TCONS_00004218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004218
Unique NameTCONS_00004218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3140

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004218 ID=TCONS_00004218|Name=TCONS_00004218|organism=Clytia hemisphaerica|type=transcript|length=3140bp
TGTCAATAGAATCTCCAAAGGGATCACTTTGTTCAAAGACTTGCTTGAGG
AAGaacgaaaaaaatcgaaaagatGTTCATAGACTATTATGGAAACCGTC
GCAATGTCGTAGAAACCAGGTgagtcttttttatttttacggGAAATTTG
TGATAGcgttatgacgtaatgttatatgTCCATAATGCATTTCGATAAAC
ATTCTAAGAACCAAAAGGACGGACAATGCTTCGGAGCGTGGTATGAAAAG
TGGGAAGAAGaaataacactgaaaacacTTAACTCTTGCAGCTAACTTTT
GTTGCAGATCACTGGATGTTTAGGgatttgtacatttttttctagTTAAT
ACATAGAACAGAATATTTTTGTCGCCACCATCTAATGCAGTCTAAAAATG
TTATCAGAATCTGGGATTGATCTTGACTTTGACAATTCTGacaattttga
catttttgaagaaGTAGAAAACGATCATCAGCAACAGGGATACGAAATTA
AAGCCAAAAGTTTGACAAGATCTAGTGAGAATCCGTCCTTTTTGATGGAC
CCAGATGTGAAGATCAAGCCAGATCCGGACGACCAAGCCATGAATATGCA
AACCATGGAAATCATGAATCGCACCAACTTCAAACAAGCTCTTGAACGAG
AGCGCATCATGGAAGTAGAGCGCAAGGAGCAAATGAAGGGTTCGCAACTT
CCACAACAACAAACTTTCCTCATGAAGCAACAAAACACTACACATTTACA
ACAAAACAtccaacaacagcaacaacaaccacaacagcaacaacaacaac
cacaacaGCAACAAAGATTCTTTAACAACTCTAACCCTGTCAGCTTCCAA
ACACAAAGAACTGtcaataatcaaaacaaaggcATCAAGGCTAACATGCC
AGCGATGAGTTTACCAAGCAGTGTTTTGAAGGTTGAAACGAAGCTTCAAA
ACCCAACCAGCTATTACCTGAAGCAACAACAGAAAAGACAAGTGCGCGAA
TATTTGGAGCAGAACAACCAACTCAGCACCAACATGCCTGTCTCCGTACC
CACCGCTCTTCAACAGAACTACAACTTCTCATCCGAGTTCTCCTCACCAA
GCTTCATGAACAGTTTTGGTGGTAATCCAATGTCACCGAACAGCCCGGAT
GCCGCAAGTTCCGTCGCTAGCGGTGGAGAGtcCAATGATTTCTTCGAAGA
TCTATTTAGCGAAGACCTGAACATTTTTTCGGCAACGctGCCAACCAATA
ACAACTTGCTCGATACCTACGTGAATAATCCTACACAGAAAAATGAGGAG
AATCAGATTTCGATTTCGTCCTCGTGTCCGGCAAACGTGAAGCAAGAAGA
ACCGGACACTTTTTTCAACAAAGAACGCCAAAAGAAAGATAATCATAATA
TGATTGAGCGTCGAAGGAGATACAACATCAATGATCGAATCAAGGAATTA
GGAACATTGGTGCCCAAAATCGACAATGACATGAAACAAAACAaaggtac
catcttgaaatcaTCTGTGGATTATATTCGCCGTTTGAAGAAAGATCGTG
AACGATTGAGAAACGTAGAACATCGATCACAAAGTCTTgaagatataaac
aaaaaattgttgCTGAGGGTACAGgaattggAACTCATCCTTCGTGCTTC
GAACATTACAACCACATTACCTGAGCCTGATCTCTCCTCGGCCGCTTCTC
CTCAACTCACACAACTCCTGCTAAACAAACAACTCTCACAGCAACAAAAC
TCTGCACAACCAACGCCACAACAACAAGCGGCCGCTTTCTTACttcacaa
acaacaaatctCGACGTCGCTACACGAACTTTTAAAAGCGCCACCAGGTA
CCAGTTCCGAAACTACCGCTATGAGTAGCAGTTCGGTGGATAGCCCGCGC
CGGATGGAAGATGATGACGATTGTGTTATCATGGATGAGTGAGTGATTGG
ACGCAGGTTACTATGAAAGGACTTCGACTCGCAATCCAATCGCAATTAGC
TGTTAGATTTACAGTAACAATTGTTGAACCCAGAGCTAAAGTCACTTAAA
TGGGCCTCTTTTGCTAGTAAGAGAAACGAAATTTCCAGGTGAAAAGTAAC
GTCATTCACAATGGGATTCTCGAAATGAGTGTACATTACAGACCGGCTAA
AACGAACTCTATATCTCCGTTCAATGGAGACAAGTGATTTTTGGGGCTAT
ATTTTTGCATCTCATGTTTTTGCTATTCAATCAAATTAATCgataaaaaa
gacattttttgttattGAGGACAGACCAGCCACAGCGCCTGCAGAAATGG
GTCCACGCATTTTCGTTAGTGTAATGTTTATGGAAAGAAGTAATTTTAAT
AGATGTTGATTTTCTGTTTTGCTAATTTTCAGCACTCTGGGATGCACTAA
ACGGTTGAAAGTGTTTTTACGCACACATTATATACATTTCAAACCTTTTA
ATTTTCTGAACTCTCCTTTGGGTGAGAATAAAccaatttattgttctacg
ggcccgaccgaccctgtttatttaatattcgaaaaaaaaaaataatttag
aatTTGCAAAACTCAAGGTTGGACTTTTGGTTCTTCGTTTTTGAATGAAC
AATTGAAAAAGTCTAAATACATAAGGTTGATGGTATttgacaattttatt
