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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004118 ID=TCONS_00004118|Name=TCONS_00004118|organism=Clytia hemisphaerica|type=transcript|length=2273bp
AACACTGACCTTTAGTACTTTAGATATACCAATGACAAATGCTTTCTTTG
TAAACCAATTATTTGGCAAATTGAACTTAAAGATGACGTTGTATCAAAgt
gtttttacttttatttcagaaaagaaaaataactcaaaGAAATGGAGATT
TCAACCACATCAGTTTCTTCGCCTGGTGAGTCTGAAAGAATCCCCTTGCT
GATCAGTCAGCAACAACGCCAACAAACTGATGAACCAGATGCTCGTAGAT
GGCTAATGATGGTCATTTGTGCTTTGAATGCTTCTGTTTCTGGATTGTTG
CTTGGTGGTATGGTGTCAATAAAAGTAATTGCTATTCATCATTATGGCAT
CACCTTAGAAGCAACTCACTGGACTGCCTACATTTTTCTGCTGACAAGTG
CATGTTTCAGCATTCCCATCTCCTGGCTCATTACAAAATATGGCATTCGA
AAATTGTTGATAGTAATTTCTTTACTGCACACCATAACAACCATTTTTCA
TGTGTTCTCATACCAGAATGATCGTTATTTGGTTTTCATGTTTGGGCAGA
TTCCTGCAGGTTTAGCTTATTCGATATTACTTCCACTGTTGACAAAGCTT
TCACTAGACTGGTTTCCATTGCGTGAACGAGCCTCCAGtacttctttctt
tttcttttcctgtaTCTTTGGATTTGCAGTTTCCATCGCACTTGGGACCT
GTTTGGTTAAAGACTATCATGATGCTGAAAATGAAATCAGAAACTTAGTT
ATTGGTCGTTTAGTGTTTGCAATAGTTGCTATGGTTACAACACTTTTCGG
TTACCGTGAACGTAATGTTTATTACAGCAGAACAATGAATAATGATCCAC
TAGCATTATACACTTCGTTGAAAAAGCTTGTTATGAACCGTGATTTTCTA
CTCATGAGTCAATCTTATGGCATATATTTTGGACTTGCTATCACACTTTT
GTTTCAAGTTAATCCACTGTTAATGGAGAAATTTCCGAAAGAACATGGCA
CCTTAATCGGATGGGTTGGTTTCGCTCTTATAATGATCTCATACCTATCA
ACTTTAATTTTTGGCGTATGGTTGGGACGATTTTCGTCTTACCGTAGTAT
GGCAATCATGCTGAATGTGTTATCTTTGGCAGTTTGGTTATTATTCACAT
TACTTTTCATTGAAACTGCatcttttttccttttatttgttGTCTATCTT
GGGATCGGTTTGGTGGCATTACCTTATATTTACCTTGGACCTGAACATGC
AGCTGAACTAACATACCCTATTGATGAATCACTCTCCACCGGATTCATCG
TGGCTTTCGGAAACTTGTATTCGTTCGTTTTCTTGTTGTCCTTTGGTGCA
ATGACTAGTAAAGGATATTTTAAAAGTGCTTGTCTAGGTATTTTTTCTgt
ttatattttatcaacagcTTTTGCTGTCGCTTCTCGCTCATATTTGAGAA
GAAGGAATGTTGTATCAGGACAAGTTACTGAAAATACAGTCACTTATTCT
CAATAAACATGATTTTTATTCGACGATTGATACTATTTATATATCgtata
tttttattgttttttaagTAAATAACAATACAACatttttcatcatcatt
ttcatcttatgtttttcttccaaaattttAACGGACTTTATTCAGTACAC
TTTCATCCTTTCAGACGTGTTTTAATCCATTGCGGCCTTTTCAAATCGTC
AATATATCAGTCATTTTAGGGTCAGTTTTGCCTTTACCGTCAGACTTTTG
CTCATGAAATTTCGTGGGGGCCCCTCCAAAAAGGTCTCAAGATCTTTTCT
ACTTTCGAACTAGAGCAACATGTATGGATATGTCACACGAAAGATGGTAC
GGACCGTGAGATTACCCCCAAATATAAAAGTGGCTAAACTGAAATTTTAC
CAGTCATTCTCGTTTATCTATTattacaaaaaatcaggaaattgaAGAAC
TATACCCATTCATCTTAGTCTACGTGTAGAGATTCGGGCAGATCCGGGGC
TACagtaatttacaattttttatactCTTATATTTTTAATTACTTAATTT
ATATTTATTACTTAATTTTATACATTATATACTCATTAAAATACTTTAGG
