TCONS_00004198 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004198
Unique Name	TCONS_00004198
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2527

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000041:20969..27729+

transcript sequence

>TCONS_00004198 ID=TCONS_00004198|Name=TCONS_00004198|organism=Clytia hemisphaerica|type=transcript|length=2527bp
TTAGtatggaaaaataaagaaaaagaagatcTTGAAAACTGTGATCAATA
ATACTTTTCATTTGAAGAAGAAGGAATGAATTGACATAGCAACCATAGAT
ACATTGAAAGTTTGATATGATCAACAGGATAAAATGGCTATCACTTGAGA
ACACTTTACAGTAAAGAAAGTTAGGGATCGTATTTCTTTCCACacacaaa
aagaaaatgaataaatACGAAGTCATTGGTATTGTAGGGGAAGGTGCCTA
TGGCGTAGTTATGAAATGTCGGCATAAGGAGACCAACGACATTGTGGCga
taaagaaattcaaagatgGTGAAGACAATGAAGATATGAAAAGAACAACA
TTACGTGAACTTAAAGTTCTTCGAATGTTGAAGCAAGAAAATATTGTACA
ATTGAGGGAAGCGTTTCGAAAACGTGGAAAACTCTACTTGGTATTTGAGT
ATGTTGAAAAGAATATGTTGGAGTTATTGGAACGAACGCCCAATGGTGTA
CCCATACCTCAATTAAAGAGTTACATAAAGCAATTGAACAAAGCTGTTCA
ATGGTGTCATCAGAATGACGTCATACACAGAGACATCAAACCGGAAAATC
TTCTGATCAGCAACACTGGATTATTGAAGCTTTGTGATTTTGGTTTTGCT
CGAAGTATCACAGATTCAGGGACAGGTCAATACACAGATTACGTGGCCAC
CAGATGGTATCGTTCGCCCGAACTCCTTTTGGGTGGTGGTTATGGTAAAG
CAGTCGACATTTGGTCTATCGGTTGTATTCTTGGTGAGTTGAGTGATGGA
CAACCTGTCTTTCCTGGAGAAAGCGAGATTGACCAACTGTATGTTATTCA
GAAGTTGATTGGACCATTACCACCAGCACAAATGCATCTGTTCAACATCA
ACCATCGTTTTCGTGGATTGAAATTCCCTGCCATCACGAACCCTCTCACG
CTCAAGAAACGATATTCCGGAATCCTCAGTACAGACCTTTTGGATTACAT
GGAGAAAGTGCTGCAATTGGAACCTCAGAAACGTTTGAATATTTCACAAT
GTGTCGACCATTATGCCTTCACTGACGGAGGAGGCGGTGGAGGAGGGCAG
AAGAAGAAAGCGCCATCAGAACCAACAGACGTTGACAGTGGAAGCAACAT
CGAAGATGAATCCATCCACGAAGAAGAATGGCTTGAAACTAAACCcacaa
aacataaaacaaaatcTCTTCTCAAAGACACTTCACATAAAATTTCCTCA
CCAAAAGTCACTGCCAAACCGAAAGCTATGAAACATTCAAACAAAgcaca
acaacaacagcaatcTTCTTCTCTTATCCAACAATATTCTTTCGCTTTCC
ACAGCACCAAGAATGAAGATGGAGATAAAATCGACAAATACAGCAATTCA
ACGTCTTCACCGCGCTCGTCCCATTCCTCTGTCGAAGATGACGATTACGA
CAGCCGAAGTCCCGTTCATTCCCAGCCCTCTAAACCGATCAATAGTTACA
ATAGCAACAAAGTAGAGACACCTAGCAAAGAGAAGCGAAGTCAGAAACAA
CCTCATCAAAAACCGAAACAGTCAATCACTTCCAATTTTGCTTCACCAGC
TTCAAGCTCACATCAAACATACTACCAGGCTAAACCAGACCTTCTCAACA
ATCTACCCACCGTCTCAAATCCGAAAGCAAAATCCTCCGATAAAATCAAG
AAATCTAAGAAGACCAGTAAAAGAAATGAATTAACGCAATTAAAATCGAT
GAGACAAAATGATGTAATCTCGACCACCAGCCAACATGAAatatcgatga
cgtcatcacgaTACCGCACAGATGATGGTATTCCTGAAGTTATCCACAAA
CCAACACTCTCCCCTAAAGTTGGACGTGAGAAGATGACGGAGAATCAAAT
TCTGACGCGTTATGacgccgtcaacaagaaacgACGTAAAAACAAGAAAG
ACCCTTCGCTTCCGAAATCAAGACAACGAACTCAAGATTTATACGAGGCC
AGTGATGGAGGTCAAGATAAGTATGGCGATCAGCATTCGGAAGGTCGGCG
TACAAAGATGAGCAATTTTTCGTATTACGGGGGAGGTATCACGCCTTCTG
AATCGAGAACGGCTGAAAAGGTAAAAGGTTATTCTAATTAGGGAGAGAAT
GCAAtctctaattggtcagccccgatgacccttcaaatcccttttTTCCA
GCCGACGCTTAAgagtttggtttttttattccgatttctaaagtttttat
ccgATCGGGTTTAGTTTGGTCTCCCGATCTGTGTATTTACTCTCAAGCTT
TTTTAGGGCAGTGTTCCGGTTGGGATACGCTTTCAATTCATCCAATCGGG
CTAAGTTTGGTTTCCCGATATGTgttaaaaacaattcaatatggctgcca
aaGCGGTGCTTTTTCGTTCGTTCGGGTACGTTCGTTGTTTATCTCTTGCC
AGCTTTTATTTTATATACAATCATTATATTTTGTTGAAGtggcttttaaa
cttataactaAGGAAGATACAACACTG

