TCONS_00004266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004266
Unique NameTCONS_00004266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004266 ID=TCONS_00004266|Name=TCONS_00004266|organism=Clytia hemisphaerica|type=transcript|length=705bp
CTATGCTCTAAAGTCAGAATCCCGATTATTGAAGCCATACATCAGCACTA
CCCACGAGTTTCAGaTTTGTTGCGAAAGATGAAATCTCTGGAACAAGTCA
GTTGAAGTCATCAGTACAACGTGGCATCAGAACAAAACTTCAAGAACACT
ACCCAAACATACAACCTTATATTGATGAAATCCTCCCAAAAAAAGAAAGC
ATTGTCCTTGTTAAATGTAAAGAACACATCGAAATATTAGCAGTAAAATC
ACAGCTGGTGTTTTTCAGACAGCGTGATGGTCCTTGGATACCAACTTTAA
GACTTCTTCATAAATGTATATCCATTCTTACTAACACATGAACAAGTGGA
TAAAGGGGCAATCCGCTTCATATTGAGTGGAGCAAATATTATGTGTCCGG
GCTTGACGTCACCTGGTGCGAAAATGACACCAGTTGAAAAAGACACAGTA
GTTGCCATAATGGCAGAGGGAAAAAAACACGCTGTCTGCATTGGCTCGAC
CAAAATGAGCACGCAAGAAATAGCGGAAAAGAATAAAGGCATAGGGGTGG
ATAACGTCCATTATCTTAATGATGGATTATGGGTAATGAAAAACCTGGAC
AAATAGAAGAAGTATCAAATttcgttttatttatttttcaaacaataatt
tttttgtacatttttatttgaaatttacaAATACTTACAAAAAACCTAAC
CGAAT
Run BLAST on NCBI

transcript from alignment at sc0000041:107936..118535-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004266 ID=TCONS_00004266|Name=TCONS_00004266|organism=Clytia hemisphaerica|type=transcript|length=10600bp|location=Sequence derived from alignment at sc0000041:107936..118535- (Clytia hemisphaerica)
CTATGCTCTAAAGTCAGAATCCCGATTATTGAAGCCATACATCAGCACTA
CCCACGAGTTTCAGGTGAAGATTTTTATTTTTCTTGTTCGAAGATTCCCA
CACCATTTTTCTTATCAAATTTATCACGGCAGTGGACCATGTTTAAGAAG
TAAGTAGAAATGTCTTTTCTTTGGTCTTTATGTCCTTATTATATTTATTC
ATATCTTACAGTAGGAAAAACCTGGCGCCGCCGCCGGACCGCAACAAAAA
CCTGTTTTCTGGAAATCCTATCCTATTCTTTTTTTTATGATGGGGATCAA
GGCTCGAAATAACGATTTCAAGTGGGTCGGACAAAATGTCCAATCAGGGT
TGCTTTAGCTTGAAAATTTTGATTTTTGGGTCGAACATGAAGCTATTTGG
GTCGGACAATGTCCGATGTCCAACCGTGTTATTTCGAGCCCTGGGGGATG
GATGGCTTCAAAAACATATAAATGCATAGCTGTGAACTCTCCTTTAATAG
TCAAGACAAGACTCCTGAATCTGGAAACTTTTTCGTGAATGTAAAATTTG
CTCCAAAATCTCCTGGATTTTTGAGATTTTTAATCATGGTTTTCTGAAAA
AATCTGGAAATTTTCCCTGATGATTTTTGAATATTATTTGGTCAGTGACC
ACCTATCGATTTTATCAGTGGTCAAATACCGTAAGTTGGTCTAATATCGA
CATCCCTCGTCTAATTTCGACACCCTTCTTTAGAGACGGGAATAATATGA
AAGCTTGAATCAGTCAGGCGGCAATCAAAAATATGTTGCGTTCGGGTCGT
CCGACCGACTGTTTATTTACAAGAAAACCCGATTCGGAAAGTCGGTAAAA
TCGTCGGGTTTTTTTGGCACTGTTCGCAGGTTCGGATCTTTCCCATAATG