TTTTTATATACATTTCATAGAAGATAGAATTTAAACGTGATCACtgataa
aaagattttcaattttatttccagATTCCAAGAAGGTCCTTTTTAAGTGA
CAATATGTTTTCGAAATCTTGtacaaaaatcaataaatcgAAACCCAGCA
TATTGGGGGAGATTTTTTCGTAC Run BLAST on NCBI transcript from alignment at sc0000039:375575..377847- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004118 ID=TCONS_00004118|Name=TCONS_00004118|organism=Clytia hemisphaerica|type=transcript|length=2273bp|location=Sequence derived from alignment at sc0000039:375575..377847- (Clytia hemisphaerica)
AACACTGACCTTTAGTACTTTAGATATACCAATGACAAATGCTTTCTTTG
TAAACCAATTATTTGGCAAATTGAACTTAAAGATGACGTTGTATCAAAGT
GTTTTTACTTTTATTTCAGAAAAGAAAAATAACTCAAAGAAATGGAGATT
TCAACCACATCAGTTTCTTCGCCTGGTGAGTCTGAAAGAATCCCCTTGCT
GATCAGTCAGCAACAACGCCAACAAACTGATGAACCAGATGCTCGTAGAT
GGCTAATGATGGTCATTTGTGCTTTGAATGCTTCTGTTTCTGGATTGTTG
CTTGGTGGTATGGTGTCAATAAAAGTAATTGCTATTCATCATTATGGCAT
CACCTTAGAAGCAACTCACTGGACTGCCTACATTTTTCTGCTGACAAGTG
CATGTTTCAGCATTCCCATCTCCTGGCTCATTACAAAATATGGCATTCGA
AAATTGTTGATAGTAATTTCTTTACTGCACACCATAACAACCATTTTTCA
TGTGTTCTCATACCAGAATGATCGTTATTTGGTTTTCATGTTTGGGCAGA
TTCCTGCAGGTTTAGCTTATTCGATATTACTTCCACTGTTGACAAAGCTT
TCACTAGACTGGTTTCCATTGCGTGAACGAGCCTCCAGTACTTCTTTCTT
TTTCTTTTCCTGTATCTTTGGATTTGCAGTTTCCATCGCACTTGGGACCT
GTTTGGTTAAAGACTATCATGATGCTGAAAATGAAATCAGAAACTTAGTT
ATTGGTCGTTTAGTGTTTGCAATAGTTGCTATGGTTACAACACTTTTCGG
TTACCGTGAACGTAATGTTTATTACAGCAGAACAATGAATAATGATCCAC
TAGCATTATACACTTCGTTGAAAAAGCTTGTTATGAACCGTGATTTTCTA
CTCATGAGTCAATCTTATGGCATATATTTTGGACTTGCTATCACACTTTT
GTTTCAAGTTAATCCACTGTTAATGGAGAAATTTCCGAAAGAACATGGCA
CCTTAATCGGATGGGTTGGTTTCGCTCTTATAATGATCTCATACCTATCA
ACTTTAATTTTTGGCGTATGGTTGGGACGATTTTCGTCTTACCGTAGTAT
GGCAATCATGCTGAATGTGTTATCTTTGGCAGTTTGGTTATTATTCACAT
TACTTTTCATTGAAACTGCATCTTTTTTCCTTTTATTTGTTGTCTATCTT
GGGATCGGTTTGGTGGCATTACCTTATATTTACCTTGGACCTGAACATGC
AGCTGAACTAACATACCCTATTGATGAATCACTCTCCACCGGATTCATCG
TGGCTTTCGGAAACTTGTATTCGTTCGTTTTCTTGTTGTCCTTTGGTGCA
ATGACTAGTAAAGGATATTTTAAAAGTGCTTGTCTAGGTATTTTTTCTGT
TTATATTTTATCAACAGCTTTTGCTGTCGCTTCTCGCTCATATTTGAGAA
GAAGGAATGTTGTATCAGGACAAGTTACTGAAAATACAGTCACTTATTCT
CAATAAACATGATTTTTATTCGACGATTGATACTATTTATATATCGTATA
TTTTTATTGTTTTTTAAGTAAATAACAATACAACATTTTTCATCATCATT
TTCATCTTATGTTTTTCTTCCAAAATTTTAACGGACTTTATTCAGTACAC
TTTCATCCTTTCAGACGTGTTTTAATCCATTGCGGCCTTTTCAAATCGTC
AATATATCAGTCATTTTAGGGTCAGTTTTGCCTTTACCGTCAGACTTTTG
CTCATGAAATTTCGTGGGGGCCCCTCCAAAAAGGTCTCAAGATCTTTTCT