tttactataCCAGCCGTCCGATATTTTTCTGGAGGTTTGCCCGTAGAACA
AATTTGTCTTGCCTTatttaaaaaagagaagaagaagTGATCATCATATT
AATCATTGTTGCATTCGAAACTGTGTAGAACTTTATGACCGACCATGTAA
ATTTTTCCCTTCCCCTCCTATATTGAGAACAAtgtgtcttttttttcttt
tttttcaaattatatatGCATTATTTCTGGACAAAGATTTTAATACTGCT
TTTATGAcgtgaaaatggaaaaatattgGATTTTGCAATTATATAATTAT
CTTTCGTACATAATGATAAAAATTAGAATTAAAGTGTTTATTAGAATTTC
TccttaaaaattgtaaaatattcaaatctttcaaCGTGCTCTTTGTTTTA
ATGTAAATAGAAGATCAATTTTTTAACccgttttgttgtttttcttttct
tcatggAAATGCTCTGTTTTGGAGAATTGACGCCTCGATG
Run BLAST on NCBI

transcript from alignment at sc0000041:137954..152581+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004218 ID=TCONS_00004218|Name=TCONS_00004218|organism=Clytia hemisphaerica|type=transcript|length=14628bp|location=Sequence derived from alignment at sc0000041:137954..152581+ (Clytia hemisphaerica)
TGTCAATAGAATCTCCAAAGGGATCACTTTGTTCAAAGACTTGCTTGAGG
AAGaacgaaaaaaatcgaaaagatGTTCATAGACTATTATGGAAACCGTC
GCAATGTCGTAGAAACCAGGTgagtcttttttatttttacggGAAATTTG
TGATAGcgttatgacgtaatgttatatgTCCATAATGCATTTCGATAAAC
ATTCTAAGAACCAAAAGGACGGACAATGCTTCGGAGCGTGGTATGAAAAG
TGGGAAGAAGaaataacactgaaaacacTTAACTCTTGCAGCTAACTTTT
GTTGCAGATCACTGGATGTTTAGGgatttgtacatttttttctagTTAAT
ACATAGAATNATCACTGGATGTTTAGGgatttgtacatttttttctggTT
AATACATAGAACAGAATATTTTTGTCGCCACCATCTAATGCAGTCTAAAA
ATGTTATCAGAATCTGGGATTGATCTTGACTTTGACAATTCTGacaattt
tgacatttttgaagaaGTAGAAAACGATCATCAGCAACAGGGATACGAAA
TTAAAGCCAAAAGTTTGACAAGATCTAGGTAAGGAATCTTCTTTCAACAC
AAATCAAACTAGCTAGATTGCCAGTCTTCCCATGCCATTTTGTGATTAAA
TGAATtaccagtttgcagagtatggcagAAATCATTGAGATCTCGGGGGC
AGAGTGTATCAGTTTCAAGGGCaggggcaaatttttgataattttctggT
CTCAGGggcaaaatcactaaaaattggccaattttgttactttttctggG
TTTTTAGCAGCCTTTCTGCTGGGTGGGTACACAAAGTTTTTAAGGGCAGG
ATTTCAATCGTATAATTTTTCCTTGGGGGACAGCCATGAGcatgacatgc
tctgaaaacccaaaatgaAATGTAGCTAAAACCAAGCCCCTAAATACAGT
AAAAAGGATCTTCATTATGGCGCACCAAAGCAGAAATAGATACTGTGTTT
TAAAACAACACTTTCTTTTGTAAGAGGATACTTTCTATCTTCATCCCgat
ggtgtcaatcgaacaagttTGAACATAAACCGtgatcgaaccaatcaaat
acGATCGAACAGCTGATTCCTGGATAaaattcgattgtgttcgattgcgt
tcaaatTACGTTAGATTGAGATTTAATTATTACAATAATATTTGATAAGA
Ttgataccgtgagtggtcctaaatccgacagccctgcctaattccgaccc
cccaaataaaggttatgaaaaaaattctatgtttacaaacactccctctc
caagttgaacgataaactattgcaagaattctcaaattcaaaacatctaa
caagaagATGGCGAtaatgtcaaaatgtcaataatgtaattaaaaagtgt
gagttgtaaaagtcTGAatgtaattaccttttattgtcATTTATGATGTT
GGatatattgcaaaaaaaaattatgttttgtataagaagcaattattgtt
aattatttggttcaactggtttactgtatcaaatttctcagtttagttga
cactttggtaattttgttgcgtcacagcaaaaggttttttttattttagt
ttgtatctttgaaagaccacgtcggatttaggcagggctgtcggatttag
gaccactcacggtattatAATGAATTAGCCCACTCCtcttagagctttag
cgtggacAGATGCCAATGCGTCATTCGAAAATCAAGTAGAGCGAGAGCAC
TGAAGTATATCATGAGGCGAGAGGGATAGTTGTTTTGCCGAACGCAACTg
tggtcttttgaataactaattacttcacagcagttacctaggtttaccta
gagacaagatgatatatcatgtttttattggctgtgGGAAATAAGTAATA
TATGTGTAGTAataagttattcaaaagactgtcgtCTTCACTAAAACATC
TATTAATGTGAGCGAATGCAgaccatattttagaaaggcagggcagcgtc
caaattttagtatgttcaatctattcttGATATTACaccaccctgaaaat
cttttgccaaaagaagatagctatcaaaagttagaagctgaaaactcact
ttccctaaccccttgcaggcaaaaacgcgttcgtttatctcccaaacaat