GCGGGCACGGGCGAACGGAGCATGTCTTTGAATCATTTTTTTTTTACTTA
ACCCACATTGAGTCCCGTTCAAGTTTTTTCATGTACCCTTATTGAAAATT
TCATGTCAAAATTCAGCAACGCGGTAGGGCCAATACCCTGGGGGCCAAAA
ATAAGGGCCACTTTAAGGTTAATACATGCGCGCGCACATTTAGTTTGGCA
AATTAAAGATGGCGGCATAAGATTCTGTTGATTGCCGACTTGATTCATCG
GGATTTACTAGATCTTAAAAATTCGACAAAATTTACTAACCGACCGACCG
ACCGACTGGATTTGAAGATGTTTTAGGGCCCGAATGGAACATATTATTGA
TTGCCGCCTGAGGCTGGAACTTCGATTTTTGAGGATTACGATTTTACCAG
CTTTTTAGCGATTTTTGCCTCGCTAACCCAAATCTTGCAACCTCTTTACC
TTAAAGAAGATCAAAATTAGAGTTTTTCAGCAATCCGAAAAAAATGCATA
GCAGAAATTTTTTCATTTTCACAGGATCGATTGTCAACAACAAAATACAT
CTTTTGGTCTTTGGGTTTGTTTCTGACGTTTTTCCTTCAAAGAATATTAA
TCACTTTCCTTTTCCCCTTGAGCGTGCGAGGAAAAAATGATTAGCTCGCG
TTCTCGCGCGGACGAATAAAAATGAGGCGGCAATCTTGCAATGAGGGTGC
TACTTAGTTTTCGCCCTATTTTGCGCCCACGATAGAATGGTCCAAATACG
GGGGTATTCTAAATGATAAACTATGTCGTTCTGTAAGTGTTTATTTTCTG
AGAGATACAAATAGTGTATTGAATAATTATTAACTTATTGTTTTAAGTAT
TTTTGAGTGCAAATTTAAATATATAGTTAAATAAAAAACAAATGATAGCA
GTTCTGTTTTTTCCTCAAACCTCCGGGAAAAGTTTTTTTGCCGACTTAGC
TATTTTACAAATCTCGGAAAAGAACTCCATTAGGAATTCGGATACAGAAC
CTGATTGGTTAATTTCGGAACGGCTTCAAGAAAGTCATAATGGCAGATAA
TTTTAAAAGTTTCTGAGGAAATGTGTGTAATTTATCAATGTTGATGGCTT
GTTGATTCCTTAAAGAAAAAAGATAACAGGTATAGCTTTTTCTAATCCTG
GAATATCGAGGTTCCAGCTACACTGTGAATCATTGATTGAAAAACAAAGA
TCAATCTCTTAGCACTAAGCAAAGAAAACAGTTTTAACTTTTCTATCAAT
TTCAGCTGATAAAAAGGATGTAGAGATTAGAGGAGGGATGTCGACATTAG
ACCAAGTTACGGTAGTCACTTGGCTCCAAATTATGGCATTTTCTTCAACC
ATTTTTTATTTGTTCAGTCATTTCGATTACTTTTCGATTACTTTTGTGAT
CATTACCGTGAAGTTGGGTAACTTGCATCAGTGGAGGGAAACTTGCATAG
CCCTCAAATGAATGACCTGGCTGGTCATTAAAATACAAATCAAAATAAAA
TGGTAGAATAGAGCTGCGAGCGGAGCTGCATAATTCAATTGTTTTGACAT
TTTGCTGCTTTGGTTGGTCAGTCATTTGATGGCTATGCAAGTTTCCCTCC
ACTGATGCAAGTTACCCGACTTCACGGTATTGAAATACAGACTGCATGAG
AGATAAAAATTTCCAAGTGAAATCCGAAATCTTAGCCCGGTTTTCTGATT
TTCCTAAATCAGAAAATCAGGGAAACTTCTTTCCAAAAACCAGGATATCA
GCAAAACATTTTTGCCGAAATCGGAGAATCGAGGAAATATTTTTTATATT
TCAAAAATGCGTGAGATAGCGTGAGAGATCAAGTTTTTTTTTAATTGCGT
GAGACAATGTTGAAAGTTGGTCTAATATCAACATCCCTCATCTTATTTTG
ACACCCTTCTTTAGAGATGGGAATAATATGAAAGTTGGAATCACTGATTG
AAAAAGGATTTTTCCTCTCTGATCACTAAAGCAAAGAAAAAAGGTTTCAA
CCTTTATTATTTTCAGCTCAAAANTATCACTAAAGCAAAGAAAAAAGGTT
TCCGCCTTTATTATTTTCAGCTCAAAAAACTTCCAAAAAAAACCCAGCAT
TTTTTAATGAAATTAACATTTTCAAAAAACTATGAGAAATTGATAGCTAA
AAATAAAAACTGCATTTTTGAAAGAATGAAACATTTTTTATATTATGTAT