Run BLAST on NCBI

transcript from alignment at sc0000041:20969..27729+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004198 ID=TCONS_00004198|Name=TCONS_00004198|organism=Clytia hemisphaerica|type=transcript|length=6761bp|location=Sequence derived from alignment at sc0000041:20969..27729+ (Clytia hemisphaerica)
TTAGtatggaaaaataaagaaaaagaagatcTTGAAAACTGTGATCAATA
ATACTTTTCATTTGAAGAAGAAGGAATGAATTGACATAGCAACCATAGAT
ACATTGAAAGTTTGATATGATCAACAGGATAAAATGGCTATCACTTGAGA
ACACTTTACAGTAAAGAAAGTTAGGGATCGTATTTCTTTCCACacacaaa
aagaaaatgaataaatACGAAGTCATTGGTATTGTAGGGGAAGGTAAGAA
TAAACCAAACTTTCTTTTAAGATGCAAGTATCTACTCTCACACATAAATT
TACCTGTTTCATTTATCTTCTGCTTAATTTGGTGTATCCTTGATGCTTGT
TGTTTGTATTTATACAtaaatctttctttttgttattccaGGTGCCTATG
GCGTAGTTATGAAATGTCGGCATAAGGTATGAAATTTGAGCATAGAGAGG
CCATTTCTCTTGCATCCTCAATTTCTTTTACCAATTTCTACGTCAGTATA
AATTTACATTTCCGAAAAGATCAACCTTTCGTTTTCCCATTTTGCTGGAA
AATTTTGTTACCAAACGAGGCTAGAAGTTCAAAACTGTCTAGATACCTTA
AAATAATGGGATTTAAGCATAAGTTTTGTCACCTGATTAGGTATCCtcga
ttttttcatttttcaaaagattttaggGCATGGGGATGGGTTTATGTACA
TCTACATACAATAAGGTTTTCAAATAGTTGGAAAAATAATAAAGGTGAGC
TAAGTgctgtacacattttttaatatcTTTTACAGGAGACCAACGACATT
GTGGCgataaagaaattcaaagatgGTGAAGGTTAGTTGTTCTCTCCTTT
ATAAAAGTCTCTCCTTATAATAAAATATCAGAAAAGATGTGTTGGTGTCC
ATATTAGGTTAGAAAGACTCAAACACAGGATAGTAGACCATTCTAATTCA
TTTTAGCCCATAGTATGAATGAGAGCATGGAttatcattgaaaaaaaaaa
tcttttcgaaTTTTCAGACAATGAAGATATGAAAAGAACAACATTACGTG
AACTTAAAGTTCTTCGAATGTTGAAGCAAGAAAATATTGTACAATTGAGG
TAAATTTTATTTCGACTGAAGATTGTTTGAATAAGACAAGAAACCGTTCA
GTAGTATTAAAATGATAAATTCACTACGTCAACTATCATTACATTGTACA
GTTAGAAATAATGTAATGTGTAATGTGCTCACTTGATTTTTAAAGACCTT
GGTAACTGTAGGTGGTTAGTATTGGTAATATACTGACTTTCCTTGATTGC
CTTCATTTTAGGGAAGCGTTTCGAAAACGTGGAAAACTCTACTTGGTATT
TGAGTATGTTGAAAAGGTAAAGAAAGTGTTGCGATCCTTTCCTCCAATCA
AAACTTGCAGAAAACTCGAGTAAAACTGGTATAAAACTgaaaatgtttca
ataaatgATTGCCGTAAATTCTACAAAAAACAGAGTGGATTTTCTTCTGT
AAAAACTTGGcactaaaaatattaaaacaaaacatttatttACATCAGTC