ACTTTCGAACTAGAGCAACATGTATGGATATGTCACACGAAAGATGGTAC
GGACCGTGAGATTACCCCCAAATATAAAAGTGGCTAAACTGAAATTTTAC
CAGTCATTCTCGTTTATCTATTATTACAAAAAATCAGGAAATTGAAGAAC
TATACCCATTCATCTTAGTCTACGTGTAGAGATTCGGGCAGATCCGGGGC
TACAGTAATTTACAATTTTTTATACTCTTATATTTTTAATTACTTAATTT
ATATTTATTACTTAATTTTATACATTATATACTCATTAAAATACTTTAGG
TTTTTATATACATTTCATAGAAGATAGAATTTAAACGTGATCACTGATAA
AAAGATTTTCAATTTTATTTCCAGATTCCAAGAAGGTCCTTTTTAAGTGA
CAATATGTTTTCGAAATCTTGTACAAAAATCAATAAATCGAAACCCAGCA
TATTGGGGGAGATTTTTTCGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004118-exon-sc0000039-1575043694:375575..377847 | TCONS_00004118-exon-sc0000039-1575043694:375575..377847 | Clytia hemisphaerica | exon |
| TCONS_00004118-exon-sc0000039-1510915933:375575..377847 | TCONS_00004118-exon-sc0000039-1510915933:375575..377847 | Clytia hemisphaerica | exon |
| TCONS_00004118-exon-sc0000039-1491911889:375575..377847 | TCONS_00004118-exon-sc0000039-1491911889:375575..377847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:375575..377847 - |
Blast
BLAST of TCONS_00004118 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.307e-20 Identity = 99/427 (23.19%), Postives = 200/427 (46.84%), Query Frame = 1
Query: 244 RRWLMMVICALNASVSGLLLGGMVSIKVIAIHHYGITLEATHWTAYIFLLTSACFSIPISWLITKYGIRKLLIVISLLHTITTIFHVFSYQNDRYLVFMFGQIPAGLAYSIXXXXXXXXXXDWFPLRERAXXXXXXXXXXXXXXXXXIALGTCLVKDYHDAENEIRNLVIGRLVFAIVAMVTTLF------GYRERNVY-YSRTMN-----NDPLALY-TSLKKLVMNRDFLLMSQSYGIYFGLAITLLFQVNPLLMEKFPKEHGTLIGWVGFALIMISYLSTLIFGVWLGRFSSYRSMAIMLNVLSLAVWLLFTLLFIETASFFLLFVVYLGIGLVALPYIYLGPEHAAELTYPIDESLSTGFIVAFGNLYSFVFLLSFGAMTSKGYFKSACLGIFSVYILSTAFAVASRSYLRRRNVVSGQVTEN 1485
RRW ++++ + + + SI I +H YG++ A W + ++LT +P++WL+ K+G+R + + S L+ + + S + + V + GQ+ +A +L + ++++ WF E +++ S F G A+ + LV + D + ++ I +F I+ V TL ++E+ Y SR + P A Y S+ +L N +F+L+ +YG+ G L +N +++ +P E G +G +++ L +I G+WL R +Y+ +++ +++L +++T + +++F+ +G Y+ LG E A ELTYP E +S+G + ++ +F +S G + K + + L A ++ LRR+ + + EN
Sbjct: 83 RRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISI---MFYIIGGVATLLLILVIIVFKEKPKYPPSRAQSLSYALTSPDASYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEE-VNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFT-LNLGHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIFLCVFLTLGAALTAFIKADLRRQK-ANKETLEN 503
The following BLAST results are available for this feature:
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