tttatacacaacggtggagcgcacattttctcgggccatttctgagaagt
ttgaattacgggaaaggtgtattgattgacaccgtctggtaaaATGATAC
TATCTTTCCCAAAATGATACTATCTTTGTTATaatctggagatccatact
ctctaagAACCAAAACTTACACCACCTAAGCAATAatcccatcagaagct
actcaGTGAGGGTTTGGTATTtatgacccagtttgaatttgtttatattt
ggtttgaatttcttGCCAAAAAAGCTGTTGATAAGGTAGCCAATCAGATT
GTGCACTTCCAATCATAACAATCCGTTAAGTCTGGTACACTAGTGGAATT
TTTTTATGTAAACAGTGTAGGCCGAATTTCTCAGCTATCTTTGCTCAAAT
GATGCTATCTTTTTGAAACCACACtatctttttcatctttttcaaaacaa
tgcGGTCACTTGGGGTTACTTTCATTATTGAGGCTAGCTTAAAGCTCTAG
AACAGTATCCagtaacatgaaaaccagaatattattcttcaatgggaatc
aaaactataaagtgcactcacaaacatcaatttgtcagatctaacaaaat
taatgacAACACTTTCATCCTTTGGCAATCAAACAATGGACTTTTTGCCA
AaaaccttgtaaacattccaacaacttccattgaaATGAACTGCTACAGC
TAAGCTCTTCCATTTTGCGCTGTTTGAGGATTAAGCTGATTAAGGTGAAA
AATTtctaatctgtcaatcattttctcaagtgaAGAGTACGCTaagtgat
tctagctttacgatagtgccgcagatcatcagtggatagtattcaactat
tatccctttattttcatttctggaacttttgcaaaaaaaaaggagaaata
CAAAAGTTGTATTTGTGACTGCTAtaattcacatactgaatttgaaagat
cttctatgtttagtttttatttgcaaacttcaaaaaactgatttttgtcc
tgcttttGCAGGACTTaagcttaagtgcttgcgtgcagcattgGGTACCA
AGTCAAAGTGTTTCTTGTAAATTTTATATGGAGAGTTTGAAGAGTTTGAA
GGCTATACTGACTGATTGCTACATGCAGCAGCCAGTTAAGCAACCaacca
aaattgttttttaacgGTGGTAAGGTGGAATAGTACTCTTTTCTAAAGTT
GTCTAATTCTTtgatttgaaaatggaataactttgtaAGCTGGCatagaa
tcataaaaaaataagattagCATAAAAATATAAGGCTCTGGCATAATGAG
CATGAAATATGAGTGCAAAACCTCTATTTAACACAATTTAAAATTATTCA
GGAAGAACAGAAGAAATATCCGAATCTTATCTCCCCCCCTTCCCCTCTGT
CATTGTTGTGTTTCCCTGACACTGCCAAATGGGGCACAGACAACAGGTTT
CATAGAACCTTTTATGGGCATAAAGTTGATAAATTCTAGAATTCTTCTTT
TATGCCAAATCTTGGCATAAAATCATTACTAAAAtcagggggggtcatgc
agttattatataaacactatgacaattactaccgtggtggtatataaacc
aaaatttgggaaaacatttactccaccagtggactaactgcaacatgggt
ggtgcctaagcccaaaattgtcgattttggttggatatggtgtactaagt
gagcacatttttcaatttttcacttaaaattttaggtttttaaaaattcc
ggaagcaaaaaaattcaaaacatttNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNacccccccccccccctgctaaAA
TTGGAAATTCGGAGTGCTTTGTTTggcattttttaattatttcaaggagt
ttcaaatgaaataagttaaataaatgaaatgaaataagTAAGATTTCAAT
TAGTTGAGAGATTGAAGCTCGTGTGTGAGGCAGTAATAAAAacaggattt
ttgaaaaaaataattcttcaaACTTATATATTTCCAGGAAGGAAATGTTT
TTAGCATAAATGATTTTTCTAACTTTCATATTCAACTTTCTTTTGCAAAA
TAATTAAAGAATAAAGATCAATCATCTTGTTATCTGTTAAATTGGAAAAT
GAGTACTTTCGGGTGCGCTTTTTCAAACTCTTGCTCTCCGCACAGCAAAT
TTATTTACCAGGGGTAAAGAAATCCGTGCTATCCACGGGAGACATCTATC
AgcctaaaagtttttttaaacaaaagttaatattttaaaaagcaacttTT
TGTAATCCAATACCAATAGACAATGGCTTTTTTTCAATAGCATAGGGTCA
TACATGTAATGAATTTCCTGTCTTAGAATGGACAGTTATCCTGGTATAGA
ACCCATACCAACTGCATCAGCTGCATTACTTCATTTCATCCAAGTAAAGC
ATTGGATATTTATGTTGCCACAAAGAATATCAAACCAACATTTGTATTCT
GAAACGATATCCTACGCACTAAAGTTACTAAAAAGTGATATTGATCCGGA
AATAAGAGCAATTCTACAATTTTCTATAACTAAAACTCGGCCTGTTTGGC
TAGACATTTGGGGCTAAAGTTAATTGGAATACTCCGTTGGTTTAAATGCG
CTGCTTTTTTAAACGTGTATATTGACCTAGAAATTTATTATTGACATTTG
AATTATAAATCCTTATTTATGTCTCTCTTTTTACAATTAAGCTTTATTTC
GCCACCTTACAAATATCGCCCATGCGTAGTGTTTATAGTAACTTGATGGA
CGCTTGTCTTCATATCATAGAGTTTCCTTACATAAGAAACTTATCAAACC
ACTAaaaactttgtattttcaatttcaatatttaaaatgTTAAATTCTCT
ATTTAACCTGATTTAACTGGCCTTTTAAAATTCCCAAATAGCCTCTTTAC
ATAGgggtgggaatttcccttttaaagtcattttgagTGATGAAggtgat