TGTATATTAGTTTTCTCAGTCCATTTTCTTTTTCGTTCTTTACCGTGCGG
ACATCTGCACAGCATTTCAGACTTTAGGTGTCAAACCAGGTTCTGAGTGT
ACTTTTTGAAAATTTGTGTTTTTTGGTACAACATATTGATACTTGCCTTT
TGTCGTTTGTCTTGTTCTTGTCTCTTTGAACAGGCTAGCTCTAAAGCTCT
AAAACAGCATCTAATAACATGAAAACCAGAAAATGATTCTTTGATGGGAA
TCAAAACTATAAAGTGTACTTACAAACATCAAGATGTCAGATCTAAGAAA
ATTAATAACGGCACAGTCATCATTGACAATAAAAAAAAGGATTTTCCGTC
AAGGAGTCTTGTAAACATTCCAACAACTTCCATCGAAATGATCTGTCACA
GCTGAGTCTACCATTTTTAACACGGTCCGAGGATTGAGCTGAGGACGCTC
GCAGAACACCCGCGAGCTCCCGCGCTGGTGAAAGATTTAATCTGGCAATC
ATTTTCTCAAGCGAAGAGTACGCGAAGCAATTCTAGCTTCACGATAGTGC
TGCGGATCATCAGTGGATATTATTCAATCATCATTATCCCTTTATTTTCA
TTCCTAGAACTTTTGCAAAAAAAGAAAAAATAGAAAAGTTGTATTTTTTA
CTGCTCTATTCACATACTGAATTTGAAAGATCTTCTATGTGGCGTTTTTT
TGCAAACTTCAAAAAACTGATTTTTGTCCCGTCTTTGCAGGACTTTCGCT
TAAGTGCTTGTGTGCATAGGGTACAAAGTCCAAATATGCGTTTCCCGTAA
TTTTTGTATGAAGAGTTAGGTCCATACTGTTGAACTTATTTGTTTTGTCT
GTTGTTTAACCTTTTTTGTTTTTTTTGTATTTGAATGCAAGTTTTTGTAT
ATTTTTTTATGTTTGTTAGTTTGTTTGGACTGCGGGTCTGTTCAGGGTTC
CGGAATCTGGGGAGGCTGAGTGTTGGACGTCCTTAAAACATGTTTAAAGC
CGCTGGCCCACCTGTCGCAAGTCGGGGCTGGTTGGGGACTCCAGATTACA
TTATAATTTTTGTTGGGCTTTTGGGTAGTTTTTAGTGTTTGTATTTGTGT
GATTGCTGTGTTTATATTTCTACTTAGCTATTTAAACTAAGTCCCTTTTT
ATGTTTCATTTTAATTTTATTTAGTATTTTCAACATTTAATCTCCTTTAG
GTCAGATCTCTGATCTTTATATGAAAAAATTTGATCTGAGCCAGTTTTGA
AAACTAATTTGATGATCAACTTCCCAAGAAAAAGATCTAGGTGGAGAGTG
CAACCCCGGTTAGGCTATTTTTCTGGACCTCAAACACTGACTCATTTACA
TGTGCTGAATTATTTTTACTTTAGCATTTAGTTAAGTCCTAAGAAATCGA
AGTGCTATCTTGGGAATTTGGTAATTGGTCATTTTGGTCATTTCTAGTTT
TAATAATTGTCTTGGGATCTTGAATTTGATTCAGGTAACTCTCATCCTTG
TTGTTGCAAATACATACTGTAGATGATTGATGTCGTTTTTTCTGAAAGCT
TGATTTCTTAGTGTGACTGACTTGAGGAAACCCAGGGCAAACGCACACAA
AATGGCCGGGTAATTACTTAAGGTCATTCTTATGGTTGGCGCTTCTTTTT
GTGGTTTAAGGTCAATGTTTTTGGTTTTTCTTAAAGATATCTATATGTAA
TCAATTGGTTATCTAGGTAATCAATGGTCCCTTCTTGGCATCCCCCCAAC
CTTTAAAAATACCTATCCCCCAAAGATTTTGGACAAAAATAGCTAACAAA
TATATGTAAAATATCTTTAGAGGGAGAAAGCGAAATAATAAACTTCTTTC
TTATTTTTGTCTCAGACTACTCATAACAGAAAACTTCCTTTCATGAAAAC
CAAATTTCATAACTGGAAAATAATCTACAATATATATGTAAGCCCCCCTT
TAAACTATCCCCCCTTCCTTGCTATCCCCCCTTTTCATGAAAATTTCTGA
CCCCCCTTCTTCATTTTTTCGGAAGGTGTCATCCCCCCTTAAGAAAGTGG
GGTCCGAACAATGGGCTAAAGAAGTCACATGCTATTTTTAGAAAGGCATC
GCAGTGTCCGTTGGTGGCCAAAAAGGGCATTTTTTCTTGTGTTTTTCCAC
