TCONS_00004021 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004021
Unique Name	TCONS_00004021
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1381

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000039:292645..298972+

transcript sequence

>TCONS_00004021 ID=TCONS_00004021|Name=TCONS_00004021|organism=Clytia hemisphaerica|type=transcript|length=1381bp
GAAAAGAGCTATGAGTGTTGCAGAGATCGCGTACACTCAGATCGCGTACA
TGTTTTACTATggaattttttcatatttcaattaaaaagcctactcagtg
cgAAAGAAAAATCGTATACCTTTTAATAGGCCGTTCAttaattcaaatca
aatgacattggtggccgaattgctatgttccatgttttgtcagatagtcc
caagttagagcagttcaTGGTAAGGggacccgtccatattcatttgacaa
cgcataacgtcaaattgacgttatcctctgaaNACGTTTTCCactgtcaa
atgaatatggcaTGGACGGCTCCCCTAAATATTATAAGCTGAGGTATACC
TGGCTGACCATGCAACCCTTACCAGATCCTACTGTCAGCATACTTAGGAC
GAAACTTTTGGTGCATCAGTAGGGTGGTCTCAAACGTAGACATAAAATAT
GAGTAAAAAAATATACCCTCGTCATTCATGGACCAACCGCCACTAATAAA
TTCAAGCTGCTTATTGTTGACAAGTTTTTTAacaatgtcttttttttcat
cACTTTGCTGATCCCACCATCGTTTAAAAAACGCAATTTCGACATAAATG
AATGTTCTATTAGGATTCTTATGAAGCTCGTCGATAGTTGTGTCTAATAT
GTATTGCACTGAGCCTGCTTGAATTAATCTTTCAGCTCCATAAAAATACT
GATCCACAGTTTTCAACCAGCCAACGTCATCGTGAGTGTGCGGGACAATA
TGTATTTGAAGCTTCTTAGTCTTGTCATTGCAATCAAAACTTAAGATACT
TCtttgaaacataaaaatgagaaaaaatttgGAGAATACGAGCAATCGCA
TTCCGgacgccattttgtttgtttactaaaaatttttagatcatcgaaac
attacgtcatattCGAAAAAAATCATAGTGTAAGCAATACATTAAATTGA
AGTGTAGAAAGGGCTTtatgaaaattgatttatttaCGGCACCGATATTC
AGTACCTTCTCTCAAGTCCTTATCCAAGATGGTCAATATCCCAAAGACGA
GGAAGACCTTTTGCAAGGCAAAATGTTGCCGAAGACATACACTTCATAAG
GTCACTCAGTACAAGGCTGGAAAGGCATCATTATACGCCCAAGGTAAAAG
AAGATACGATCGAAAACAATCAGGATATGGAGGTCAAACCAAACCTGTTT
TCCACAAAAAGGCTAAGACCACCAAGAAAGTCGTCTTGAGAATGGAATGT
ACAACGTGCAAATACAGAAAGCAAGTTCCATTGAAGCGATGTAAACACTT
TGAATTAGGTGGTGACAAGAAGAGGAAGggacaaatgattcaattttaaa
TTGGAAATACACTTTACACAAGAAATTTTTC