aaaaaaattttgtatCCATTTTACGAATTTGACATGAAAACACTAATCTT
TAtattacataattttttttagataaacTCATCCAAGTAAAGATAATGAC
TTGCCTATGGAAGTAAGACTTTTAAAATCctaattaaagtaaataacatt
tctaaaaattctaaaCATTTAAGATATTCTAAAATTAGAAACTTATTACT
TTTCGCAATAACTCTGTAAAATGTGTTTCCATTGTGGAAGTGTAACAGTA
ATATTTTCATAATACAATATATAatacaaaaatgacaaaaccttaaaata
atCATCAACTAAACTCGTGTTTAACTCATAAAAAATCTTTGACTAAACTA
AATAGAAACGTTGCAAGTGCAATCCCACCATCCATCCAATGTTCAGGCAC
AACTAAAACTGAAGTGTTTTCTCGCATTTAAACTGAACTTCTTTAAACCT
CACATGTGATCAAGATAACCGAGTCACCTGATTCTTGTTCCTCAAATAAA
ATCTACTTTGTCTATTGCAATAATATTTTGATCAAATACTGTGATCAGTG
AAGATCTCTTTCGTGAGTTTTTTATTatgcaaaattttttaattttattt
tgcaaGTGTATTTTATAATGGCTGTCAGGACATACAATCTTCTAGCTCTA
TAATCAACTTCGTCTCTCTCTCACTTCATCATAGtataacaaaaatttta
atGCTATAACCTGTTAAACTCATTACTGCAACAAAAGATACAATTGTATT
ACGAATTGGAAGTAGCCAATTAATTCATCAGTCGAAAAGAAAAGTGCTCT
taaatcaaaatgatttttcaatgtTGAATTCCGAAATTAATTACTCTTAC
ATATTATTCTTAAAGCAAGAAAAGCAAAGGGATACAACATTTAAACATTT
TAATTGACTAGTATTTGGTTCGATTTTTGAATATTATTTGGCTACGATAA
TGAAATCCTTTTCCTTGttgtgataatttttttttgtcttaaatTAAAAA
TGAATTCAAGTTCGCTAATAACGTGGAGTCAATggtaaaaataatatttc
tatTTGATGTCAGAGTAAGGCTTTTAAGCAGCTTNAGTCAATggtaaaaa
taatatttctatTTGATGTCAGAGTAAGACTTTTAAGCAGCTTGCTTAAC
TGATTTTATCAgattaaaaacatgaaatatgtttgattatgcttataaat
attCCTTCTCTCTATTtttacattttgataaaaaatagtagaaaacattt
gaaattaTACTTTTTTTGAGAGAGAAAGGATCTACATGTAatttttacat
aaaagaaaacatgctaaattaCAGTTATACACTTCGACAAACATTCACTA
TGTATGTAAATAAAATGTATTTTATCTAGTAGTGGTATGCTTTTTTAAAA
TTAGAAACATCTAAAATCTGTGAATTTTGATCAATCCTAATTCCATAGAA
AACTATGGGTATCTAGCATGGCGCTCGAAATCTATCTAGACATTCATTAT
CTTACAACTTGTAAACTTGGGATTTTTCGACTTTTCTTTTGGTTTTCTTC
TGTAGTGAGAATCCGTCCTTTTTGATGGACCCAGATGTGAAGATCAAGCC
AGATCCGGACGACCAAGCCATGAATATGCAAACCATGGAAATCATGAATC
GCACCAACTTCAAACAAGCTCTTGAACGAGAGCGCATCATGGAAGTAGAG
CGCAAGGAGCAAATGAAGGGTTCGCAACTTCCACAACAACAAACTTTCCT
CATGAAGCAACAAAACACTACACATTTACAACAAAACAtccaacaacagc
aacaacaaccacaacagcaacaacaacaaccacaacaGCAACAAAGATTC
TTTAACAACTCTAACCCTGTCAGCTTCCAAACACAAAGAACTGtcaataa
tcaaaacaaaggcATCAAGGCTAACATGCCAGCGATGAGTTTACCAAGCA
GTGTTTTGAAGGTAAGATTTTCATCCCTTTTTCTTATAACAATATGGTTC
ACATGGTTTTCTTCCACTTCTTCAACAGATGATGattataataaattttg
ttCTGTGATCACAATACTGTGTTGTAAGCTGAACAACTTTCGGTCAAAGG
CTGCAGCAGAGGGTCGAAAAGTTAAATTTGAACCGGCATCCACACAGcat
actttcattttcattaagGACATGCTTTTTCATTCGCGGAGTTTTCTTTT
AATCAATTGTTTTGAACGcgttcaatgcaatgacttcctGGATCAGGTCA
CGAAGAGGAAAAGCTTGTATCTTAATTCCATAATCTACTGACTATCATAC
CTTTATTTCATGTAGTGTTTTACTATAAGAAATTGATAAAAGACTGCCTT
TAGTTTTATTGCATGGATGGAACCTTAGGCTTGCGTTTTTATATGTTCAG
AAAAAGGTATTTCCAGTGACCTGGTCAGACGTAATAAAAAAACAGCTCTA
AGAAAAGAGGAAAACTCTGTAGGGAATATcaaggaaaatcaaaaaaaact
aattaagtcctttttttcaaaaagagagAGTAACTTTTGGCATAATACTT
TCAATGCGTGTCACTTGTTGAAGCATGCCTAGGCTATCTTTGGATCAAAT
TTTTTCTCCGTTTTGTTTGTcttgtttttgtataaaagttcacttttttt
acaaatatttttcgaGTCGTCTTGCTATATGAGACTTTGTACAGGTAGTC
AGGTTTCAAGCTACCTCTGCACGAACATTTTGTATTGAATCGTTCACACA
AGCCACAAAGCATAGTGTACAGTAGTTGATTGATCGGAGTTGGTTTGTAT
ACACATCGGAAAACACAAATAAAGCACATAGAAAGAAGGACACAAAATTA
GCACGCCTGAACAAAGCCAAGCACCAAAACCGCATTGTTTTGATTGCAAA
CTTGTCGCGATCATACAATTGCTTCATTACGGTTTTTTGATGAAACATAC