TAAAAAGGCTTTTTTGACCAAAGTTTTAGTGATTTTAGGAGAAGCGCCTA
ATAGCTGGATACTAAAAGGGCTGAAAAAAGCTTGAAAAATGGCCTGAGTC
ATGCAAATTGTTTGTTGACTTCAAACCAAATGTTTCATTTTTCCATGAAC
TTTGAACGCTTCTGATTTTTATTATTCTACTGTGTTACTCTGGTTAGCCT
GCAATCTTGGCTTTCCAGCAACACTGAGACTTGGGCTAGACGGCAAATTA
GTAAATGCTGAACGTTTATTTAAAATTTATTGATAATTGAACTTCTGTAA
AAACCAGGAAGAATAAAATTGGCAGCCAAACAATGGAGTATATACATGAA
AAAGTTCACCATCAATGTTCTTTATGTTCTGAAATACATAATGTAAATTG
GCCTAATAGACCTTTTGTAGGACACAATGTCATGTTGAATATAATTAAAA
ACTCCACTGACTCCAGCATCAAAACAACGATAAGAAAATATTAAGTACAT
GCATTTACTAATCATGCTCTCGATTGTTTTTTTTCAGCTTGAATTTAAAT
AAAAAGTTTGGGTTTTAGGGTCAAGGTGAAGTGCTTCAACAAGTCTGATT
TTTTTTGTCATAGATTTGTTGCGAAAGATGAAATCTCTGGAACAAGTCAG
TTGAAGTCATCAGTACAACGTGGCATCAGAACAAAACTTCAAGAACACTA
CCCAAACATACAACCTTATATTGATGAAATCCTCCCAAAAAAAGAAAGCA
TTGTCCTTGTTAAATGGTATGCAATTAGAAATTGATCAAAAAGTTTTTTC
CTGAAAGATTTTTATCTAACTCTGATAAACCTGAATTTGAGGCAAAATTC
AGAAAAGATCTTTTTTGTTGGACCTACCCCGGTGGAGGTCCTATAAATTA
ACCGTTGTCCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCTTGAGCTTTT
CTCGAGATTGGCTCATTCATTATTTATGATTTTTTGCACAAAGGTGCTTA
ACTATAAACCCTCGAATGTGACAAAGCCCAATTTTGGGAGAAAAAAATTC
GGGGGCAAATTCCAGCCAAAAAACGGCTAAAAAAAGGGTTTTTTGGACTT
TGTTGAAAACTGGATCATTAATCTTTCCTGATTTTTTGCATGAAAGTAGG
GTATTACCATCGGTAAAAGATGGTTGAAGCAGATTTTCACTAAAACATTT
TCTCGCCTCAATAATTGAATCTATATTCATAAAAATCACTATTTATAAGC
ATGCATCAATGTTCTTAGCCAAATTTTTCAATTTTTAGATGAGATAGATA
TTCTTTTCCTTCCAATTCCCTTCCTTAATACAACCCCAATGGGCACGGGG
TACAATTAATGATGAAAACAAACGACAAATTTTAATAAATCGTCACTATT
TGTGTTCCGAATGATTGTTTTAACGATATGTGTTAAACCTTTAAGTGCTG
ATCTTTTTTTTTCACAACTCGACCTATTTGGTTAAAGGGTTGAATGCATA
ATCAGGTAGGTCCATAAAACCGTCTGTTACCAGCTTTTCTCAGGATTGGC
TCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATCGCAATGCCC
AGAACGTGACGGAGCTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TAAGAAAATATAGCTTTTCTCAATGTTGACTCGTTATTTTTTTCTGATTT
TTTGCACAACGATGCAAAATGGCAATGCCTAAAATGTGTCGGAGCCCGAT
TTTTGAGAAAAAATATATATTTTGGCAAATTTGGGCCAAAAACTGCCTAA
AAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATAACTTTTTTCTG
ATTTTTTGTACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
ATTCCCTTAAACCAAATAAGAAAATATAGCTTTTCTCAATGTTGACTCGT
TATTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAATTCCCAAAA
TGTGAAGGAGCCAGATTTTTAAGGAAAATCTTTTTGGGCAAATTTGGGCC
AAAAACAACTTAAAAGGTTTTTTGGGCCTGAATGGTTTAAGTGATTTTCG