Run BLAST on NCBI

transcript from alignment at sc0000039:292645..298972+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004021 ID=TCONS_00004021|Name=TCONS_00004021|organism=Clytia hemisphaerica|type=transcript|length=6328bp|location=Sequence derived from alignment at sc0000039:292645..298972+ (Clytia hemisphaerica)
GAAAAGAGCTATGAGTGTTGCAGAGATCGCGTACACTCAGATCGCGTACA
TGTTTTACTATggaattttttcatatttcaattaaaaagcctactcagtg
cgAAAGAAAAATCGTATACCTTTTAATAGGCCGTTCAttaattcaaatca
aatgacattggtggccgaattgctatgttccatgttttgtcagatagtcc
caagttagagcagttcaTGGTAAGGggacccgtccatattcatttgacaa
cgcataacgtcaaattgacgttatcctctgaaNACGTTTTCCactgtcaa
atgaatatggcaTGGACGGCTCCCCTAAATATTATAAGCTGAGGTATACC
TGGCTGACCATGCAACCCTTACCAGATCCTACTGTCAGCATACTTAGGAC
GAAACTTTTGGTGCATCAGTAGGGTGGTCTCAAACGTAGACATAAAATAT
GAGTAAAAAAATATACCCTCGTCATTCATGGACCAACCGCCACTAATAAA
TTCAAGCTGCTTATTGTTGACAAGTTTTTTAacaatgtcttttttttcat
cACTTTGCTGATCCCACCATCGTTTAAAAAACGCAATTTCGACATAAATG
AATGTTCTATTAGGATTCTTATGAAGCTCGTCGATAGTTGTGTCTAATAT
GTATTGCACTGAGCCTGCTTGAATTAATCTTTCAGCTCCATAAAAATACT
GATCCACAGTTTTCAACCAGCCAACGTCATCGTGAGTGTGCGGGACAATA
TGTATTTGAAGCTTCTTAGTCTTGTCATTGCAATCAAAACTTAAGATACT
TCtttgaaacataaaaatgagaaaaaatttgGAGAATACGAGCAATCGCA
TTCCGgacgccattttgtttgtttactaaaaatttttagatcatcgaaac
attacgtcatattCGAAAAAAATCATAGTGTAAGCAATACATTAAATTGA
AGTGTAGAAAGGGCTTtatgaaaattgatttatttaCGGCACCGATATTC
AGTACCTTCTCTCAAGTCCTTATCCAAGATGGTGGGTAATATTTATAATT
TTGGAATATTGGAAACCCTTCGCATATCTTAGTTTATCTTGTACATCTGG
TAATAAACGTTAATGGAATAGATTGTGTTTGCTTTTCACATCATTGGTGA
TCATGATTATGGTCTGATTTGGAATCTGAGAGTTTATCGTTTTTCTTAAT
TCAGGTCAATATCCCAAAGACGAGGAAGACCTTTTGCAAGGCAAAATGTT
GCCGAAGACATACACTTCATAAGGTCACTCAGTACAAGGCTGGAAAGGCA
TCATTATACGCCCAAGGTAATAAAAAACTGTCTGTCTGGCTAGATTGCAA
TTTGAAGAtatatgtttttcatttttttttacccattccagggtcaaatt
gaaactattttggtggcaatcaaacctaattcatcttgtagagcttcaaa
aaagaaaaaaaatgagggtcgtacacctcctaatgataagcggttccaga
gatattgagattttggttcctccaaaatagcacctttttagGCATTTGAA
gttgacaatttagcccagaaatggcCTATAAAAGGGCACTGAAATATAca
ctttttgatggttttccaatttcaaaatcCAATAATAAAAAcccagatat
cttcattttgactgcagacttttatcaaattctttttgtaatggcttgct
aTCACTTcgaggaagaaatgaaaagacatttttttgaaaaagaagacatt
gcattgcaaaaaaaatcaaaaacgttataaagcggaagttaaaattgctg
aacGTCTACCTATCTTTGCAAtcaaagcgctgcggaggaaaaattcacca
tggcatataaataactgttttaggctaaaaaggGTCTCTTTAATTCTAGT
CgtcattttcaggctgaaaatgttTGCCAAAGTACGAAAAGTAAAACata
ataactttaatgaaagaattaacttcagagagtagcaccattggatttct
caggtattttctgataaatatgaaaagtttcactttctgaacattttttc
ctctgCAGCTGTTTGAAATCATAGATGagttatgaatttttttgtgtccT
GCAGatctaatatttctaaaaatggccttagTTGGAACAAATATTTAgac
aaaagtgtagaatattacacctggatattatatatggttggaaagctaaa
agaaagctctaaattactcaaaagtAATTAATTTTATAGCTAAACTACAa
aaagaacaattgcttgttaaagttggacctaaaattgaagattttcatga
GCATCAAATAAGAAACAAGCAATCCCGGAATGGCTATCTGGAAAGTCTGG
AAATAGCATACCTGTCAGTCTGGAAATAGAGAAATATTTCTCTTTTATTC
GCTTTATCTATCcattcttgaaattttcagtgtgAACCCTTGTGAACACC
CTCATACTGGGAATAACCTGCACTGTGTCACTGTTAACTTTATTATCTTT
GTTAAAGACAACCTTAGAATTTTGGTTTTTGCACACTTTTTTACTTGTAT
ATACTTTgtcacttttaaaaaaagtctgGAAAATATTAGTGTTTTTTACC
TAAAGTCTGGAAAAATTTGGCTTTAAGCAAAAATATCTGgaaaaaattga
ggtttttgggcaaaagtctggaattttgaaagtttcctaCCCGTGGTAAC
CCTGTTTGTATAATTTGTACAacacatatttttcaacaaaagatttcCCA
TAACTCAcatagtgggcacccccccccctttaaaaaGGGGGGTTgagaat
tttactgaatttaaaagaattggggcttgtgaaaatttcaaataaaaggg
gtGGCTTGGGCAAAAAATTGGGGGGTTAATTTTTAAGGGGGGGCTTGGAA
GATTTGGCAATTTGCAAAAGAgtgttttccattcatttttaaaactctgt
acatcataaaaatcattaaagcaccgataacattttatacttttattttt
gaaactttagccATCCATTGGCCATTGTCTAAATTAGGAACGTGAAACTA
TTCAGAAATTCTTAGTTTTCTTCCACACAGCTACAGGCAAAATCGCAACA
AAAATGAGATGTATGTTATTGTTACCAAGCTAGCGTCTAGGTGCAAAGgt
cctgggggctaacaaaaattcataaatctttagggggacttaaaacttaa
ggggacctaaacccaggctgacgctttGTAAAGAGTCTTATTTCGTTGGG