TATACTGCGTGTTAGTACTAccacaatataataaaaatcattttaaactG
ATTGTGATCAGAAAGTTTTACTAATGGTGCTTTTCATTGTGAAGGTTGAA
ACGAAGCTTCAAAACCCAACCAGCTATTACCTGAAGCAACAACAGAAAAG
ACAAGTGCGCGAATATTTGGAGCAGAACAACCAACTCAGCACCAACATGC
CTGTCTCCGTACCCACCGCTCTTCAACAGAACTACAACTTCTCATCCGAG
TTCTCCTCACCAAGCTTCATGAACAGTTTTGGTGGTAATCCAATGTCACC
GAACAGCCCGGATGCCGCAAGTTCCGTCGCTAGCGGTGGAGAGGTAAggg
tttttgattttgtatgtgGTCTTATTTTTACGTTTTCTACCTAACTTATA
ATAAGCATCATAaggctttttctaaagaatccTTTATCAATGTTATGTAG
ACTACTCAAGTGCACTGCTACTTTTTATAACATCTCTTGAATTATCTAAA
AGCACTTGTTGCATAAGAAGAATGTCTATGTTTGATAAtttaatcttttt
aatttcCCTTGAAAGCTTTTCCAACGAGAAACTGATACTCGTAAATTTAA
TTATAATTGATTGGATTGTTAGTCGGTGGAACTTAAGATGATCAATTTAT
CTTTTAATGTGGCCTAAATAATGTGATTTGCATTTGGGTTTCCAAGTCAG
TTATAACGTTAAAAATTGCGAACCTTGTTGAATGTTGCGGTTACATAAAA
CTTGATTGTTTTTGGGTCgcctttaaaatgaaagaagcAGAGACCAATTG
AGTTTTATATACCATGAAGAGAGAGGCATTGAAAGAAATTATTTCGTAAT
TTGAACAATATAAATGTAACCTGAGAAGacattttaaaacatttcgtTCA
TGAACGAAGGAAAGGGGGGCCGGTTTGCGTTTCTTAATCTGACTTTCAAA
ACGTTTTAATGGTGAACACGcgtctttgaaagatatttaaaGGGAAGGTG
TAACCAAGGTGGATCGAGATGGTTTTAATGTGCGCTGCTTCTGTACGTCA
TTAACTTTCCTTAGCGCATCTCTTTTGTTTAATTAACGTCATCGTTTGAG
CTGGATTAGGGTATCCTTTCAAACCAACCTCTAGGTCACATTTCTAATTA
ACTTTTTgttattgtgtttttttttagtcCAATGATTTCTTCGAAGATCT
ATTTAGGTGAGTTTCAGttacttaaaatttgaaatttgttcaATGACGGC
TTTTATAGGTTATATgctttatattatttttaataGGCTTTTGGTTAGCA
TTGAGATTACTGATCCGATAAACCAGTTGTTTTAATGAAATAGCTATCAG
TAGTCAACTTCCTAGAAAATATTATGATGGACTTGCTCTCTCAACCAATT
TTTGAGAGTTTGAATAATGTGCAATTGTCATTACAGATTTTGAAATCTAA
CACTTTATGTTCTGTTCAATTTGAATATCTCGACCATGTCAAGAGATTGT
GTGTATTCATGTTCGCACACCCCTCTCTATTTTCGTGTCATCAATTTACA
TACTGTATCAAATTGACCGATTGTTTTTATTCTCTTTTGTTTTTAGCGAA
GACCTGAACATTTTTTCGGCAACGGTAAgccattatttttcaattttcaa
ctaaCAAAGTGTTATCGTATAGAACCCAATcagtgtttttaatttttcta
aaaaagcgattcattgtgggattgtttcggaagtattacaatagaatttc
ctcgaggaattcctaagaaatttctattgtcccccccccccgaaacaatc
ccacaatgcatcgctttttttagaaaaatcaaaaactccaataAGATCTA
TTATGATGAATTGAACTTTTTGCCTGAGACTGAAGATTATTCTAACTGAA
GTTGATAAGGGAGAAAAGTAATTTTGTGGTCGCTTTGAATTGGTGCGGCC
TCTTCCAATATCTTCCTTGATGAAGAGCAGTCTTTTTTTCTACTCTCCCA
TTCCGTGCAAATAAACGAGCTTCCTGTTTTCTCAACcacaaacttctttt
tttttgtcgtgaaaaaaaagatttctcgcaactcatttttttctgctttg
tttatttttagctGCCAACCAATAACAACTTGCTCGATACCTACGTGAAT
AATCCTACACAGAAAAATGAGGTGAGGGTCTCtaagagttcttaaaaaaa
tacaagTCGCATCGCTCATAACACACATCTTAGTTTTCACCCCATTAACG
GTTATTGGAAGGTTCTTCAAGGGTGGCCTTAGTATATTTCAATTCATTCA
GAAATTAGGATTTTCCCGTCTCTCCTGTTATACTTGAGTGTTGAAAGGCT
GTGACCGATAATTGCGTGTAGAATTCAACTCATGTCTGATTCTTTTCACG
CTAACCTTTCTTGTTAAGCGTGGGTTTTCATATCATTTGTAAAACTCTTC
ACTTAGATATGATTAATTAAAACTACCCGAAAGCTTGAAGCCctaattta
gttttttttggaTTAATCCGAAGGTTCGAGTCATGGTTGTCATAGAATGG
TCTGGGGCACACATGAATCGATACTGCCAATGAAAATGACATTGGGATCT
GAAATAGCTTTCATATACAATGAATCTTTTCAAATGCCTGTCAAATTCTT
TTGTAAACCTtcattaaaggtttttttacataagtgttctcgtttcatat
cagacacatatttcatatcaggacagggtctccctattgttttattatgc
tgatataagcaaaaaaatgtttttctttcccttttcctaatcaatcttgc
tccacataatgtgtcaattcaatgtgaaaaaaacttggaaattaaaattg
atgagtaagcaaacgatatcactcttatttaaaaacaaaacctttaaatc
gtTTAAAACAATTTAATTCACTTCATCACGCCTAAACTACGCCTGACATA