TGATTTCACATCAAATGTTATttttaataacaataataaaaatataataa
aaatataatagAATTAATACCAACAGCAAATAGAATCCTAGAGTCAATAG
TTACATCTTGATTCcttgataatttttctttcttctttaaaggctatcaa
acaataaaaaaagaccAGATTCCAAATCTCCGtaaaacttttctcttttt
ttattcttacaGAATATGTTGGAGTTATTGGAACGAACGCCCAATGGTGT
ACCCATACCTCAATTAAAGTAAACACAGTATTTGAGTCGTACTCTTTTTC
TATTCCGCATTATTTAACATTCATGGCATACCTCAATGGAAGGTTTATAT
CCCTTCCAGGTCCTCTCATACTTTTATAGTCAACAAATCAGAACTGTTCA
GCCAGGGGGGGgaggtcggtagtaaaatctcagacctaatgacgtttact
acggtggtggtatctatgtgttaaatgttgaaaagattttactacccggg
tagttaaaactggtaaaataagcaaattttagctatttttgtaattctat
TAACTTTTCGggtgacttttctgaaaaaatctgaaaatttttatatattt
ttatatttttgaaaaaattctctgttgGAAGGTTGTTCTACAAACAataa
attctcgaaattttttgtcaatataaaaaaagactttaattctaagggca
aaacattaatttttgcactaagtgaaaaatgtgtcacagaaataatcatt
ttttagctttttttgtaaaatcagtccgaatagcaaccaaaaaaaaaagg
tggtctccatgacaaattgtcccaaaaacttttactagctaccagggtag
taaaatacctcttccaagagtctgggTGGTGGTATGTAAAAAATCCTTTT
ACTACTCATATATGTCTGAGATTTTACTACCCCCCCCCCCCCCCCTTGGT
TGAGCGAATGTTCATCGTTAGtcacaagaaaagaaaatttctattgtttc
acCATCACTTTTTCCGATTTGCTTTTTCAGGAGTTACATAAAGCAATTGA
ACAAAGCTGTTCAATGGTGTCATCAGAATGACGTCATACACAGAGGTATA
ATTCCACTCGTATCAATGATTATGTGCATTGTGTCCTTCAGCCCTCCATT
TCCCTCTTCATTCACAGTGTTAGTTAACAATAGATGATTcctcaaattat
tttcatttcatttccagACATCAAACCGGAAAATCTTCTGATCAGCAACA
CTGGATTATTGAAGCTTTGTGATTTTGGTGAGTTTGGAACATTGAAGGTT
TTTCTTTGCATAATTATTTGTTATTATACTCAACAAGAAAAATCTATGGC
CAACAGTAAGAATTTactattttctcatttttacacTCATAATAAGCTTT
TCAAGAGATATAATTTCTCTTTGACCAACTTTAGGTTTTGCTCGAAGTAT
CACAGATTCAGGGACAGGTCAATACACAGATTACGTGGCCACCAGATGGT
ATCGTTCGCCCGAACTCCTTTTGGGGTGAGTTTGTTTTGTACTTGAAATC
TGTGCTTGTTTGTTACCCCTTCCTTTTTATCTCGAGGTTATAGAGAAAAA
AATCCTGCCCTGATTGGCTACTTCAAATTCCATGTCAGTCCCCATTATAA
AACTGAGGTAGGAGGGACATTCTTAACTTTGAGCGCTTTGAGATGGTAAA
TTTATAAAAACACCTTGACGTATCAgttttgttttggaaaaaaaagaatt
tgaaatttttaaacttttttcggaCAATTCATCGAATAATTCTCCATAAA
ACCTTCATTATAGTGGTGGTTATGGTAAAGCAGTCGACATTTGGTCTATC
GGTTGTATTCTTGGTGAGTTGAGTGATGGACAACCTGTCTTTCCTGGAGA
