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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004222 ID=TCONS_00004222|Name=TCONS_00004222|organism=Clytia hemisphaerica|type=transcript|length=1673bp
TTTTTTCAGAAGTCAACTTGAAGtttctttcattttagaaCACCAACAGA
TAACttaatttgagtaaattatgaATCTTTCCACCACCACCACAACCTTG
GCGTCACTCTCCACAACCACCACTATGGCGCCACTCTCCACCACATTGGA
TCCGCTCATCCACAACATGTCGTGTGAAGTACCGCATGATGATCAATCGA
AAGTATACACTTATCATCTCTCTGCATCTTTCGTCGCTTCATCAACTTTC
ATTGCTATCCTGAATTTCGTGATGGCCATCCCTTGCGCTTTCACAAATCT
TCTCATCATCTTTGCTATCATCAAAAACGAACATCTTCAGATCACCCCAT
ACAAACTCCTCTTTAGTATTTGTCTGGCAGACCTCATCACCGGAGCTGTC
GCGCAACCCATATTTGGAACGCACATTTTCCAGATCAGTGCAGCTGATCA
TCAATGCCCATTATCCAATTTCATGATTTATATCGTCCCTGTTCTCATTC
TCGTTACCATGGTAACTCATGCTGTCTCtgcgttggaaagatattgcaGC
ATCCACTATGTGAAGAATTACGAGAAGATTTTCAGTTCGAGATTTGTTGC
AGGGATTTTGCTACTGGTGTGGAGTATCTCATCCATATGTTTCGTAGTTC
CTTTCATCAGTGGCAAAACCATTGTCGGCGGTCGCATCGTCATAGCTCTG
ATCCTCGTCTCACTTGCCATTTGCTCTTACTGTTACATCTCCATGTATCA
AGACTTCAAGCAGCAGTTCGTGCGAACGACCGCCAAGATCCAGGGAGCGT
ATATCATCAGGGAGGAGCATCCGGTCGAGCGCACTGCAGACgaacaacaa
aaatttcaaaagaacatcAAAATTGCATCTTTCTTCAACAAGTTGTATCT
TTGCATGTTTGTCATCTACCTGCTGACCATCGTCAAAAATATTCTAGTCG
CTTATGACGTCACCGTGGATAACGCTACATACACACTAAGCTTTGTTTTT
GATACGATTTTGTTTTCGAATGCTTTCATCAATCCATTTCTGATCTTTAa
attcaatgatgaaatttatgCATGTGTCAAAGACATCTTTTCGTAACGaa
tttttataatatacaagATAGATTTTCATATGGAATATTTATTGTCTATA
TCTAACAGTGGCAAAAATTGAAATGACGAGAATGCATAGATCTTCAATGC
TTAGAATTCTCTAGCACGAtgtcaaaacttttttcttaaaaaatgtgaAG
TTCGAGAAAACTTTCAACAACTCGAAGATTTTGATCATGGAATTCTGCCT
GCCGTACTGCGCAAATATTTATACCTTGTATACCTTGTATCTTGCTTCAA
ACAGTTGACAAACATTTGTATCTCAATCAATTTCATATTGTCTTTCGCTC
ATTAAGGTGACCAGTGATAAAAAAGTCAACGAGGTCTTCTTTATCGAATG
TGTTTATCATGTGAGGGTGGTGCTAATGAAGTATAAcctcgaagggctag
aagcgaatctccaACCTCGGGGTACTTGCTAAAGCACTCCCCAATGGCCT
CATGAGGTGCCGCCCCTTaacgaaaatgttttttttaggttttttcgaAG
CGTTTCGATATAGAAAATGAGATGGGGCATGGTCagatcatagtcattat
aaaaaaccctggtctgttAATGT Run BLAST on NCBI transcript from alignment at sc0000041:152776..154529+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004222 ID=TCONS_00004222|Name=TCONS_00004222|organism=Clytia hemisphaerica|type=transcript|length=1754bp|location=Sequence derived from alignment at sc0000041:152776..154529+ (Clytia hemisphaerica)
TTTTTTCAGAAGTCAACTTGAAGGTATGATAACTTTTAAGAATTTGTAAG
TATTAATATATAGCAGTGGATTTTCGAAGGTTAATCGCTGGAATCAATTc
atagtttctttcattttagaaCACCAACAGATAACttaatttgagtaaat
tatgaATCTTTCCACCACCACCACAACCTTGGCGTCACTCTCCACAACCA
CCACTATGGCGCCACTCTCCACCACATTGGATCCGCTCATCCACAACATG
TCGTGTGAAGTACCGCATGATGATCAATCGAAAGTATACACTTATCATCT