caagcttagaatttcttttgatacagtttataaaagaaatcaaaagacat
tAACGACAATTGCTTGGGTCTATAAATTATTTGAAGTTACTGAATTTGGG
CCAAGTGCGTTTCCCATGTTCGACTATATAACAATAAGGGAGACACCATC
CTGCTATGAAACAGGAatacttatgtaaaaaaaacacaccctttaaatgc
attttatttcaaaaatgaataaaaatatccttATATAATGCTACACTTCA
ATAAACTTTCATTTCAGGTAAAAGAAGATACGATCGAAAACAATCAGGAT
ATGGAGGTCAAACCAAACCTGTTTTCCACAAAAAGGTAATCAAAATTGTC
ACTTGCGTAGGGTTCTGCTTTAACATTTTCTCTTTATATCTACTTGGCAT
TATACCTGGCCTTGTagaccacagatctgtaaagcctaAAGGGCTAGATA
AGCAACTTTTAGCTTTTTAGAAGCAAAAATTTGGCTTTCTAAATTTcatg
ccgatggataggatctagcattttatttgttttcggAGTGCGAGATCAAA
AAAGTAGGTGACAAATGTTATTttgcatctctcaaaccagtgaactTGCT
TGTTGTCgtgtgatttctttggtaggaaatcctaccaaaatttgcttcac
tttttgataaaggCCATTAGATGATGCTTCAGACTGGAATGAAAATgatt
tataataataataatgatagtAATGCTATACAAGctcgcaggccaccgtg
cgagcacatgggcctctatgaactgctctttgttcggtttacaattttct
taaggTAGAGTTTTTTTCCTAGGGCTCCCCCTGACTTTGAATTTGAGGTT
TGCGTCTTTTATTGAAGTATTCATTTCTTGGGCTTTGATACACCACTCTT
TGATTGTCTTCCTTTCATTTTTCGTAAGATCTTCTGTCACCCGGAAGGGT
AATTCTCCTTTGGTGATTGCCTTTaacactgtatttTTGTCTTCTTTGTT
TGCAAATCAGACTTTTATTGGTTGATAGCGTTTCTCATCTTCTCtttcct
tcgaaaattttccgattctttgaatttcttcaatttttatattCCTTAAG
TGTAGCATCATAggtaaaaaattttcatgaagatATTCTTTGTCGTAGAT
TTTCGTTGACTCCTNCTTCAATTTTTATATTCTTTAAGTGTAGCATCATA
ggtaaaaaattttcatgaagatATTCTTTGTCGTAGATTTTCGTTGACTC
CTCTGAATCTTCAGTGGATTCCTCAACACCATGAAGAATTAGATTGCATG
CCGTGGATTGAATCTGTCGTTCCTCCTGTTTTTCTCTTCAAAATGCATTT
TCTATGTTCTTCTCAATTTGCCTCGGCGCGACTGCTGCGTAGCTTCGTGA
TTTCTACGTCATGGGCTTTCATTATGTTCTCACAAGCTTTTATCTCCTTT
CGGAATCCTGAAACTGTTGATGTTTCACATGAATTGACCCGTTCCAACAA
AATGCTCATAGTaacatgaaattttcaattgggaatatctttccaaaact
gtTACCACAAGAGCTAAAAGTAACAAACattagacttgagtgtctttGGT
GTCACTGtagtatgaaaatcttttgaaggcacgtggtggcaaggtggttt
ttttgtggttgaaatttgaaaatttccggtgtgaacattcaatttcttat
ataCAACacatcttttgcatctttctcacaacttgaaacgtcataacaac
ATATAGTTGGCAATTAAatagaatctgactctcacaggaacaTTTTTAAC
CACTTTTGGGAAtcggatgagtgattttcgataaaaacgcatttaaaatg
ttaaaaaaatcatttaatcagagaaggagagtgaacaataatatcaatAA
TGCGGGCATAGCTAGAACCaggagaaatcagcaaaaatcaggtacttgta
tatccagtgtataatgaATCCTTGATTTGATGGTTGGTCTGACTTGTGCC
GTGATCATTGTCtctatattttttcaaaactatttgaCACTCATAGTGTC
AGTCttggtttaggtcccaggcaaaaattaggtccccctgaATTTTCAGC
TTCATCTGctttaatttgagtaattgaagccaaccatAAAGATtaagtac
tcttaggtgccaaataaacggggggacctaattactggggggttggaaaa
tggacctttaaaaaccctaaaaaggttcaaaatagactaaatttaggctt
tttagaatAATACAGGGAACTTTCCTTTTGGTagctagaaattttcaaaa
aaattaataaacgagggtcttaataaggtccgggggttgggaaaaaatcg
aaaaattaacaagcggggggggcctgtttatttggcacctaagagtattc
agtttccccccccccccctcgacTAGCAGGGAATTGACGCTATGACACTT
CAAAGACTATTCAAAGATTTCTTAACTATActtaaattttttcagaaaag
ctAAGTTACTTGATCAATTCTTTTATAGGCTAAGACCACCAAGAAAGTCG
TCTTGAGAATGGAATGTACAACGTGCAAATACAGAAAGCAAGTTCCATTG
AAGCGATGTAAACACTTTGAATTAGGTGGTGACAAGAAGAGGAAGGTAAG
TGAAGTCTTCTCTACTTTTCTCCTTATTTTACTTGTTGGTTCGTCAAAAG
TTAAAGAAACAAGGTTTCCAGACTGACTTTAACACAGATTATTTCAATTT
AGCCAAATGTGTTTAGGCATCCACCATTAGAGAAACGTCATGTTGCTATT
TTTATCCATCTTAAACAGCTCCTGTTGATCGTTATAAGGAGTGCACAAAA
ATATGATCAGACAAAGATTGAGCTACTTGCAGAGCAACTAGAGCCATAGA
AACTCAAAAACTTTGATAGCTTCTTTTTTGCTTTtcaaattgacaatttt
ttgtcGAACCATATTTTTTTCGGGCAAAATAATATTCGTTGGTTGctcat
tttcttctttgatcttttttttcagggacaaatgattcaattttaaaTTG
GAAATACACTTTACACAAGAAATTTTTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002259	XLOC_002259	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000039	supercontig	sc0000039:292645..298972 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
580.164	534.284	674.248	743.989	534.335	436.634	548.066	575.28	818.547	636.281	799.157	1012.34	1031.52	1065.96	967.177	929.914	1046.87	1063.27	540.11	587.337	1118.89	1011.8	941.154	875.33	836.377	850.786	860.027	885.64	675.928	679.693