TATTTGGGGAAATTCCTTTTTACCATTTTACATTATTCAACACACAAGCT
TTATTTTTCCATTCTGAATTTCTGAATTTTTGTACAATTATTGTCACTTT
TTTCTTATTTTCATCTGATGTTTATCATTAGGTAGGTCCATTCAGCATGT
TGCTTGTTTTATATTATTTTTGTTTATCTTTTTATTCAATGTCATTTATC
CTTTTTTCTCCAATGTCAGTCTTACTATAGTCTAGCAAGCTAGACGACTA
ATTCAGACATATTAGAAATAAAGCAAAAAAGTAAATTTTAGTCGTCTAGA
AACCTTTTGTGCACTAACTCCAAACAAAAAAAAAGTGTCAATATCGCAAT
TAAAATTTTTTCCCGCTCAAAAAAAGTTCTTGAAAATAAAATGTGTGTGG
ATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCATTT
GAGTTGATTTTATTTTGAGAGTTTGTTGTTGCTTGATAAATTGTTTTTTC
GCTACGCAAGTTTCTGCGTAGCTAGGCCCGGTANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAGTCTTACTATGCTTACATGCTTTATGC
CTGTAAAATTTGTTTAAATATGAAAAGAAATCTCTAGGTGCATTTTTCAA
GAGACAAAATTCTCGGCGGGACAAACTTCCTAGAAACATTATTATCAACA
CCCCTTGGCCTTGGATATCGGCTACCTACCGACAGCCAAGAAAAACAAAG
GCTGAGTTATCGGTCAATTACTTTAATTGGATAAACTTTCGCGGGATTAA
ATTTCGCGGATTTCGCGAATTTGTTTGTCAAATAAATACTATTTGAATGG
TCACTTGCATCAAAGAGGCGCAAATGTGTACTTCAACAACCAGCATGTAT
GATCACAAAATCGTGAAAATATTGCTACCCAATAGTGCCACCCGCAAAAT
TAAGTCCCCGCAAAAGTTTTGATTTTCGCCGATAGGCCCAACCGCGAAAT
TTAATCCCCGCGAAAGTTTATCCCATCTCAAAAAGACTTACAAGGAGTTT
TAAAAATTCACTCTTCCTTTTGTTTTTAGTAAAGAACACATCGAAATATT
AGCAGTAAAATCACAGCTGGTGTTTTTCAGACAGCGTGATGGTCCTTGGA
TACCAACTTTAAGACTTCTTCATAAATGTATGTGAGTGTTTTCTTTTTGG
ATGTATCCAACAATTTCACTTTTGTTATAAATCAAAATGCCACTTTTCTC
ATGTCTTTTGTCTCCTTGTCAAGGCTTTGGTATCAAATTTTTTTTTTAGC
AAACCACACGACTGCAAGTACCTCAAAGGGTGTTTTAATGTTTCATCACG
AATAAATTTATCTCTTTATCTCCGTTATTATTCTTTTTTTAGATCCATTC
TTACTAACACATGAACAAGTGGATAAAGGGGCAATCCGCTTCATATTGAG
TGGAGCAAATATTATGTGTCCGGGCTTGACGTCACCTGGTGCGAAAATGA
CACCAGTTGAAAAAGACACAGTAGTTGTATCCTTTCATCATTCCACATAA
AATTAGTTTCTGACATTGAAATTTTCAATAGTGTCTTGAAGTTAGTCAAA
GTTTAGCCATACGAATTTGAAGTCGGTGGGGCAATTAGAGCGCTCTACAT
CAAAATTTGAAAGTTATGGAAACTTTTTTTGGACCACCCGGTTTATTTCT
TGTTTTGAACATTTTATGAAGAATTTTTGCTTTACTTTTTACACTCTTAA
AATTGTTTTAAAACATCTATGTTACAAGCACTTTATGAATTTCCTTAACT
TTCGTTCATTAAAACTGAAGGCCATAATGGCAGAGGGAAAAAAACACGCT
GTCTGCATTGGCTCGACCAAAATGAGCACGCAAGAAATGTAAGAATCTTT
TTGACGCATTGTATCAGTTCAGCTCTAGACAGGAAACCCGTCCTGTATTT
TCATATACAGGACGGGTACGAGTTGTGAGGCAGATTTCTGCCTCGAAAAA
CTTTACAGTTGGAAATTCGAACTTAGCGCCGTCCTCACTTACTAAAATAA
AAACCAAATTTCAGAACTTGCGATTTCTCTAAGAAAGTGTGACCAGTAAA
AGAATAACAAAATTTGATTGGCTATGTTTTCAACCGTCATTAGGATCTGG