TGTTTACGGAACAAATAAACGAGGTTTTATTTCTACATCCCTCTGATTAC
TAAGAAGTGTCCTTTGGAACATTCCATTCTCAAAAGTTTCAAACCACTCA
AACTTGATTTGACATGTTCACCTTCTGAGAATTTTCtctttgttgatttt
gtttACAGGAGAATCAGATTTCGATTTCGTCCTCGTGTCCGGCAAACGTG
AAGCAAGAAGAACCGGACACTTTTTTCAACAAAGAACGCCAAAAGAAAGA
TAATCATAATATGAGTGAGTTACCTCTCTGACCTTTTTTCGACGCATTGA
TATCTTTTTGTGTTTGATGATTCGTTGGCTAACAGAATCATTTCTCGAGT
CCCCctcccccccagcggaccttcaattcacgcaatcacgcaaatttttt
ccccaaattcacgcattcacgcaatattttttcgcaattcacgcaatttt
tgttcNgccccccccccccagcagaccttcaattcacgcaatcacgcaat
ttttttccccaaattcacgcattcacgcaatattttttcgcaatttttgt
tTTACacaaaagctttccaattcacgcattcacgtaatttttctttactt
ttcacgcattcacgcattttttctttacttttcacgcattcacgcaagta
aaaaagcccattcatgcattcacgcaaaccgctggggccCCCTTTCTCCC
CAAGCTAAAGTAAAAgatattttcttaatttctgTGCAGTATTCAAAACG
TTCTTTTTTCTTGTCTTCAGTTGAGCGTCGAAGGAGATACAACATCAATG
ATCGAATCAAGGAATTAGGAACATTGGTGCCCAAAATCGACAAGTAAGTT
GATAACCTCTGTGAAAATTCTGGTATCTATATTGAAACCATCCAAATATT
TCATGCCTTAGGGATCTTGGCTTTTCAAAAGATGAATATCTCAGATTGGT
GTTCTTCTCCCATTGGTCAATCTGGCTTAATAGGAAATTTATTTTCACTC
TCCAGGCAAATAATTGAAAACTCTTCTTCTTTCTAGTGACATGAAACAAA
ACAaaggtaccatcttgaaatcaTCTGTGGATTATATTCGCCGTTTGAAG
AAAGATCGTGAACGATTGAGAAACGTAGAACATCGATCACAAAGTCTTga
agatataaacaaaaaattgttgCTGAGGGTACAGGTAAGAATAAAAGCCC
ACCCATCGCTTGTGTCGAAATGTGCAAATTTTTGTTGATACTAGGCGCAA
TTGAATCATCAATCGTATCAATCTTTTATCTCATACCActtaattgtttt
gttttttttcaggaattggAACTCATCCTTCGTGCTTCGAACATTACAAC
CACATTACCTGAGCCTGATCTCTCCTCGGCCGCTTCTCCTCAACTCACAC
AACTCCTGCTAAACAAACAACTCTCACAGCAACAAAACTCTGCACAACCA
ACGCCACAACAACAAGCGGCCGCTTTCTTACttcacaaacaacaaatctC
GACGTCGCTACACGAACTTTTAAAAGCGCCACCAGGTACCAGTTCCGAAA
CTACCGCTATGAGTAGCAGTTCGGTGGATAGCCCGCGCCGGATGGAAGAT
GATGACGATTGTGTTATCATGGATGAGTGAGTGATTGGACGCAGGTTACT
ATGAAAGGACTTCGACTCGCAATCCAATCGCAATTAGCTGTTAGATTTAC
AGTAACAATTGTTGAACCCAGAGCTAAAGTCACTTAAATGGGCCTCTTTT
GCTAGTAAGAGAAACGAAATTTCCAGGTGAAAAGTAACGTCATTCACAAT
GGGATTCTCGAAATGAGTGTACATTACAGACCGGCTAAAACGAACTCTAT
ATCTCCGTTCAATGGAGACAAGTGATTTTTGGGGCTATATTTTTGCATCT
CATGTTTTTGCTATTCAATCAAATTAATCgataaaaaagacattttttgt
tattGAGGACAGACCAGCCACAGCGCCTGCAGAAATGGGTCCACGCATTT
TCGTTAGTGTAATGTTTATGGAAAGAAGTAATTTTAATAGATGTTGATTT
TCTGTTTTGCTAATTTTCAGCACTCTGGGATGCACTAAACGGTTGAAAGT
GTTTTTACGCACACATTATATACATTTCAAACCTTTTAATTTTCTGAACT
CTCCTTTGGGTGAGAATAAAccaatttattgttctacgggcccgaccgac
cctgtttatttaatattcgaaaaaaaaaaataatttagaatTTGCAAAAC
TCAAGGTTGGACTTTTGGTTCTTCGTTTTTGAATGAACAATTGAAAAAGT
CTAAATACATAAGGTTGATGGTATttgacaattttatttttactataCCA
GCCGTCCGATATTTTTCTGGAGGTTTGCCCGTAGAACAAATTTGTCTTGC
CTTatttaaaaaagagaagaagaagTGATCATCATATTAATCATTGTTGC
ATTCGAAACTGTGTAGAACTTTATGACCGACCATGTAAATTTTTCCCTTC
CCCTCCTATATTGAGAACAAtgtgtcttttttttcttttttttcaaatta
tatatGCATTATTTCTGGACAAAGATTTTAATACTGCTTTTATGAcgtga
aaatggaaaaatattgGATTTTGCAATTATATAATTATCTTTCGTACATA
ATGATAAAAATTAGAATTAAAGTGTTTATTAGAATTTCTccttaaaaatt
gtaaaatattcaaatctttcaaCGTGCTCTTTGTTTTAATGTAAATAGAA
GATCAATTTTTTAACccgttttgttgtttttcttttcttcatggAAATGC