AAGCGAGATTGACCAACTGTATGTTATTCAGAAGTTGATTGGACCATTAC
CACCAGCACAAATGCATCTGTTCAACATCAACCATCGTTTTCGTGGATTG
AAATTCCCTGCCATCACGAACCCTCTCACGCTCAAGAAACGATATTCCGG
AATCCTCAGTACAGACCTTTTGGATTACATGGAGAAAGTGCTGCAATTGG
AACCTCAGAAACGTTTGAATATTTCACAATGTGTCGACCATTATGCCTTC
ACTGACGGAGGAGGCGGTGGAGGAGGGCAGAAGAAGAAAGCGCCATCAGA
ACCAACAGACGTTGACAGTGGAAGCAACATCGAAGATGAATCCATCCACG
AAGAAGAATGGCTTGAAACTAAACCcacaaaacataaaacaaaatcTCTT
CTCAAAGACACTTCACATAAAATTTCCTCACCAAAAGTCACTGCCAAACC
GAAAGCTATGAAACATTCAAACAAAgcacaacaacaacagcaatcTTCTT
CTCTTATCCAACAATATTCTTTCGCTTTCCACAGCACCAAGAATGAAGAT
GGAGATAAAATCGACAAATACAGCAATTCAACGTCTTCACCGCGCTCGTC
CCATTCCTCTGTCGAAGATGACGATTACGACAGCCGAAGTCCCGTTCATT
CCCAGCCCTCTAAACCGATCAATAGTTACAATAGCAACAAAGTAGAGACA
CCTAGCAAAGAGAAGCGAAGTCAGAAACAACCTCATCAAAAACCGAAACA
GTCAATCACTTCCAATTTTGCTTCACCAGCTTCAAGCTCACATCAAACAT
ACTACCAGGCTAAACCAGACCTTCTCAACAATCTACCCACCGTCTCAAAT
CCGAAAGCAAAATCCTCCGATAAAATCAAGAAATCTAAGAAGGTGGGTTT
TCTAACGGAACCGATTGTGGCGAGCAGAAAGAATCTCAATAATTTTAAAT
TGGACGAGGAACTTAATTTTGGCGAGacagcaattttttttctgagcaTT
ATGAAAAAGTCATTCTTTGAGTTTTTATCGCTTTCATTTTTAGACCAGTA
AAAGAAATGAATTAACGCAATTAAAATCGATGAGACAAAATGGTAAGCTT
tttgtttcattaaaatagtTATGTTCATAATATCTCTTATAGGACGTAAA
AGTCGATATAGATTTTCGTTAAACATTATTATAGTTGAACATATATAAAA
CACAGTCGTGTTCGACGTTTCGAGGTTTGTCTTTGTCAAGCTTCCATAAC
ATGATAAATATACTTTTCGTGTGAAATCAATTGCCTACTCTACTTACCAG
TTTCATCAAGTTGAATCACCTTTTACTGTTTCCTCAATAGATGTAATCTC
GACCACCAGCCAACATGAAatatcgatgacgtcatcacgaTACCGCACAG
ATGATGGTATTCCTGAAGTTATCCACAAACCAACACTCTCCCCTAAAGTT
GGGTTAGTTGCTTGTTTCCACTTAGGTTACGTCGTATCTTTCTCCGTTTC
AAGGGTAAACTTCCTACTCTTCGTaaagtaaggcctaaaagccttgagct
gtctattgtgtagactagttCCCATTCTGTGTGGATTTTCTTCTAAACCA
ATGCTGAGAATCGATAATATAATTTTGAGTCTCCAAATCATAAAAGTAAT
GAATGAGAACACTATAATGATATTTGTGAGAAACCCTCTCTAAATGGCTC
CATCATTATTACTCatggtttttcaaaatctaagaCCCTCTAAAAAGAGA
GGGTAAAAGCTACAACACCTTGCAACAAAGACTGTTTTTGGACATAGTTG
TAAACCATTGTATGggaaatattcacaaaatttacaaatataGGAGGCTC
TTACCCAATCCtcgaaattaaaagtttttcgtATTTCTCATTTCCAGACG