GAAATTCAAACTCAGTCCAAACCATGCTATATATTTTGCCATCAGTATAT
AAAATAAGCAATCATAGCATTGATCTCCAGGCTAGTTCAGTGGATTAGTT
TTTTCGGTTCTTCGAAGGAAAAACGCGCTATCTGTTGATATTTATCAGTT
TTATTTCTTTTTACAGAGCGGAAAAGAATAAAGGCATAGGGGTGGATAAC
GTCCATTATCTTAATGATGGATTATGGGTAATGAAAAACCTGGACAAATA
GAAGAAGTATCAAATTTCGTTTTATTTATTTTTCAAACAATAATTTTTTT
GTACATTTTTATTTGAAATTTACAAATACTTACAAAAAACCTAACCGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002369XLOC_002369Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004266-exon-sc0000041-1575043694:118472..118535TCONS_00004266-exon-sc0000041-1575043694:118472..118535Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1575043694:112520..112672TCONS_00004266-exon-sc0000041-1575043694:112520..112672Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1575043694:109255..109356TCONS_00004266-exon-sc0000041-1575043694:109255..109356Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1575043694:108910..109043TCONS_00004266-exon-sc0000041-1575043694:108910..109043Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1575043694:108548..108615TCONS_00004266-exon-sc0000041-1575043694:108548..108615Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1575043694:107936..108119TCONS_00004266-exon-sc0000041-1575043694:107936..108119Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1510915933:118472..118535TCONS_00004266-exon-sc0000041-1510915933:118472..118535Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1510915933:112520..112672TCONS_00004266-exon-sc0000041-1510915933:112520..112672Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1510915933:109255..109356TCONS_00004266-exon-sc0000041-1510915933:109255..109356Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1510915933:108910..109043TCONS_00004266-exon-sc0000041-1510915933:108910..109043Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1510915933:108548..108615TCONS_00004266-exon-sc0000041-1510915933:108548..108615Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1510915933:107936..108119TCONS_00004266-exon-sc0000041-1510915933:107936..108119Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1491911889:118472..118535TCONS_00004266-exon-sc0000041-1491911889:118472..118535Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