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR027291	Glyco_hydro_38/57_N
IPR000602	Glyco_hydro_38_N
IPR011330	Glyco_hydro/deAcase_b/a-brl

Vocabulary: **Molecular Function**
Term	Definition
GO:0004559	alpha-mannosidase activity
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006013	mannose metabolic process
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006013	mannose metabolic process
molecular_function	GO:0004559	alpha-mannosidase activity
molecular_function	GO:0003824	catalytic activity

Blast

[Close]

BLAST of TCONS_00004021 vs. Swiss-Prot (Human)
Match: RL36A (60S ribosomal protein L36a OS=Homo sapiens GN=RPL36A PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.406e-46
Identity = 80/108 (74.07%), Postives = 92/108 (85.19%), Query Frame = 3

Query: 1029 MVNIPKTRKTFCKAKCCRRHTLHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRMECT--TCKYRKQVPLKRCKHFELGGDKKRKGQMIQF 1346
            MVN+PKTR+TFCK   C +H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKP+F KKAKTTKK+VLR+EC    C+ ++ + +KRCKHFELGGDKKRKGQ+IQF
Sbjct:    1 MVNVPKTRRTFCKK--CGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

The following BLAST results are available for this feature:

BLAST of TCONS_00004021 vs. Swiss-Prot (Human)

BLAST of TCONS_00004021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RL36A	2.406e-46	74.07	60S ribosomal protein L36a OS=Homo sapiens GN=RPL3...	[more]

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TCONS_00004021 (transcript) - C. hemisphaerica