TCTGTTTTGGAGAATTGACGCCTCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002350XLOC_002350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004218-exon-sc0000041-1491911889:137954..138305TCONS_00004218-exon-sc0000041-1491911889:137954..138305Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1510915933:137954..138305TCONS_00004218-exon-sc0000041-1510915933:137954..138305Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1575043694:137954..138305TCONS_00004218-exon-sc0000041-1575043694:137954..138305Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1491911889:138359..138531TCONS_00004218-exon-sc0000041-1491911889:138359..138531Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1510915933:138359..138531TCONS_00004218-exon-sc0000041-1510915933:138359..138531Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1575043694:138359..138531TCONS_00004218-exon-sc0000041-1575043694:138359..138531Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1491911889:145409..145814TCONS_00004218-exon-sc0000041-1491911889:145409..145814Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1510915933:145409..145814TCONS_00004218-exon-sc0000041-1510915933:145409..145814Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1575043694:145409..145814TCONS_00004218-exon-sc0000041-1575043694:145409..145814Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1491911889:146898..147146TCONS_00004218-exon-sc0000041-1491911889:146898..147146Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1510915933:146898..147146TCONS_00004218-exon-sc0000041-1510915933:146898..147146Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1575043694:146898..147146TCONS_00004218-exon-sc0000041-1575043694:146898..147146Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1491911889:147981..148009TCONS_00004218-exon-sc0000041-1491911889:147981..148009Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1510915933:147981..148009TCONS_00004218-exon-sc0000041-1510915933:147981..148009Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1575043694:147981..148009TCONS_00004218-exon-sc0000041-1575043694:147981..148009Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1491911889:148400..148427TCONS_00004218-exon-sc0000041-1491911889:148400..148427Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1510915933:148400..148427TCONS_00004218-exon-sc0000041-1510915933:148400..148427Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1575043694:148400..148427TCONS_00004218-exon-sc0000041-1575043694:148400..148427Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1491911889:148915..148974TCONS_00004218-exon-sc0000041-1491911889:148915..148974Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1510915933:148915..148974TCONS_00004218-exon-sc0000041-1510915933:148915..148974Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1575043694:148915..148974TCONS_00004218-exon-sc0000041-1575043694:148915..148974Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1491911889:149912..150017TCONS_00004218-exon-sc0000041-1491911889:149912..150017Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1510915933:149912..150017TCONS_00004218-exon-sc0000041-1510915933:149912..150017Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