1491911889:112520..112672TCONS_00004266-exon-sc0000041-1491911889:112520..112672Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1491911889:109255..109356TCONS_00004266-exon-sc0000041-1491911889:109255..109356Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1491911889:108910..109043TCONS_00004266-exon-sc0000041-1491911889:108910..109043Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1491911889:108548..108615TCONS_00004266-exon-sc0000041-1491911889:108548..108615Clytia hemisphaericaexon
TCONS_00004266-exon-sc0000041-1491911889:107936..108119TCONS_00004266-exon-sc0000041-1491911889:107936..108119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:107936..118535 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.2493	26.9269	18.5127	18.1569	5.32897	3.43226	7.37396	3.63738	3.02002	1.87669	0.731749	1.83578	1.29135	1.19993	1.19553	2.52642	2.93115	1.55289	2.22253	0	4.89039	0.940929	13.0052	12.1246	1.34425	1.47612	0.654496	2.59128	6.65783	5.40674
Blast
[Close]
BLAST of TCONS_00004266 vs. Swiss-Prot (Human)
Match: MCTS1 (Malignant T-cell-amplified sequence 1 OS=Homo sapiens GN=MCTS1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.186e-61
Identity = 65/95 (68.42%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:  307 FINVYPFLLTHEQVDKGAIRFILSGANIMCPGLTSPGAKMTPVEKDTVVAIMAEGKKHAVCIGSTKMSTQEIAEKNKGIGVDNVHYLNDGLWVMK 591
             ++ YPF+L H+QVDKGAI+F+LSGANIMCPGLTSPGAK+ P   DT+VAIMAEGK+HA+C+G  KMS ++I + NKGIG++N+HYLNDGLW MK
Sbjct:   84 LLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMK 178

HSP 2 Score: 102.449 bits (254), Expect = 8.186e-61
Identity = 46/89 (51.69%), Postives = 68/89 (76.40%), Query Frame = 3 
Query:   63 RFVAKDEISGTSQLKSSVQRGIRTKLQEHYPNIQPYIDEILPKKESIVLVKCKEHIEILAVKSQLVFFRQRDGPWIPTLRLLHKCISIL 329
            +F  K+ +S   QLK+SV +GI+ +L E +P I+P++++I+PKK+ + +V+C EHIEIL V  +L+FFRQR+GP+ PTLRLLHK   IL
Sbjct:    4 KFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFIL 92
The following BLAST results are available for this feature:
BLAST of TCONS_00004266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCTS18.186e-6168.42Malignant T-cell-amplified sequence 1 OS=Homo sapi... [more]
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