCTGGCCAT
TActgtagaatttaatttttttgctgaatACTGCTAAAGCTGATAAAGGA
GGATAATGTGAAGTTCAATTAAATTCAGATTGGATGAGATGTAATATTTT
CTTGGACCATCTCTATGCAGCTTCCGCCAACATGGAAATGGTGCTGTGAt
ttattgactttttttatCGTAGGTGGATGCATTGGACCTATCAAGCGTCT
TTTTAACGTACAATCCTGGTATACCGCAAGACGGTGGAAGCGGCAAGAAG
TCTCGTCCCAAAACTGCACGTGCTAAATCTGCTAGGCCGAAGACAGCTAA
AAAGTTAGTGTTCGACAACCCTTTTTATTACATATTTTTATTCCTTCGCA
GCTTAACTTTTTGTGATATTTTCTCGTAAATGATGTCAAATACTgaaaag
ggttaaagtttcacCAGAACAACAACCATCAAAATCTTgcgaattttata
ttttataaatttcttttcttctaATACTTGATAATAAAGAACAAAAGGTA
GAAAAGGATTCATTTGGTTTTTCTTATAAACTATTGTGGAAAggggtcaa
atttttcaattgcgAAAGTTTCAAAGTAAAATTGATTCCTTCAGGAGGTA
AACAAcatcaatatttttgttttcccagGAAAGCTGGCAAATCATCAAGT
AGCACAGACGTTCATGATGAAGACCTTTTCCCGATGTCCAAGAGATCTCA
AACTCCCTTGAAGTTATTCTGAATGACGCTATGGAAAGTGATTACCGTAA
TTTGAGGTTCTCTGGGAAGGGAAACATCTTTTGTGACAAAATATAATTAC
GCTACTATACCAAAACTCTAGAGAACTGAGGGAACCTCTTGGCAACTCAC
TGGCAAAAAATATAATGCCCTCGAGGCTCTAAGGAAGACTGAAAGGTGGA
GAAATATTTATGAGGTTATTCGTTAAAAGAAAAACGACAAATATTTAGGA
GTCAATGTAAATAAAGTGCTAGATTCATTTTTACTAGGTAGTTTTTAACC
TATTattgtttcgtttttttctaaattgatctttgtttattttaattgta
aatttgaaaatattaaagattGTAAAATTTACACACACTGATTGGatttt
tagactattttattCGTTGCTGAAATATATTTTGTTTGTACTCGTACACT
CGACGAAGAAACCAAGTTTCTAAATTTCTGTGACTTGAATTGAAGATTTT
GTGAGTGCTTACAGAAGCAAAACGATGAATGCACAACATTAAGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002252	XLOC_002252	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000039	supercontig	sc0000039:75761..80704 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.988464	1.24015	10.8823	11.835	0	0	0	1.57954	3.52105	6.06471	5.15051	2.45521	1.50728	1.90278	2.48856	1.83828	2.38534	2.51981	1.27937	1.30543	1.09993	2.38099	2.899	2.16174	1.02759	0.498279	1.54269	1.19044	1.69158	1.80619

Blast

[Close]

BLAST of TCONS_00004004 vs. Swiss-Prot (Human)
Match: KIF3A (Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3A PE=1 SV=4)

HSP 1 Score: 216.468 bits (550), Expect = 9.754e-62
Identity = 146/279 (52.33%), Postives = 203/279 (72.76%), Query Frame = 3

Query:   39 LSPETVKKIKDQIDSERKALLEQKNLAEDEKSKVERELQKREKELNKTQDXXXXXXXXXXXXXXXXIVGGVNLLEKDAEQQRLLDESAKELEARHQRXXXXXXXXXXXXXXXXXXXXXYANLKEEAAGKTKKLKKVWTMLMSAKSEMADIQEEHQRENEDLLESVRSASKEDKFLQLVMDNYIPKEYQEMIQQGMIWNEETGEWQLRYVAYTGNNMRKLPQSPEKDKEVVDAL--DLSSVFLTYNP--------GIPQDGGSGKKSRPKTARAK-SARP 842
            +SP+ + +++ +ID ERKAL  + ++ E+E++K   EL+KREK+L K Q E + L +KL ++E K+IVGGV+LL K  EQ++LL+ES  ELE R +R  +L+++LEE+E E++DIEEKY +L+EEA GKTKKLKKVWTMLM+AKSEMAD+Q+EHQRE E LLE++R  S+E +   L++DN+IP++YQEMI+  + WNE+ GEWQL+ VAYTGNNMRK  Q+P  DK+  D    DLS V+L Y           + +   S  K+RPKT R K SA+P
Sbjct:  414 VSPDKMIEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPRDYQEMIENYVHWNEDIGEWQLKCVAYTGNNMRK--QTPVPDKKEKDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGKARPKTGRRKRSAKP 690

The following BLAST results are available for this feature:

BLAST of TCONS_00004004 vs. Swiss-Prot (Human)

BLAST of TCONS_00004004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KIF3A	9.754e-62	52.33	Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3...	[more]

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TCONS_00004004 (transcript) - C. hemisphaerica