TGAGAAGATGACGGAGAATCAAATTCTGACGCGTTATGacgccgtcaaca
agaaacgACGTAAAAACAAGGTAAGTTTTCTTATTTCAAGGATATAAGAC
TCTggttttaaaatattcaattcTTCAGAAAGTTTATCAATAGCCAATCG
ATGAAGAGGAGAAGAGGCtttaaattttgttattttgtggTAGATACGTG
TGCTCATTTTACCTGAAAAGGCCGCATAACTTAAACTTTCTTTTACCTTG
AACTTATAGAAAGACCCTTCGCTTCCGAAATCAAGACAACGAACTCAAGA
TTTATACGAGGCCAGGTAAATCATTGATCAATTATCCTCTTAACTTGATC
ACTTTTCCTTGGTACTAATGTATTAATGTAAGTTTCGTGGAAAATGGTTG
ATCAAttttaaaaacccttttttaatagattttttaaattttcttgtttg
tttttcaGTGATGGAGGTCAAGATAAGTATGGCGATCAGGTGAGctaacc
aaacaatttttatataaataatACCTAGTAAAAATTATCCGGGGAAGGGA
AATAACTTTCGCCACGGAAAAATTAAGTCACTTTCACCCGAATTGTTTAT
TCCTCGATAATGTAATTGAAGACCCTtgggaatacaccttttcgaccgta
gccgccaattaccgcacgggcatttttttgACCGCTTTATCCCattaaac
tcgatccaatccttttttgacacatatttctattgtctataggtgcgaaa
aaaggactgggatggttttagtgggataaagcggaaaaaaatgcccgtgc
gtcaattggcggctacggtcgaaaaggtgtataggcTACTTTTCACCAAC
AGTCCATTTACGTTGCTCTTCAGATTCTCTACACTACAGTCAACATTACT
CCTTTCTTTTCCGACAGCATTCGGAAGGTCGGCGTACAAAGATGAGCAAT
TTTTCGTATTACGGGGGAGGTATCACGCCTTCTGAATCGAGAACGGCTGA
AAAGGTAAAAGGTTATTCTAATTAGGGAGAGAATGCAAtctctaattggt
cagccccgatgacccttcaaatcccttttTTCCAGCCGACGCTTAAgagt
ttggtttttttattccgatttctaaagtttttatccgATCGGGTTTAGTT
TGGTCTCCCGATCTGTGTATTTACTCTCAAGCTTTTTTAGGGCAGTGTTC
CGGTTGGGATACGCTTTCAATTCATCCAATCGGGCTAAGTTTGGTTTCCC
GATATGTgttaaaaacaattcaatatggctgccaaaGCGGTGCTTTTTCG
TTCGTTCGGGTACGTTCGTTGTTTATCTCTTGCCAGCTTTTATTTTATAT
ACAATCATTATATTTTGTTGAAGtggcttttaaacttataactaAGGAAG
ATACAACACTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002346	XLOC_002346	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000041	supercontig	sc0000041:20969..27729 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.93229	1.38959	2.06234	1.86293	9.62273	8.05666	5.64112	7.35879	3.37951	4.04991	3.00613	2.50239	4.80454	3.97133	2.83717	2.93985	1.81217	3.27894	1.79186	4.37757	2.57863	1.99017	1.70446	1.76056	9.50169	10.0251	2.84398	3.29947	2.99805	3.00867