1575043694:149912..150017TCONS_00004218-exon-sc0000041-1575043694:149912..150017Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1491911889:150524..150596TCONS_00004218-exon-sc0000041-1491911889:150524..150596Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1510915933:150524..150596TCONS_00004218-exon-sc0000041-1510915933:150524..150596Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1575043694:150524..150596TCONS_00004218-exon-sc0000041-1575043694:150524..150596Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1491911889:150790..150937TCONS_00004218-exon-sc0000041-1491911889:150790..150937Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1510915933:150790..150937TCONS_00004218-exon-sc0000041-1510915933:150790..150937Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1575043694:150790..150937TCONS_00004218-exon-sc0000041-1575043694:150790..150937Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1491911889:151066..152581TCONS_00004218-exon-sc0000041-1491911889:151066..152581Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1510915933:151066..152581TCONS_00004218-exon-sc0000041-1510915933:151066..152581Clytia hemisphaericaexon
TCONS_00004218-exon-sc0000041-1575043694:151066..152581TCONS_00004218-exon-sc0000041-1575043694:151066..152581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:137954..152581 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.94647	2.9921	3.01478	1.98046	26.1903	18.4998	13.5015	15.7917	8.29789	14.894	14.5875	9.38919	19.8518	17.4359	17.2474	28.9867	8.99774	10.0093	17.9614	21.725	15.4637	12.1178	9.1408	11.9767	12.7735	14.8505	37.9122	35.0137	17.6583	17.4665
Blast
[Close]
BLAST of TCONS_00004218 vs. Swiss-Prot (Human)
Match: TFE3 (Transcription factor E3 OS=Homo sapiens GN=TFE3 PE=1 SV=4)

HSP 1 Score: 166.392 bits (420), Expect = 6.553e-43
Identity = 108/264 (40.91%), Postives = 157/264 (59.47%), Query Frame = 2 
Query:  899 PAMSLPSSVLKVETKLQNPTSYYLKQQQKRQVREYLEQ--NNQLSTNM--PVSVPTALQQNYNXXXXXXXXXXXXXXGGNPMSPNSPDAASSVASGGES--NDFFEDLFS-------EDLNIFSA---------TLPTNNNLLDTYVNNPTQKNEENQISISSSCPA---NVKQEEPDT---FFNKERQKKDNHNMIERRRRYNINDRIKELGTLVPK-IDNDMKQNKGTILKSSVDYIRRLKKDRERLRNVEHRSQSLEDINK 1603
            P   +P  VLKV+T L+NPT Y+L+Q +++QV++YL      +L++    P   P + Q          +P   ++ G    +PNSP A  ++ S  E   +D  +++ S       E L+             TLP + NLLD Y    +Q      I++S+SCPA   N+K+E  +T      KERQKKDNHN+IERRRR+NINDRIKELGTL+PK  D +M+ NKGTILK+SVDYIR+L+K+++R +++E R +SLE  N+
Sbjct:  168 PPAQVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPASAQ-------PLPAPEAAHTTGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTTGLQLPSTLPVSGNLLDVYS---SQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSSDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANR 421
The following BLAST results are available for this feature:
BLAST of TCONS_00004218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TFE36.553e-4340.91Transcription factor E3 OS=Homo sapiens GN=TFE3 PE... [more]
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