CTCTGCATCTTTCGTCGCTTCATCAACTTTCATTGCTATCCTGAATTTCG
TGATGGCCATCCCTTGCGCTTTCACAAATCTTCTCATCATCTTTGCTATC
ATCAAAAACGAACATCTTCAGATCACCCCATACAAACTCCTCTTTAGTAT
TTGTCTGGCAGACCTCATCACCGGAGCTGTCGCGCAACCCATATTTGGAA
CGCACATTTTCCAGATCAGTGCAGCTGATCATCAATGCCCATTATCCAAT
TTCATGATTTATATCGTCCCTGTTCTCATTCTCGTTACCATGGTAACTCA
TGCTGTCTCtgcgttggaaagatattgcaGCATCCACTATGTGAAGAATT
ACGAGAAGATTTTCAGTTCGAGATTTGTTGCAGGGATTTTGCTACTGGTG
TGGAGTATCTCATCCATATGTTTCGTAGTTCCTTTCATCAGTGGCAAAAC
CATTGTCGGCGGTCGCATCGTCATAGCTCTGATCCTCGTCTCACTTGCCA
TTTGCTCTTACTGTTACATCTCCATGTATCAAGACTTCAAGCAGCAGTTC
GTGCGAACGACCGCCAAGATCCAGGGAGCGTATATCATCAGGGAGGAGCA
TCCGGTCGAGCGCACTGCAGACgaacaacaaaaatttcaaaagaacatcA
AAATTGCATCTTTCTTCAACAAGTTGTATCTTTGCATGTTTGTCATCTAC
CTGCTGACCATCGTCAAAAATATTCTAGTCGCTTATGACGTCACCGTGGA
TAACGCTACATACACACTAAGCTTTGTTTTTGATACGATTTTGTTTTCGA
ATGCTTTCATCAATCCATTTCTGATCTTTAaattcaatgatgaaatttat
gCATGTGTCAAAGACATCTTTTCGTAACGaatttttataatatacaagAT
AGATTTTCATATGGAATATTTATTGTCTATATCTAACAGTGGCAAAAATT
GAAATGACGAGAATGCATAGATCTTCAATGCTTAGAATTCTCTAGCACGA
tgtcaaaacttttttcttaaaaaatgtgaAGTTCGAGAAAACTTTCAACA
ACTCGAAGATTTTGATCATGGAATTCTGCCTGCCGTACTGCGCAAATATT
TATACCTTGTATACCTTGTATCTTGCTTCAAACAGTTGACAAACATTTGT
ATCTCAATCAATTTCATATTGTCTTTCGCTCATTAAGGTGACCAGTGATA
AAAAAGTCAACGAGGTCTTCTTTATCGAATGTGTTTATCATGTGAGGGTG
GTGCTAATGAAGTATAAcctcgaagggctagaagcgaatctccaACCTCG
GGGTACTTGCTAAAGCACTCCCCAATGGCCTCATGAGGTGCCGCCCCTTa
acgaaaatgttttttttaggttttttcgaAGCGTTTCGATATAGAAAATG
AGATGGGGCATGGTCagatcatagtcattataaaaaaccctggtctgttA
ATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004222-exon-sc0000041-1491911889:152776..152798 | TCONS_00004222-exon-sc0000041-1491911889:152776..152798 | Clytia hemisphaerica | exon |
| TCONS_00004222-exon-sc0000041-1510915933:152776..152798 | TCONS_00004222-exon-sc0000041-1510915933:152776..152798 | Clytia hemisphaerica | exon |
| TCONS_00004222-exon-sc0000041-1575043694:152776..152798 | TCONS_00004222-exon-sc0000041-1575043694:152776..152798 | Clytia hemisphaerica | exon |
| TCONS_00004222-exon-sc0000041-1491911889:152880..154529 | TCONS_00004222-exon-sc0000041-1491911889:152880..154529 | Clytia hemisphaerica | exon |
| TCONS_00004222-exon-sc0000041-1510915933:152880..154529 | TCONS_00004222-exon-sc0000041-1510915933:152880..154529 | Clytia hemisphaerica | exon |
| TCONS_00004222-exon-sc0000041-1575043694:152880..154529 | TCONS_00004222-exon-sc0000041-1575043694:152880..154529 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:152776..154529 + |
Blast
The following BLAST results are available for this feature:
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