Blast

[Close]

BLAST of TCONS_00004198 vs. Swiss-Prot (Human)
Match: CDKL5 (Cyclin-dependent kinase-like 5 OS=Homo sapiens GN=CDKL5 PE=1 SV=1)

HSP 1 Score: 452.21 bits (1162), Expect = 8.386e-143
Identity = 203/313 (64.86%), Postives = 255/313 (81.47%), Query Frame = 3

Query:  207 MNKYEVIGIVGEGAYGVVMKCRHKETNDIVAIKKFKDGEDNEDMKRTTLRELKVLRMLKQENIVQLREAFRKRGKLYLVFEYVEKNMLELLERTPNGVPIPQLKSYIKQLNKAVQWCHQNDVIHRDIKPENLLISNTGLLKLCDFGFARSITDSGTGQYTDYVATRWYRSPELLLGGGYGKAVDIWSIGCILGELSDGQPVFPGESEIDQLYVIQKLIGPLPPAQMHLFNINHRFRGLKFPAITNPLTLKKRYSGILSTDLLDYMEKVLQLEPQKRLNISQCVDHYAFTDXXXXXXXQKKKAPSEPTDVDSGS 1145
            MNK+E++G+VGEGAYGVV+KCRHKET++IVAIKKFKD E+NE++K TTLRELK+LR LKQENIV+L+EAFR+RGKLYLVFEYVEKNMLELLE  PNGVP  ++KSYI QL KA+ WCH+ND++HRDIKPENLLIS+  +LKLCDFGFAR++++     YT+YVATRWYRSPELLLG  YGK+VD+WS+GCILGELSDGQP+FPGESEIDQL+ IQK++GPLP  QM LF  N RF GL+FPA+ +P +L++RY GIL++ LLD M+ +L+L+P  R    QC++H  F           + A  +P  V+S +
Sbjct:   10 MNKFEILGVVGEGAYGVVLKCRHKETHEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLEEMPNGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGNNANYTEYVATRWYRSPELLLGAPYGKSVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPSEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILNSVLLDLMKNLLKLDPADRYLTEQCLNHPTFQTQRLLDRSPSRSAKRKPYHVESST 322

The following BLAST results are available for this feature:

BLAST of TCONS_00004198 vs. Swiss-Prot (Human)

BLAST of TCONS_00004198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CDKL5	8.386e-143	64.86	Cyclin-dependent kinase-like 5 OS=Homo sapiens GN=...	[more]

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TCONS_00004198 (transcript) - C. hemisphaerica